RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 C9orf118A6NHY6 69 aa11.1□□□□□ -0.63
USP4-201ENST00000265560 DNAH10Q8IVF4 4471 aa11.1□□□□□ -0.63
USP4-201ENST00000265560 LINC00158P58513 81 aa11.09□□□□□ -0.63
USP4-201ENST00000265560 MIAQ16674 131 aa11.09□□□□□ -0.63
USP4-201ENST00000265560 PGPEP1Q9NXJ5 209 aa11.09□□□□□ -0.63
USP4-201ENST00000265560 SOSTDC1Q6X4U4 206 aa11.09□□□□□ -0.63
USP4-201ENST00000265560 C15orf53Q8NAA6 179 aa11.09□□□□□ -0.63
USP4-201ENST00000265560 IGKV2D-24A0A075B6R9 120 aa11.08□□□□□ -0.64
USP4-201ENST00000265560 CCL18P55774 89 aa11.08□□□□□ -0.64
USP4-201ENST00000265560 CIRBPQ14011 172 aaKnown RBP11.08□□□□□ -0.64
USP4-201ENST00000265560 STARD9Q9P2P6 4700 aa11.07□□□□□ -0.64
USP4-201ENST00000265560 HIGD2BQ4VC39 106 aa11.07□□□□□ -0.64
USP4-201ENST00000265560 TMEM238LA0A1B0GVL6 79 aa11.07□□□□□ -0.64
USP4-201ENST00000265560 A6NJY4 79 aa11.07□□□□□ -0.64
USP4-201ENST00000265560 CKS1BP61024 79 aa11.07□□□□□ -0.64
USP4-201ENST00000265560 MIR7-3HGQ8N6C7 128 aa11.07□□□□□ -0.64
USP4-201ENST00000265560 C10orf25Q5T742 122 aa11.07□□□□□ -0.64
USP4-201ENST00000265560 KIAA0087Q14695 138 aa11.06□□□□□ -0.64
USP4-201ENST00000265560 RPL24P83731 157 aaKnown RBP11.06□□□□□ -0.64
USP4-201ENST00000265560 LINC01556Q5JQF7 62 aa11.06□□□□□ -0.64
USP4-201ENST00000265560 LINC00308Q8TCZ7 52 aa11.05□□□□□ -0.64
USP4-201ENST00000265560 UNQ6190/PRO20217Q6UXQ8 127 aa11.05□□□□□ -0.64
USP4-201ENST00000265560 SPANXDQ9BXN6 97 aa11.05□□□□□ -0.64
USP4-201ENST00000265560 SPANXCQ9NY87 97 aa11.05□□□□□ -0.64
USP4-201ENST00000265560 CFAP161Q6P656 301 aa11.04□□□□□ -0.64
USP4-201ENST00000265560 DNAH1Q9P2D7 4330 aa11.04□□□□□ -0.64
USP4-201ENST00000265560 A0A1B0GWB2 263 aa11.04□□□□□ -0.64
USP4-201ENST00000265560 A0A1W2PPM0 123 aa11.04□□□□□ -0.64
USP4-201ENST00000265560 SPAG11BQ08648 103 aa11.04□□□□□ -0.64
USP4-201ENST00000265560 HERV-K104P63124 156 aa11.03□□□□□ -0.64
USP4-201ENST00000265560 Q8IZM0 81 aa11.03□□□□□ -0.64
USP4-201ENST00000265560 LOC107984156A0A0G2JMH3 177 aa11.03□□□□□ -0.64
USP4-201ENST00000265560 TSPAN13O95857 204 aa11.03□□□□□ -0.64
USP4-201ENST00000265560 ARL17AQ8IVW1 177 aa11.03□□□□□ -0.64
USP4-201ENST00000265560 C1orf43Q9BWL3 253 aa11.03□□□□□ -0.64
USP4-201ENST00000265560 CASC10Q5T4H9 136 aa11.02□□□□□ -0.64
USP4-201ENST00000265560 ERG28Q9UKR5 140 aa11.02□□□□□ -0.65
USP4-201ENST00000265560 DNAH10OSP0CZ25 163 aa11.02□□□□□ -0.65
USP4-201ENST00000265560 KRTAP26-1Q6PEX3 210 aa11.02□□□□□ -0.65
USP4-201ENST00000265560 PRO1854Q9UHT4 67 aa11.02□□□□□ -0.65
USP4-201ENST00000265560 LECT2O14960 151 aa11.01□□□□□ -0.65
USP4-201ENST00000265560 GAGE10A6NGK3 116 aa11.01□□□□□ -0.65
USP4-201ENST00000265560 TIMM17BO60830 172 aa11.01□□□□□ -0.65
USP4-201ENST00000265560 MTURNQ8N3F0 131 aa11.01□□□□□ -0.65
USP4-201ENST00000265560 SPCS1Q9Y6A9 102 aa11.01□□□□□ -0.65
USP4-201ENST00000265560 TRAV8-4A0A0B4J246 113 aa11□□□□□ -0.65
USP4-201ENST00000265560 FABP2P12104 132 aa11□□□□□ -0.65
USP4-201ENST00000265560 UBE2V1Q13404 147 aa11□□□□□ -0.65
USP4-201ENST00000265560 Q1RN00 199 aa11□□□□□ -0.65
USP4-201ENST00000265560 UBE2DNLQ8IWF7 75 aa11□□□□□ -0.65
