RNA–Protein interactions for RNA: ENST00000564970.1

PTPN9-204, Transcript of protein tyrosine phosphatase, non-receptor type 9, humanhuman

TSL 5

Gene PTPN9, Length 726 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9-204ENST00000564970 ZNRF1Q8ND25 227 aa4.48□□□□□ -1.69
PTPN9-204ENST00000564970 CDC42SE1Q9NRR8 79 aa4.48□□□□□ -1.69
PTPN9-204ENST00000564970 CELSR3Q9NYQ7 3312 aa4.48□□□□□ -1.69
PTPN9-204ENST00000564970 IGLV11-55A0A075B6I3 123 aa4.47□□□□□ -1.69
PTPN9-204ENST00000564970 IGHV3-64A0A075B6Q5 118 aa4.47□□□□□ -1.69
PTPN9-204ENST00000564970 TRAV10A0A0B4J240 114 aa4.47□□□□□ -1.69
PTPN9-204ENST00000564970 NCR3O14931 201 aa4.47□□□□□ -1.69
PTPN9-204ENST00000564970 GNRH2O43555 120 aa4.47□□□□□ -1.69
PTPN9-204ENST00000564970 PSCAO43653 123 aa4.47□□□□□ -1.69
PTPN9-204ENST00000564970 IGHV3-9P01782 118 aa4.47□□□□□ -1.69
PTPN9-204ENST00000564970 Q6ZSV7 163 aa4.47□□□□□ -1.69
PTPN9-204ENST00000564970 Q8NA96 180 aa4.47□□□□□ -1.69
PTPN9-204ENST00000564970 LEAP2Q969E1 77 aa4.47□□□□□ -1.69
PTPN9-204ENST00000564970 GAFA1Q96PS6 74 aa4.47□□□□□ -1.69
PTPN9-204ENST00000564970 OCR1Q9BZK8 76 aa4.47□□□□□ -1.69
PTPN9-204ENST00000564970 Q9H8V8 135 aa4.47□□□□□ -1.69
PTPN9-204ENST00000564970 NOTCH2Q04721 2471 aa4.47□□□□□ -1.69
PTPN9-204ENST00000564970 A0A087WYN8 130 aa4.46□□□□□ -1.7
PTPN9-204ENST00000564970 LOC101927531A0A1B0GV80 90 aa4.46□□□□□ -1.7
PTPN9-204ENST00000564970 IGKV2-29A2NJV5 120 aaPredicted RBP4.46□□□□□ -1.7
PTPN9-204ENST00000564970 F5H697 171 aa4.46□□□□□ -1.7
PTPN9-204ENST00000564970 IGLV1-44P01699 117 aa4.46□□□□□ -1.7
PTPN9-204ENST00000564970 RNASE3P12724 160 aaKnown RBP4.46□□□□□ -1.7
PTPN9-204ENST00000564970 GNLYP22749 145 aa4.46□□□□□ -1.7
PTPN9-204ENST00000564970 KRTAP21-3Q3LHN1 58 aa4.46□□□□□ -1.7
PTPN9-204ENST00000564970 Q6ZS52 159 aa4.46□□□□□ -1.7
PTPN9-204ENST00000564970 ZFAND2AQ8N6M9 145 aa4.46□□□□□ -1.7
PTPN9-204ENST00000564970 SMIM11BQ8TCY0 68 aa4.46□□□□□ -1.7
PTPN9-204ENST00000564970 CCL17Q92583 94 aa4.46□□□□□ -1.7
PTPN9-204ENST00000564970 SND1-IT1Q9HBX3 110 aa4.46□□□□□ -1.7
PTPN9-204ENST00000564970 FREM1Q5H8C1 2179 aa4.46□□□□□ -1.7
