RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 CHCHD7Q9BUK0 85 aa9.59□□□□□ -0.87
VPS4A-204ENST00000566354 UBE2D4Q9Y2X8 147 aa9.59□□□□□ -0.87
VPS4A-204ENST00000566354 TRIAP1O43715 76 aa9.58□□□□□ -0.88
VPS4A-204ENST00000566354 ZNF415Q09FC8 603 aa9.58□□□□□ -0.88
VPS4A-204ENST00000566354 ADAMTSL4-AS1Q5T5F5 129 aa9.58□□□□□ -0.88
VPS4A-204ENST00000566354 TRBV10-2A0A0K0K1G8 114 aa9.57□□□□□ -0.88
VPS4A-204ENST00000566354 KRTAP10-3P60369 221 aa9.57□□□□□ -0.88
VPS4A-204ENST00000566354 MIAQ16674 131 aa9.57□□□□□ -0.88
VPS4A-204ENST00000566354 C9orf153Q5TBE3 101 aa9.57□□□□□ -0.88
VPS4A-204ENST00000566354 LOC107984640A0A0U1RRK4 108 aa9.57□□□□□ -0.88
VPS4A-204ENST00000566354 RPL13AP40429 203 aaKnown RBP9.57□□□□□ -0.88
VPS4A-204ENST00000566354 RNASE13Q5GAN3 156 aaKnown RBP9.57□□□□□ -0.88
VPS4A-204ENST00000566354 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.57□□□□□ -0.88
VPS4A-204ENST00000566354 NTN5Q8WTR8 489 aaPredicted RBP9.57□□□□□ -0.88
VPS4A-204ENST00000566354 COX6CP09669 75 aa9.56□□□□□ -0.88
VPS4A-204ENST00000566354 ICOSQ9Y6W8 199 aa9.56□□□□□ -0.88
VPS4A-204ENST00000566354 V9GYY9 64 aa9.56□□□□□ -0.88
VPS4A-204ENST00000566354 Q6ZSN1 163 aa9.56□□□□□ -0.88
VPS4A-204ENST00000566354 Q9UF83 564 aa9.56□□□□□ -0.88
VPS4A-204ENST00000566354 RBMY1BA6NDE4 496 aaKnown RBP9.55□□□□□ -0.88
VPS4A-204ENST00000566354 RBMY1EA6NEQ0 496 aaKnown RBP9.55□□□□□ -0.88
VPS4A-204ENST00000566354 TIMM17BO60830 172 aa9.55□□□□□ -0.88
VPS4A-204ENST00000566354 RBMY1DP0C7P1 496 aaKnown RBP9.55□□□□□ -0.88
VPS4A-204ENST00000566354 FAM240AA0A1B0GVK7 77 aa9.55□□□□□ -0.88
VPS4A-204ENST00000566354 IGHV3-53P01767 116 aa9.55□□□□□ -0.88
VPS4A-204ENST00000566354 PRM2P04554 102 aa9.55□□□□□ -0.88
VPS4A-204ENST00000566354 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.54□□□□□ -0.88
VPS4A-204ENST00000566354 IGKV2-29A2NJV5 120 aaPredicted RBP9.54□□□□□ -0.88
VPS4A-204ENST00000566354 CRYGAP11844 174 aa9.54□□□□□ -0.88
VPS4A-204ENST00000566354 LINC00467Q9BRT7 94 aa9.54□□□□□ -0.88
VPS4A-204ENST00000566354 NACAE9PAV3 2078 aa9.54□□□□□ -0.88
VPS4A-204ENST00000566354 FBN1P35555 2871 aaKnown RBP9.54□□□□□ -0.88
VPS4A-204ENST00000566354 A8MZ25 164 aa9.54□□□□□ -0.88
VPS4A-204ENST00000566354 TMEM258P61165 79 aa9.54□□□□□ -0.88
VPS4A-204ENST00000566354 BEAN1Q3B7T3 259 aa9.54□□□□□ -0.88
VPS4A-204ENST00000566354 VWFP04275 2813 aa9.54□□□□□ -0.88
VPS4A-204ENST00000566354 TEX49A0A1B0GTD5 131 aa9.53□□□□□ -0.88
VPS4A-204ENST00000566354 TIRAPP58753 221 aa9.53□□□□□ -0.88
VPS4A-204ENST00000566354 TMEM61Q8N0U2 210 aa9.53□□□□□ -0.88
VPS4A-204ENST00000566354 C11orf72Q8NBR9 251 aa9.53□□□□□ -0.88
VPS4A-204ENST00000566354 PEMTQ9UBM1 199 aa9.53□□□□□ -0.88
VPS4A-204ENST00000566354 CCL24O00175 119 aa9.53□□□□□ -0.88
VPS4A-204ENST00000566354 C2orf82Q6UX34 121 aa9.53□□□□□ -0.88
VPS4A-204ENST00000566354 IGLV5-45A0A087WSX0 123 aa9.52□□□□□ -0.89
VPS4A-204ENST00000566354 H3BT86 120 aa9.52□□□□□ -0.89
VPS4A-204ENST00000566354 UBE2WQ96B02 151 aa9.52□□□□□ -0.89
VPS4A-204ENST00000566354 CDKN2A-AS1Q9UH64 79 aa9.52□□□□□ -0.89
VPS4A-204ENST00000566354 H7C423 109 aa9.51□□□□□ -0.89
VPS4A-204ENST00000566354 NDUFA1O15239 70 aa9.51□□□□□ -0.89
VPS4A-204ENST00000566354 TRAV8-4A0A0B4J246 113 aa9.51□□□□□ -0.89
VPS4A-204ENST00000566354 IGHV3-38A0A0C4DH36 116 aa9.51□□□□□ -0.89
VPS4A-204ENST00000566354 NPC2P61916 151 aa9.51□□□□□ -0.89
VPS4A-204ENST00000566354 CIRBPQ14011 172 aaKnown RBP9.51□□□□□ -0.89
VPS4A-204ENST00000566354 C15orf53Q8NAA6 179 aa9.51□□□□□ -0.89
VPS4A-204ENST00000566354 MAP6D1Q9H9H5 199 aa9.51□□□□□ -0.89
VPS4A-204ENST00000566354 INSP01308 110 aa9.5□□□□□ -0.89
VPS4A-204ENST00000566354 DGAT2L7PQ6IED9 249 aa9.5□□□□□ -0.89
VPS4A-204ENST00000566354 LST1O00453 97 aa9.5□□□□□ -0.89
VPS4A-204ENST00000566354 GAGE2AQ6NT46 116 aa9.49□□□□□ -0.89
VPS4A-204ENST00000566354 PRIMA1Q86XR5 153 aa9.49□□□□□ -0.89
VPS4A-204ENST00000566354 STAB1Q9NY15 2570 aa9.49□□□□□ -0.89
VPS4A-204ENST00000566354 KRTAP24-1Q3LI83 254 aa9.49□□□□□ -0.89
VPS4A-204ENST00000566354 C6orf226Q5I0X4 101 aa9.49□□□□□ -0.89
VPS4A-204ENST00000566354 DYNLRB2Q8TF09 96 aa9.48□□□□□ -0.89
VPS4A-204ENST00000566354 CLEC2BQ92478 149 aa9.48□□□□□ -0.89
VPS4A-204ENST00000566354 NOTCH3Q9UM47 2321 aa9.48□□□□□ -0.89
VPS4A-204ENST00000566354 IGHV3OR16-12A0A075B7B8 117 aa9.47□□□□□ -0.89
VPS4A-204ENST00000566354 IGLV5-39A0A0G2JS06 123 aa9.47□□□□□ -0.89
VPS4A-204ENST00000566354 DEFB114Q30KQ6 69 aa9.47□□□□□ -0.89
VPS4A-204ENST00000566354 Q5XG85 94 aa9.47□□□□□ -0.89
VPS4A-204ENST00000566354 DAND5Q8N907 189 aa9.47□□□□□ -0.89
VPS4A-204ENST00000566354 COL6A5A8TX70 2615 aa9.47□□□□□ -0.89
VPS4A-204ENST00000566354 COX7CP15954 63 aa9.47□□□□□ -0.89
VPS4A-204ENST00000566354 COX6A2Q02221 97 aa9.46□□□□□ -0.9
VPS4A-204ENST00000566354 DEFB121Q5J5C9 76 aa9.46□□□□□ -0.9
VPS4A-204ENST00000566354 LINC00242Q5T6M2 205 aa9.46□□□□□ -0.9
VPS4A-204ENST00000566354 FAM19A3Q7Z5A8 133 aa9.46□□□□□ -0.9
VPS4A-204ENST00000566354 COPS9Q8WXC6 57 aa9.46□□□□□ -0.9
VPS4A-204ENST00000566354 DPH3Q96FX2 82 aa9.46□□□□□ -0.9
VPS4A-204ENST00000566354 TRRAPQ9Y4A5 3859 aa9.46□□□□□ -0.9
VPS4A-204ENST00000566354 LINC00308Q8TCZ7 52 aa9.45□□□□□ -0.9
VPS4A-204ENST00000566354 Q9H8V8 135 aa9.45□□□□□ -0.9
VPS4A-204ENST00000566354 CHCHD5Q9BSY4 110 aa9.44□□□□□ -0.9
VPS4A-204ENST00000566354 XCL2Q9UBD3 114 aa9.44□□□□□ -0.9
VPS4A-204ENST00000566354 TRBV10-1A0A0K0K1A3 114 aa9.43□□□□□ -0.9
VPS4A-204ENST00000566354 TRACP01848 142 aa9.43□□□□□ -0.9
VPS4A-204ENST00000566354 ACYP1P07311 99 aa9.43□□□□□ -0.9
VPS4A-204ENST00000566354 RPL36AP83881 106 aaKnown RBP9.43□□□□□ -0.9
VPS4A-204ENST00000566354 RPL36ALQ969Q0 106 aaKnown RBP9.43□□□□□ -0.9
VPS4A-204ENST00000566354 C1orf43Q9BWL3 253 aa9.43□□□□□ -0.9
VPS4A-204ENST00000566354 TRGV1A0A0A0MS02 117 aa9.42□□□□□ -0.9
VPS4A-204ENST00000566354 SMIM1B2RUZ4 78 aa9.42□□□□□ -0.9
VPS4A-204ENST00000566354 DAZ2Q13117 558 aaKnown RBP9.42□□□□□ -0.9
VPS4A-204ENST00000566354 HRCT1Q6UXD1 115 aa9.42□□□□□ -0.9
VPS4A-204ENST00000566354 DAZ4Q86SG3 579 aaKnown RBP9.42□□□□□ -0.9
VPS4A-204ENST00000566354 SPATA3Q8NHX4 192 aa9.42□□□□□ -0.9
VPS4A-204ENST00000566354 IL17DQ8TAD2 202 aa9.42□□□□□ -0.9
VPS4A-204ENST00000566354 DAZ3Q9NR90 486 aaKnown RBP9.42□□□□□ -0.9
VPS4A-204ENST00000566354 CXCL5P42830 114 aa9.42□□□□□ -0.9
VPS4A-204ENST00000566354 STHQ8IWL8 128 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 77.9 ms