USP4-201ENST00000265560 APLNQ9ULZ1 77 aa11□□□□□ -0.65
USP4-201ENST00000265560 DYNC2H1Q8NCM8 4307 aaKnown RBP10.99□□□□□ -0.65
USP4-201ENST00000265560 NHLRC4P0CG21 123 aaPredicted RBP10.99□□□□□ -0.65
USP4-201ENST00000265560 KRTAP1-5Q9BYS1 174 aa10.99□□□□□ -0.65
USP4-201ENST00000265560 PRR3P79522 188 aaKnown RBP10.98□□□□□ -0.65
USP4-201ENST00000265560 IBA57-AS1B1ANH7 110 aa10.97□□□□□ -0.65
USP4-201ENST00000265560 KLK5Q9Y337 293 aaPredicted RBP10.97□□□□□ -0.65
USP4-201ENST00000265560 PSMB2P49721 201 aa10.96□□□□□ -0.65
USP4-201ENST00000265560 C15orf56Q8N910 161 aa10.96□□□□□ -0.65
USP4-201ENST00000265560 ZNF561-AS1K7EIQ3 104 aa10.96□□□□□ -0.66
USP4-201ENST00000265560 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.95□□□□□ -0.66
USP4-201ENST00000265560 H3BMG7 143 aa10.95□□□□□ -0.66
USP4-201ENST00000265560 IFITM1P13164 125 aa10.95□□□□□ -0.66
USP4-201ENST00000265560 SND1-IT1Q9HBX3 110 aa10.95□□□□□ -0.66
USP4-201ENST00000265560 SCGB1C2P0DMR2 95 aa10.95□□□□□ -0.66
USP4-201ENST00000265560 RPL13AP40429 203 aaKnown RBP10.95□□□□□ -0.66
USP4-201ENST00000265560 LINC01561Q8N1V8 128 aa10.94□□□□□ -0.66
USP4-201ENST00000265560 A0A0B4J2C4 111 aa10.94□□□□□ -0.66
USP4-201ENST00000265560 K7EP34 96 aa10.94□□□□□ -0.66
USP4-201ENST00000265560 CAMK2N2Q96S95 79 aa10.93□□□□□ -0.66
USP4-201ENST00000265560 C6orf48Q9UBA6 75 aa10.93□□□□□ -0.66
USP4-201ENST00000265560 KMT2AQ03164 3969 aa10.92□□□□□ -0.66
USP4-201ENST00000265560 XAGE1AQ9HD64 81 aa10.92□□□□□ -0.66
USP4-201ENST00000265560 NTN5Q8WTR8 489 aaPredicted RBP10.92□□□□□ -0.66
USP4-201ENST00000265560 Q6ZRU5 148 aa10.91□□□□□ -0.66
USP4-201ENST00000265560 IGKV2-28A0A075B6P5 120 aa10.91□□□□□ -0.66
USP4-201ENST00000265560 IGKV2D-28P01615 120 aa10.91□□□□□ -0.66
USP4-201ENST00000265560 LINC00337Q8N6G1 96 aa10.91□□□□□ -0.66
USP4-201ENST00000265560 GTF2H5Q6ZYL4 71 aa10.91□□□□□ -0.66
USP4-201ENST00000265560 Q8NDZ9 215 aa10.91□□□□□ -0.66
USP4-201ENST00000265560 UPK3BQ9BT76 320 aa10.9□□□□□ -0.66
USP4-201ENST00000265560 M0R2N4 97 aa10.9□□□□□ -0.66
USP4-201ENST00000265560 TRIAP1O43715 76 aa10.9□□□□□ -0.66
USP4-201ENST00000265560 TCL1BO95988 128 aa10.89□□□□□ -0.67
USP4-201ENST00000265560 CXCL5P42830 114 aa10.89□□□□□ -0.67
USP4-201ENST00000265560 NUPR2A6NF83 97 aa10.89□□□□□ -0.67
USP4-201ENST00000265560 OR13C6PQ8NH95 151 aa10.89□□□□□ -0.67
USP4-201ENST00000265560 KRTAP21-3Q3LHN1 58 aa10.88□□□□□ -0.67
USP4-201ENST00000265560 USP17L23D6RBM5 183 aa10.88□□□□□ -0.67
USP4-201ENST00000265560 WFDC2Q14508 124 aa10.88□□□□□ -0.67
USP4-201ENST00000265560 GAGE2EQ4V326 116 aa10.87□□□□□ -0.67
USP4-201ENST00000265560 CLEC2BQ92478 149 aa10.87□□□□□ -0.67
USP4-201ENST00000265560 GAGE2DQ9UEU5 116 aa10.87□□□□□ -0.67
USP4-201ENST00000265560 SLPIP03973 132 aa10.87□□□□□ -0.67
USP4-201ENST00000265560 VPS13DQ5THJ4 4388 aa10.86□□□□□ -0.67
USP4-201ENST00000265560 NCR3O14931 201 aa10.85□□□□□ -0.67
USP4-201ENST00000265560 COPS9Q8WXC6 57 aa10.85□□□□□ -0.67
USP4-201ENST00000265560 PSCAO43653 123 aa10.82□□□□□ -0.68
USP4-201ENST00000265560 COX17Q14061 63 aa10.82□□□□□ -0.68
USP4-201ENST00000265560 SYCNQ0VAF6 134 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms