RNA–Protein interactions for RNA: ENST00000641597.1

PHGDH-223, Transcript of phosphoglycerate dehydrogenase, human

APPRIS P1 BASIC

Gene PHGDH, Length 2,585 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PHGDH-223	ENST00000641597		H7C423	109 aa		11.9	□□□□□ -0.5
PHGDH-223	ENST00000641597	HERVK_113	P63121	156 aa		11.9	□□□□□ -0.5
PHGDH-223	ENST00000641597	GAGE6	Q13070	117 aa		11.89	□□□□□ -0.51
PHGDH-223	ENST00000641597	PRIMA1	Q86XR5	153 aa		11.89	□□□□□ -0.51
PHGDH-223	ENST00000641597	DAZ2	Q13117	558 aa	Known RBP	11.88	□□□□□ -0.51
PHGDH-223	ENST00000641597	DAZ4	Q86SG3	579 aa	Known RBP	11.88	□□□□□ -0.51
PHGDH-223	ENST00000641597	CSNK1G2-AS1	Q8NCQ2	148 aa		11.88	□□□□□ -0.51
PHGDH-223	ENST00000641597	DAZ3	Q9NR90	486 aa	Known RBP	11.88	□□□□□ -0.51
PHGDH-223	ENST00000641597	IGLV1-51	P01701	117 aa		11.88	□□□□□ -0.51
PHGDH-223	ENST00000641597	IGLV4-60	A0A075B6I1	120 aa		11.87	□□□□□ -0.51
PHGDH-223	ENST00000641597	TRBV10-1	A0A0K0K1A3	114 aa		11.87	□□□□□ -0.51
PHGDH-223	ENST00000641597	MEIG1	Q5JSS6	88 aa		11.87	□□□□□ -0.51
PHGDH-223	ENST00000641597	SPATA3	Q8NHX4	192 aa		11.87	□□□□□ -0.51
PHGDH-223	ENST00000641597	SCGB1A1	P11684	91 aa		11.86	□□□□□ -0.51
PHGDH-223	ENST00000641597	C2orf82	Q6UX34	121 aa		11.86	□□□□□ -0.51
PHGDH-223	ENST00000641597	TRGV4	A0A0C4DH28	118 aa		11.86	□□□□□ -0.51
PHGDH-223	ENST00000641597	TRBV10-2	A0A0K0K1G8	114 aa		11.86	□□□□□ -0.51
PHGDH-223	ENST00000641597	UBE2L6	O14933	153 aa		11.86	□□□□□ -0.51
PHGDH-223	ENST00000641597	DEFB130B	P0DP73	79 aa		11.86	□□□□□ -0.51
PHGDH-223	ENST00000641597	DEFB130A	P0DP74	79 aa		11.86	□□□□□ -0.51
PHGDH-223	ENST00000641597	TMEM243	Q9BU79	118 aa		11.86	□□□□□ -0.51
PHGDH-223	ENST00000641597	CRLF1	O75462	422 aa		11.85	□□□□□ -0.51
PHGDH-223	ENST00000641597	TOMM7	Q9P0U1	55 aa		11.85	□□□□□ -0.51
PHGDH-223	ENST00000641597	KRTAP10-3	P60369	221 aa		11.85	□□□□□ -0.51
PHGDH-223	ENST00000641597	RNASE1	P07998	156 aa	Known RBP	11.84	□□□□□ -0.51
PHGDH-223	ENST00000641597	TIMM17B	O60830	172 aa		11.84	□□□□□ -0.51
PHGDH-223	ENST00000641597	CKS1B	P61024	79 aa		11.84	□□□□□ -0.51
PHGDH-223	ENST00000641597	CIRBP	Q14011	172 aa	Known RBP	11.84	□□□□□ -0.51
PHGDH-223	ENST00000641597	C16orf74	Q96GX8	76 aa		11.84	□□□□□ -0.51
PHGDH-223	ENST00000641597	CSDC2	Q9Y534	153 aa	Known RBP	11.84	□□□□□ -0.51
PHGDH-223	ENST00000641597	KMT2B	Q9UMN6	2715 aa	Predicted RBP	11.84	□□□□□ -0.51
