RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 C12orf74Q32Q52 190 aa9.85□□□□□ -0.83
LIG3-205ENST00000585941 C10orf126Q8N4M7 172 aa9.85□□□□□ -0.83
LIG3-205ENST00000585941 NDUFA1O15239 70 aa9.84□□□□□ -0.83
LIG3-205ENST00000585941 IGHV3-30P01768 117 aa9.84□□□□□ -0.83
LIG3-205ENST00000585941 IGHV3-30-5P0DP03 117 aa9.84□□□□□ -0.83
LIG3-205ENST00000585941 SMIM1B2RUZ4 78 aa9.83□□□□□ -0.84
LIG3-205ENST00000585941 TIMM17BO60830 172 aa9.83□□□□□ -0.84
LIG3-205ENST00000585941 RBX1P62877 108 aa9.83□□□□□ -0.84
LIG3-205ENST00000585941 RAB37Q96AX2 223 aa9.83□□□□□ -0.84
LIG3-205ENST00000585941 RETNQ9HD89 108 aa9.83□□□□□ -0.84
LIG3-205ENST00000585941 A0A096LPF7 62 aa9.83□□□□□ -0.84
LIG3-205ENST00000585941 H3BUT2 72 aa9.83□□□□□ -0.84
LIG3-205ENST00000585941 RPL24P83731 157 aaKnown RBP9.82□□□□□ -0.84
LIG3-205ENST00000585941 SS18Q15532 418 aa9.82□□□□□ -0.84
LIG3-205ENST00000585941 LELP1Q5T871 98 aa9.82□□□□□ -0.84
LIG3-205ENST00000585941 CMYA5Q8N3K9 4069 aa9.81□□□□□ -0.84
LIG3-205ENST00000585941 LINC00959A0A1B0GUT2 108 aa9.81□□□□□ -0.84
LIG3-205ENST00000585941 CIRBPQ14011 172 aaKnown RBP9.81□□□□□ -0.84
LIG3-205ENST00000585941 SPANXDQ9BXN6 97 aa9.81□□□□□ -0.84
LIG3-205ENST00000585941 SPANXCQ9NY87 97 aa9.81□□□□□ -0.84
LIG3-205ENST00000585941 IGHV3OR16-9A0A0B4J2B5 98 aa9.8□□□□□ -0.84
LIG3-205ENST00000585941 A0A1W2PPM0 123 aa9.8□□□□□ -0.84
LIG3-205ENST00000585941 K7ERJ3 54 aa9.8□□□□□ -0.84
LIG3-205ENST00000585941 FABP2P12104 132 aa9.8□□□□□ -0.84
LIG3-205ENST00000585941 HERV-K104P63124 156 aa9.8□□□□□ -0.84
LIG3-205ENST00000585941 GTF2H5Q6ZYL4 71 aa9.8□□□□□ -0.84
LIG3-205ENST00000585941 LITAFQ99732 161 aa9.8□□□□□ -0.84
LIG3-205ENST00000585941 SPATA25Q9BR10 227 aa9.8□□□□□ -0.84
LIG3-205ENST00000585941 A0A087WZ39 114 aa9.79□□□□□ -0.84
LIG3-205ENST00000585941 IGKV3OR2-268A0A0C4DH90 116 aa9.79□□□□□ -0.84
LIG3-205ENST00000585941 KPRPQ5T749 579 aaPredicted RBP9.79□□□□□ -0.84
LIG3-205ENST00000585941 LINC01561Q8N1V8 128 aa9.79□□□□□ -0.84
LIG3-205ENST00000585941 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.78□□□□□ -0.84
LIG3-205ENST00000585941 GAGE10A6NGK3 116 aa9.78□□□□□ -0.84
LIG3-205ENST00000585941 IGLL5B9A064 214 aa9.78□□□□□ -0.84
LIG3-205ENST00000585941 IFITM1P13164 125 aa9.78□□□□□ -0.84
LIG3-205ENST00000585941 MIAQ16674 131 aa9.78□□□□□ -0.84
LIG3-205ENST00000585941 SFTA2Q6UW10 78 aa9.78□□□□□ -0.84
LIG3-205ENST00000585941 COPS9Q8WXC6 57 aa9.78□□□□□ -0.84
LIG3-205ENST00000585941 Q9H8V8 135 aa9.78□□□□□ -0.84
LIG3-205ENST00000585941 DNAH3Q8TD57 4116 aa9.77□□□□□ -0.85
LIG3-205ENST00000585941 A0A0J9YWU9 116 aa9.77□□□□□ -0.85
LIG3-205ENST00000585941 Q6ZTC4 211 aa9.77□□□□□ -0.85
LIG3-205ENST00000585941 MUSTN1Q8IVN3 82 aa9.77□□□□□ -0.85
LIG3-205ENST00000585941 C11orf45Q8TAV5 145 aa9.77□□□□□ -0.85
LIG3-205ENST00000585941 COX7B2Q8TF08 81 aa9.77□□□□□ -0.85
LIG3-205ENST00000585941 ZNF625Q96I27 306 aaPredicted RBP9.77□□□□□ -0.85
LIG3-205ENST00000585941 NOTCH1P46531 2555 aa9.76□□□□□ -0.85
LIG3-205ENST00000585941 K7EP34 96 aa9.76□□□□□ -0.85
LIG3-205ENST00000585941 PRSS2P07478 247 aa9.76□□□□□ -0.85
LIG3-205ENST00000585941 TM2D3Q9BRN9 247 aa9.76□□□□□ -0.85
LIG3-205ENST00000585941 A0A0B4J2C4 111 aa9.75□□□□□ -0.85
LIG3-205ENST00000585941 A4D1N5 150 aa9.75□□□□□ -0.85
LIG3-205ENST00000585941 APOMO95445 188 aa9.75□□□□□ -0.85
LIG3-205ENST00000585941 ANGP03950 147 aaKnown RBP9.75□□□□□ -0.85
LIG3-205ENST00000585941 CFC1BP0CG36 223 aa9.75□□□□□ -0.85
LIG3-205ENST00000585941 CFC1P0CG37 223 aa9.75□□□□□ -0.85
LIG3-205ENST00000585941 LYPD5Q6UWN5 251 aa9.75□□□□□ -0.85
LIG3-205ENST00000585941 NAA38Q9BRA0 125 aaKnown RBP9.75□□□□□ -0.85
LIG3-205ENST00000585941 K7EIL1 84 aa9.74□□□□□ -0.85
LIG3-205ENST00000585941 LINC00269Q8N2A0 174 aa9.74□□□□□ -0.85
LIG3-205ENST00000585941 PGPEP1Q9NXJ5 209 aa9.74□□□□□ -0.85
LIG3-205ENST00000585941 PRO1854Q9UHT4 67 aa9.74□□□□□ -0.85
LIG3-205ENST00000585941 SPCS1Q9Y6A9 102 aa9.74□□□□□ -0.85
LIG3-205ENST00000585941 REG3AQ06141 175 aa9.74□□□□□ -0.85
LIG3-205ENST00000585941 ADAMTSL4-AS1Q5T5F5 129 aa9.74□□□□□ -0.85
LIG3-205ENST00000585941 LYRM7Q5U5X0 104 aa9.74□□□□□ -0.85
LIG3-205ENST00000585941 CD164L2Q6UWJ8 174 aa9.74□□□□□ -0.85
LIG3-205ENST00000585941 PPDPFQ9H3Y8 114 aa9.74□□□□□ -0.85
LIG3-205ENST00000585941 ANK2Q01484 3957 aa9.73□□□□□ -0.85
LIG3-205ENST00000585941 DEFB131BA0A096LNP1 70 aa9.73□□□□□ -0.85
LIG3-205ENST00000585941 XCL1P47992 114 aa9.73□□□□□ -0.85
LIG3-205ENST00000585941 NBEAL1Q6ZS30 2694 aa9.73□□□□□ -0.85
LIG3-205ENST00000585941 DEFB121Q5J5C9 76 aa9.72□□□□□ -0.85
LIG3-205ENST00000585941 C5orf38Q86SI9 138 aa9.72□□□□□ -0.85
LIG3-205ENST00000585941 NANOS2P60321 138 aaKnown RBP9.71□□□□□ -0.85
LIG3-205ENST00000585941 MEIG1Q5JSS6 88 aa9.71□□□□□ -0.85
LIG3-205ENST00000585941 TOMM7Q9P0U1 55 aa9.71□□□□□ -0.85
LIG3-205ENST00000585941 COX7A2LO14548 114 aa9.71□□□□□ -0.86
LIG3-205ENST00000585941 TSPAN13O95857 204 aa9.71□□□□□ -0.86
LIG3-205ENST00000585941 CLPSL2Q6UWE3 100 aa9.71□□□□□ -0.86
LIG3-205ENST00000585941 CHCHD10Q8WYQ3 142 aaPredicted RBP9.71□□□□□ -0.86
LIG3-205ENST00000585941 PRB2P02812 416 aaPredicted RBP9.7□□□□□ -0.86
LIG3-205ENST00000585941 Q8IZM0 81 aa9.7□□□□□ -0.86
LIG3-205ENST00000585941 MDFIQ99750 246 aa9.7□□□□□ -0.86
LIG3-205ENST00000585941 PRR34Q9NV39 138 aa9.7□□□□□ -0.86
LIG3-205ENST00000585941 TRAV10A0A0B4J240 114 aa9.69□□□□□ -0.86
LIG3-205ENST00000585941 C6orf226Q5I0X4 101 aa9.69□□□□□ -0.86
LIG3-205ENST00000585941 TENM3Q9P273 2699 aa9.69□□□□□ -0.86
LIG3-205ENST00000585941 LINC00308Q8TCZ7 52 aa9.68□□□□□ -0.86
LIG3-205ENST00000585941 ERG28Q9UKR5 140 aa9.68□□□□□ -0.86
LIG3-205ENST00000585941 TRAV8-4A0A0B4J246 113 aa9.67□□□□□ -0.86
LIG3-205ENST00000585941 IBA57-AS1B1ANH7 110 aa9.67□□□□□ -0.86
LIG3-205ENST00000585941 IGHV3-33P01772 117 aa9.67□□□□□ -0.86
LIG3-205ENST00000585941 C15orf53Q8NAA6 179 aa9.67□□□□□ -0.86
LIG3-205ENST00000585941 MGAM2Q2M2H8 2515 aa9.67□□□□□ -0.86
LIG3-205ENST00000585941 CXCL5P42830 114 aa9.67□□□□□ -0.86
LIG3-205ENST00000585941 Q8N3U1 123 aa9.67□□□□□ -0.86
LIG3-205ENST00000585941 MRAPQ8TCY5 172 aa9.67□□□□□ -0.86
LIG3-205ENST00000585941 KLK12Q9UKR0 248 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 135.4 ms