PTPN9-204ENST00000564970 ARFGEF3Q5TH69 2177 aa4.46□□□□□ -1.7
PTPN9-204ENST00000564970 SETD2Q9BYW2 2564 aaPredicted RBP4.45□□□□□ -1.7
PTPN9-204ENST00000564970 HAMPP81172 84 aa4.45□□□□□ -1.7
PTPN9-204ENST00000564970 RPL36AP83881 106 aaKnown RBP4.45□□□□□ -1.7
PTPN9-204ENST00000564970 Q5VV11 94 aa4.45□□□□□ -1.7
PTPN9-204ENST00000564970 SPANXA2-OT1Q8N9U9 137 aa4.45□□□□□ -1.7
PTPN9-204ENST00000564970 C1orf64Q8NEQ6 169 aa4.45□□□□□ -1.7
PTPN9-204ENST00000564970 NPBQ8NG41 125 aa4.45□□□□□ -1.7
PTPN9-204ENST00000564970 MUC7Q8TAX7 377 aa4.45□□□□□ -1.7
PTPN9-204ENST00000564970 RPL36ALQ969Q0 106 aaKnown RBP4.45□□□□□ -1.7
PTPN9-204ENST00000564970 Q9BRP9 147 aa4.45□□□□□ -1.7
PTPN9-204ENST00000564970 SEC16AO15027 2179 aa4.45□□□□□ -1.7
PTPN9-204ENST00000564970 DSCAML1Q8TD84 2053 aa4.45□□□□□ -1.7
PTPN9-204ENST00000564970 ZFHX3Q15911 3703 aa4.44□□□□□ -1.7
PTPN9-204ENST00000564970 TRBV10-1A0A0K0K1A3 114 aa4.44□□□□□ -1.7
PTPN9-204ENST00000564970 C16orf90A8MZG2 172 aa4.44□□□□□ -1.7
PTPN9-204ENST00000564970 HCG22E2RYF7 251 aa4.44□□□□□ -1.7
PTPN9-204ENST00000564970 CHKB-CPT1BH3BT56 60 aa4.44□□□□□ -1.7
PTPN9-204ENST00000564970 LINC01565O15544 149 aa4.44□□□□□ -1.7
PTPN9-204ENST00000564970 PRB1P04280 392 aa4.44□□□□□ -1.7
PTPN9-204ENST00000564970 MP68P56378 58 aa4.44□□□□□ -1.7
PTPN9-204ENST00000564970 LINC01554Q52M75 96 aa4.44□□□□□ -1.7
PTPN9-204ENST00000564970 SEM1Q6ZVN7 128 aa4.44□□□□□ -1.7
PTPN9-204ENST00000564970 Q8N814 137 aa4.44□□□□□ -1.7
PTPN9-204ENST00000564970 ITLN2Q8WWU7 325 aaPredicted RBP4.44□□□□□ -1.7
PTPN9-204ENST00000564970 IGHV1OR15-1A0A075B7D0 117 aa4.43□□□□□ -1.7
PTPN9-204ENST00000564970 IGHV3-21A0A0B4J1V1 117 aa4.43□□□□□ -1.7
PTPN9-204ENST00000564970 PRAC2D3DTV9 90 aa4.43□□□□□ -1.7
PTPN9-204ENST00000564970 C5orf67F2Z3F1 127 aa4.43□□□□□ -1.7
PTPN9-204ENST00000564970 H3BPC8 53 aa4.43□□□□□ -1.7
PTPN9-204ENST00000564970 PRM2P04554 102 aa4.43□□□□□ -1.7
PTPN9-204ENST00000564970 IGHV4-31P0DP07 118 aa4.43□□□□□ -1.7
PTPN9-204ENST00000564970 IGHV4-38-2P0DP08 117 aa4.43□□□□□ -1.7
PTPN9-204ENST00000564970 NTM-AS1Q6ZSK4 140 aa4.43□□□□□ -1.7
PTPN9-204ENST00000564970 WFDC9Q8NEX5 89 aa4.43□□□□□ -1.7