PHGDH-223	ENST00000641597	TRRAP	Q9Y4A5	3859 aa		11.84	□□□□□ -0.51
PHGDH-223	ENST00000641597	ATR	Q13535	2644 aa		11.83	□□□□□ -0.52
PHGDH-223	ENST00000641597	CIDEA	O60543	219 aa		11.82	□□□□□ -0.52
PHGDH-223	ENST00000641597	FHL2	Q14192	279 aa		11.82	□□□□□ -0.52
PHGDH-223	ENST00000641597		A0A096LPF7	62 aa		11.82	□□□□□ -0.52
PHGDH-223	ENST00000641597	LST1	O00453	97 aa		11.82	□□□□□ -0.52
PHGDH-223	ENST00000641597	COX6C	P09669	75 aa		11.82	□□□□□ -0.52
PHGDH-223	ENST00000641597	IFITM1	P13164	125 aa		11.82	□□□□□ -0.52
PHGDH-223	ENST00000641597	CFAP161	Q6P656	301 aa		11.82	□□□□□ -0.52
PHGDH-223	ENST00000641597	CHCHD5	Q9BSY4	110 aa		11.81	□□□□□ -0.52
PHGDH-223	ENST00000641597	UBE2W	Q96B02	151 aa		11.8	□□□□□ -0.52
PHGDH-223	ENST00000641597	FAM19A3	Q7Z5A8	133 aa		11.8	□□□□□ -0.52
PHGDH-223	ENST00000641597	C11orf68	Q9H3H3	251 aa	Known RBP	11.8	□□□□□ -0.52
PHGDH-223	ENST00000641597	C5orf38	Q86SI9	138 aa		11.79	□□□□□ -0.52
PHGDH-223	ENST00000641597	C16orf95	Q9H693	158 aa		11.79	□□□□□ -0.52
PHGDH-223	ENST00000641597	TRBV6-4	A0A1B0GX49	114 aa		11.79	□□□□□ -0.52
PHGDH-223	ENST00000641597	CLPSL2	Q6UWE3	100 aa		11.79	□□□□□ -0.52
PHGDH-223	ENST00000641597	DEFB4A	O15263	64 aa		11.78	□□□□□ -0.52
PHGDH-223	ENST00000641597		M0QXV9	152 aa		11.78	□□□□□ -0.52
PHGDH-223	ENST00000641597	FAM218A	Q96MZ4	157 aa		11.78	□□□□□ -0.52
PHGDH-223	ENST00000641597	OVOL2	Q9BRP0	275 aa		11.78	□□□□□ -0.52
PHGDH-223	ENST00000641597	NSD1	Q96L73	2696 aa	Predicted RBP	11.78	□□□□□ -0.52
PHGDH-223	ENST00000641597	TRBV6-8	A0A0A6YYG3	113 aa		11.77	□□□□□ -0.52
PHGDH-223	ENST00000641597		J3QKU1	62 aa		11.77	□□□□□ -0.52
PHGDH-223	ENST00000641597	LINC00482	Q8N8I6	264 aa		11.77	□□□□□ -0.52
PHGDH-223	ENST00000641597	RNF183	Q96D59	192 aa		11.77	□□□□□ -0.52
PHGDH-223	ENST00000641597	MIR7-3HG	Q8N6C7	128 aa		11.77	□□□□□ -0.53
PHGDH-223	ENST00000641597		A0A1B0GV72	72 aa		11.76	□□□□□ -0.53
PHGDH-223	ENST00000641597	TRAV8-4	A0A0B4J246	113 aa		11.75	□□□□□ -0.53
PHGDH-223	ENST00000641597	HILS1	P60008	231 aa		11.75	□□□□□ -0.53
PHGDH-223	ENST00000641597	TEX29	Q8N6K0	151 aa		11.75	□□□□□ -0.53
PHGDH-223	ENST00000641597	COX7B2	Q8TF08	81 aa		11.75	□□□□□ -0.53
PHGDH-223	ENST00000641597	PFN2	P35080	140 aa		11.75	□□□□□ -0.53
PHGDH-223	ENST00000641597	TTC32	Q5I0X7	151 aa		11.74	□□□□□ -0.53
PHGDH-223	ENST00000641597	SHISA2	Q6UWI4	295 aa		11.74	□□□□□ -0.53
PHGDH-223	ENST00000641597		Q8N3U1	123 aa		11.74	□□□□□ -0.53
PHGDH-223	ENST00000641597	CITED1	Q99966	193 aa		11.74	□□□□□ -0.53
PHGDH-223	ENST00000641597	IGHV3OR16-9	A0A0B4J2B5	98 aa		11.74	□□□□□ -0.53
PHGDH-223	ENST00000641597	TMEM262	E9PQX1	116 aa		11.74	□□□□□ -0.53
PHGDH-223	ENST00000641597	LINC00337	Q8N6G1	96 aa		11.74	□□□□□ -0.53
PHGDH-223	ENST00000641597	IGKV2-28	A0A075B6P5	120 aa		11.73	□□□□□ -0.53
PHGDH-223	ENST00000641597	COX7A2L	O14548	114 aa		11.73	□□□□□ -0.53
PHGDH-223	ENST00000641597	IGKV2D-28	P01615	120 aa		11.73	□□□□□ -0.53
PHGDH-223	ENST00000641597	GYPE	P15421	78 aa		11.73	□□□□□ -0.53
PHGDH-223	ENST00000641597		Q9HAA7	133 aa		11.73	□□□□□ -0.53
PHGDH-223	ENST00000641597	HIVEP1	P15822	2718 aa		11.73	□□□□□ -0.53
PHGDH-223	ENST00000641597		H3BT86	120 aa		11.73	□□□□□ -0.53
PHGDH-223	ENST00000641597	PF4	P02776	101 aa		11.73	□□□□□ -0.53
PHGDH-223	ENST00000641597	XCL1	P47992	114 aa		11.73	□□□□□ -0.53
PHGDH-223	ENST00000641597	TRAV26-1	A0A087WT03	109 aa		11.72	□□□□□ -0.53
PHGDH-223	ENST00000641597	LINC00158	P58513	81 aa		11.72	□□□□□ -0.53
PHGDH-223	ENST00000641597	C15orf53	Q8NAA6	179 aa		11.72	□□□□□ -0.53
PHGDH-223	ENST00000641597	LINC01600	Q96MT4	127 aa		11.72	□□□□□ -0.53
PHGDH-223	ENST00000641597	TEP1	Q99973	2627 aa	Known RBP	11.71	□□□□□ -0.54
PHGDH-223	ENST00000641597	FAM110A	Q9BQ89	295 aa		11.71	□□□□□ -0.54
PHGDH-223	ENST00000641597	CMC4	P56277	68 aa	Predicted RBP	11.7	□□□□□ -0.54
PHGDH-223	ENST00000641597	SND1-IT1	Q9HBX3	110 aa		11.7	□□□□□ -0.54
PHGDH-223	ENST00000641597		X6R8D5	127 aa		11.7	□□□□□ -0.54
PHGDH-223	ENST00000641597	SNCG	O76070	127 aa		11.7	□□□□□ -0.54
PHGDH-223	ENST00000641597	HERV-K104	P63124	156 aa		11.7	□□□□□ -0.54
PHGDH-223	ENST00000641597	LINC00959	A0A1B0GUT2	108 aa		11.69	□□□□□ -0.54
PHGDH-223	ENST00000641597	CCL18	P55774	89 aa		11.69	□□□□□ -0.54
PHGDH-223	ENST00000641597	C22orf24	Q9Y442	160 aa		11.69	□□□□□ -0.54
PHGDH-223	ENST00000641597	PKD1L1	Q8TDX9	2849 aa		11.68	□□□□□ -0.54
PHGDH-223	ENST00000641597	DEFB135	Q30KP9	77 aa		11.67	□□□□□ -0.54
PHGDH-223	ENST00000641597	NHLRC4	P0CG21	123 aa	Predicted RBP	11.67	□□□□□ -0.54
PHGDH-223	ENST00000641597	FAM222A	Q5U5X8	452 aa		11.67	□□□□□ -0.54
PHGDH-223	ENST00000641597		A0A087WZ39	114 aa		11.66	□□□□□ -0.54
PHGDH-223	ENST00000641597	GAGE2B	Q13066	116 aa		11.66	□□□□□ -0.54

Retrieved 100 of 20,778 RNA–protein pairs in 612.9 ms