RNA–Protein interactions for RNA: ENST00000642041.1

PHGDH-234, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 943 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-234ENST00000642041 UBE2D1P51668 147 aa11.94□□□□□ -0.5
PHGDH-234ENST00000642041 HSD52Q0P140 79 aa11.94□□□□□ -0.5
PHGDH-234ENST00000642041 COL5A1-AS1Q5SY13 56 aa11.94□□□□□ -0.5
PHGDH-234ENST00000642041 IGLV5-45A0A087WSX0 123 aa11.93□□□□□ -0.5
PHGDH-234ENST00000642041 TMEM223A0PJW6 202 aa11.93□□□□□ -0.5
PHGDH-234ENST00000642041 LGALS3P17931 250 aaKnown RBP11.93□□□□□ -0.5
PHGDH-234ENST00000642041 C11orf45Q8TAV5 145 aa11.93□□□□□ -0.5
PHGDH-234ENST00000642041 GCSHP23434 173 aa11.92□□□□□ -0.5
PHGDH-234ENST00000642041 C12orf74Q32Q52 190 aa11.92□□□□□ -0.5
PHGDH-234ENST00000642041 LELP1Q5T871 98 aa11.92□□□□□ -0.5
PHGDH-234ENST00000642041 SFTA2Q6UW10 78 aa11.92□□□□□ -0.5
PHGDH-234ENST00000642041 VSIG2Q96IQ7 327 aa11.92□□□□□ -0.5
PHGDH-234ENST00000642041 A0A0J9YWU9 116 aa11.91□□□□□ -0.5
PHGDH-234ENST00000642041 ZNF22P17026 224 aaPredicted RBP11.91□□□□□ -0.5
PHGDH-234ENST00000642041 CELA1Q9UNI1 258 aa11.91□□□□□ -0.5
PHGDH-234ENST00000642041 PKD1P98161 4303 aa11.91□□□□□ -0.5
PHGDH-234ENST00000642041 TRAV8-6A0A0B4J262 113 aa11.9□□□□□ -0.5
PHGDH-234ENST00000642041 IGHV1-58A0A0C4DH39 117 aa11.9□□□□□ -0.5
PHGDH-234ENST00000642041 A0A0J9YXV3 536 aa11.9□□□□□ -0.5
PHGDH-234ENST00000642041 LOC100131303A0A0U1RQF7 123 aa11.9□□□□□ -0.5
PHGDH-234ENST00000642041 Q6ZUT4 128 aa11.9□□□□□ -0.5
PHGDH-234ENST00000642041 LINC01561Q8N1V8 128 aa11.9□□□□□ -0.5
PHGDH-234ENST00000642041 DEFB104AQ8WTQ1 72 aa11.9□□□□□ -0.5
PHGDH-234ENST00000642041 OPRPNQ99935 248 aaPredicted RBP11.9□□□□□ -0.5
PHGDH-234ENST00000642041 A6NDN8 102 aa11.89□□□□□ -0.51
PHGDH-234ENST00000642041 J3QQQ9 107 aa11.89□□□□□ -0.51
PHGDH-234ENST00000642041 FAM104AQ969W3 186 aa11.89□□□□□ -0.51
PHGDH-234ENST00000642041 SNHG12Q9BXW3 62 aa11.89□□□□□ -0.51
PHGDH-234ENST00000642041 TMEM262E9PQX1 116 aa11.88□□□□□ -0.51
PHGDH-234ENST00000642041 SS18Q15532 418 aa11.88□□□□□ -0.51
PHGDH-234ENST00000642041 PCP2Q8IVA1 136 aa11.88□□□□□ -0.51
PHGDH-234ENST00000642041 LINC00469Q8N7U9 141 aa11.88□□□□□ -0.51
PHGDH-234ENST00000642041 C15orf53Q8NAA6 179 aa11.88□□□□□ -0.51
PHGDH-234ENST00000642041 IGKV2D-26A0A0A0MRZ7 120 aa11.87□□□□□ -0.51
PHGDH-234ENST00000642041 TRAV10A0A0B4J240 114 aa11.87□□□□□ -0.51
PHGDH-234ENST00000642041 ZNF815PA8K554 130 aa11.87□□□□□ -0.51
PHGDH-234ENST00000642041 SCGB1D4Q6XE38 83 aa11.87□□□□□ -0.51
PHGDH-234ENST00000642041 Q6ZVH6 145 aa11.87□□□□□ -0.51
PHGDH-234ENST00000642041 A0A0J9YY99 117 aa11.86□□□□□ -0.51
PHGDH-234ENST00000642041 GAGE6Q13070 117 aa11.86□□□□□ -0.51
PHGDH-234ENST00000642041 C2orf91Q6ZV80 131 aa11.86□□□□□ -0.51
PHGDH-234ENST00000642041 COPS9Q8WXC6 57 aa11.86□□□□□ -0.51
PHGDH-234ENST00000642041 TMEM238LA0A1B0GVL6 79 aa11.85□□□□□ -0.51
PHGDH-234ENST00000642041 A6NJY4 79 aa11.85□□□□□ -0.51
PHGDH-234ENST00000642041 HTN3P15516 51 aa11.85□□□□□ -0.51
PHGDH-234ENST00000642041 LINC00242Q5T6M2 205 aa11.85□□□□□ -0.51
PHGDH-234ENST00000642041 DEFB131BA0A096LNP1 70 aa11.84□□□□□ -0.51
PHGDH-234ENST00000642041 A0A096LPF7 62 aa11.84□□□□□ -0.51
PHGDH-234ENST00000642041 MPV17L2Q567V2 206 aa11.84□□□□□ -0.51
PHGDH-234ENST00000642041 ORAOV1Q8WV07 137 aa11.84□□□□□ -0.51
PHGDH-234ENST00000642041 SPANXB1Q9NS25 103 aaPredicted RBP11.84□□□□□ -0.51
PHGDH-234ENST00000642041 IGHV3-30-3P0DP02 117 aa11.83□□□□□ -0.52
PHGDH-234ENST00000642041 RBX1P62877 108 aa11.83□□□□□ -0.52
PHGDH-234ENST00000642041 CIRBPQ14011 172 aaKnown RBP11.83□□□□□ -0.52
PHGDH-234ENST00000642041 BVES-AS1Q5T3Y7 98 aa11.83□□□□□ -0.52
PHGDH-234ENST00000642041 TM2D2Q9BX73 214 aa11.83□□□□□ -0.52
PHGDH-234ENST00000642041 TRAV13-1A0A0B4J241 112 aa11.82□□□□□ -0.52
PHGDH-234ENST00000642041 TMEM238C9JI98 176 aa11.82□□□□□ -0.52
PHGDH-234ENST00000642041 HINT1P49773 126 aaPredicted RBP11.82□□□□□ -0.52
PHGDH-234ENST00000642041 HERV-K104P63124 156 aa11.82□□□□□ -0.52
PHGDH-234ENST00000642041 TIMM17BO60830 172 aa11.81□□□□□ -0.52
PHGDH-234ENST00000642041 LYPD5Q6UWN5 251 aa11.81□□□□□ -0.52
PHGDH-234ENST00000642041 Q6ZTC4 211 aa11.81□□□□□ -0.52
PHGDH-234ENST00000642041 HIST1H4GQ99525 98 aa11.81□□□□□ -0.52
PHGDH-234ENST00000642041 TP73-AS1Q9UF72 201 aa11.81□□□□□ -0.52
PHGDH-234ENST00000642041 TRAV8-4A0A0B4J246 113 aa11.8□□□□□ -0.52
PHGDH-234ENST00000642041 IGLV5-39A0A0G2JS06 123 aa11.8□□□□□ -0.52
PHGDH-234ENST00000642041 NANOS2P60321 138 aaKnown RBP11.8□□□□□ -0.52
PHGDH-234ENST00000642041 SRSF9Q13242 221 aaKnown RBP eCLIP11.8□□□□□ -0.52
PHGDH-234ENST00000642041 BATFQ16520 125 aa11.8□□□□□ -0.52
PHGDH-234ENST00000642041 CEND1Q8N111 149 aa11.8□□□□□ -0.52
PHGDH-234ENST00000642041 CDKN2A-AS1Q9UH64 79 aa11.8□□□□□ -0.52
PHGDH-234ENST00000642041 LINC00959A0A1B0GUT2 108 aa11.79□□□□□ -0.52
PHGDH-234ENST00000642041 MAPKAPK5-AS1Q8N8E1 139 aa11.79□□□□□ -0.52
PHGDH-234ENST00000642041 A0A0J9YXY3 114 aa11.78□□□□□ -0.52
PHGDH-234ENST00000642041 EREGO14944 169 aa11.78□□□□□ -0.52
PHGDH-234ENST00000642041 PTTG1IPP53801 180 aa11.78□□□□□ -0.52
PHGDH-234ENST00000642041 TCTAP57738 103 aa11.78□□□□□ -0.52
PHGDH-234ENST00000642041 RNASE13Q5GAN3 156 aaKnown RBP11.78□□□□□ -0.52
PHGDH-234ENST00000642041 NDUFA12Q9UI09 145 aa11.78□□□□□ -0.52
PHGDH-234ENST00000642041 IGLV4-60A0A075B6I1 120 aa11.77□□□□□ -0.53
PHGDH-234ENST00000642041 A0A087WZ39 114 aa11.77□□□□□ -0.53
PHGDH-234ENST00000642041 NDUFA1O15239 70 aa11.77□□□□□ -0.53
PHGDH-234ENST00000642041 PPDPFQ9H3Y8 114 aa11.77□□□□□ -0.53
PHGDH-234ENST00000642041 DMBT1Q9UGM3 2413 aaPredicted RBP11.77□□□□□ -0.53
PHGDH-234ENST00000642041 IGHV3OR16-9A0A0B4J2B5 98 aa11.76□□□□□ -0.53
PHGDH-234ENST00000642041 K7EP13 123 aa11.76□□□□□ -0.53
PHGDH-234ENST00000642041 CD164L2Q6UWJ8 174 aa11.76□□□□□ -0.53
PHGDH-234ENST00000642041 APOMO95445 188 aa11.75□□□□□ -0.53
PHGDH-234ENST00000642041 ANGP03950 147 aaKnown RBP11.75□□□□□ -0.53
PHGDH-234ENST00000642041 SMIM13P0DJ93 91 aa11.75□□□□□ -0.53
PHGDH-234ENST00000642041 IFITM1P13164 125 aa11.75□□□□□ -0.53
PHGDH-234ENST00000642041 RPL24P83731 157 aaKnown RBP11.75□□□□□ -0.53
PHGDH-234ENST00000642041 RTL8CO15255 209 aa11.74□□□□□ -0.53
PHGDH-234ENST00000642041 REG3AQ06141 175 aa11.74□□□□□ -0.53
PHGDH-234ENST00000642041 LRP1BQ9NZR2 4599 aa11.74□□□□□ -0.53
PHGDH-234ENST00000642041 SMIM1B2RUZ4 78 aa11.73□□□□□ -0.53
PHGDH-234ENST00000642041 SPINK8P0C7L1 97 aa11.73□□□□□ -0.53
PHGDH-234ENST00000642041 CXCL5P42830 114 aa11.73□□□□□ -0.53
PHGDH-234ENST00000642041 COX6A2Q02221 97 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 82.4 ms