PTPN9-204ENST00000564970 POLQO75417 2590 aa4.42□□□□□ -1.7
PTPN9-204ENST00000564970 IGLV3-9A0A075B6K5 115 aa4.42□□□□□ -1.7
PTPN9-204ENST00000564970 TRBV6-4A0A1B0GX49 114 aa4.42□□□□□ -1.7
PTPN9-204ENST00000564970 KLLNB2CW77 178 aa4.42□□□□□ -1.7
PTPN9-204ENST00000564970 J3QKU1 62 aa4.42□□□□□ -1.7
PTPN9-204ENST00000564970 PSPHP1O15172 72 aa4.42□□□□□ -1.7
PTPN9-204ENST00000564970 NDPQ00604 133 aa4.42□□□□□ -1.7
PTPN9-204ENST00000564970 C9orf129Q5T035 196 aaKnown RBP4.42□□□□□ -1.7
PTPN9-204ENST00000564970 LINC00337Q8N6G1 96 aa4.42□□□□□ -1.7
PTPN9-204ENST00000564970 C11orf72Q8NBR9 251 aa4.42□□□□□ -1.7
PTPN9-204ENST00000564970 ZCCHC13Q8WW36 166 aaKnown RBP4.42□□□□□ -1.7
PTPN9-204ENST00000564970 KAAG1Q9UBP8 84 aa4.42□□□□□ -1.7
PTPN9-204ENST00000564970 SMIM1B2RUZ4 78 aa4.41□□□□□ -1.7
PTPN9-204ENST00000564970 F8W735 103 aaPredicted RBP4.41□□□□□ -1.7
PTPN9-204ENST00000564970 C3orf84H3BNL1 204 aa4.41□□□□□ -1.7
PTPN9-204ENST00000564970 DEFB103AP81534 67 aa4.41□□□□□ -1.7
PTPN9-204ENST00000564970 C9orf116Q5BN46 136 aaPredicted RBP4.41□□□□□ -1.7
PTPN9-204ENST00000564970 CDC42SE2Q9NRR3 84 aa4.41□□□□□ -1.7
PTPN9-204ENST00000564970 CDKN2A-AS1Q9UH64 79 aa4.41□□□□□ -1.7
PTPN9-204ENST00000564970 ZNF580Q9UK33 172 aa4.41□□□□□ -1.7
PTPN9-204ENST00000564970 FLNCQ14315 2725 aa4.41□□□□□ -1.7
PTPN9-204ENST00000564970 COL27A1Q8IZC6 1860 aaPredicted RBP4.41□□□□□ -1.7
PTPN9-204ENST00000564970 CREBBPQ92793 2442 aa4.4□□□□□ -1.7
PTPN9-204ENST00000564970 IGKV2-28A0A075B6P5 120 aa4.4□□□□□ -1.71
PTPN9-204ENST00000564970 IGHV3-38A0A0C4DH36 116 aa4.4□□□□□ -1.71
PTPN9-204ENST00000564970 H0Y9J4 135 aa4.4□□□□□ -1.71
PTPN9-204ENST00000564970 IGKV2D-28P01615 120 aa4.4□□□□□ -1.71
PTPN9-204ENST00000564970 IGLV1-47P01700 117 aa4.4□□□□□ -1.71
PTPN9-204ENST00000564970 IGHV1-8P0DP01 117 aa4.4□□□□□ -1.71
PTPN9-204ENST00000564970 SPINK2P20155 84 aa4.4□□□□□ -1.71
PTPN9-204ENST00000564970 CASC2Q6XLA1 102 aa4.4□□□□□ -1.71
PTPN9-204ENST00000564970 ZNF843Q8N446 348 aa4.4□□□□□ -1.71
PTPN9-204ENST00000564970 KRTAP9-9Q9BYP9 154 aa4.4□□□□□ -1.71
PTPN9-204ENST00000564970 KRTAP9-4Q9BYQ2 154 aa4.4□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms