RNA–Protein interactions for RNA: ENST00000561258.1

VPS13C-210, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 3

Gene VPS13C, Length 614 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-210ENST00000561258 EMX2Q04743 252 aa1.99□□□□□ -2.09
VPS13C-210ENST00000561258 C10orf55Q5SWW7 151 aa1.99□□□□□ -2.09
VPS13C-210ENST00000561258 Q6ZSA8 131 aa1.99□□□□□ -2.09
VPS13C-210ENST00000561258 SFT2D1Q8WV19 159 aa1.99□□□□□ -2.09
VPS13C-210ENST00000561258 HSPB11Q9Y547 144 aa1.99□□□□□ -2.09
VPS13C-210ENST00000561258 LOC105371267A0A1B0GV96 52 aa1.98□□□□□ -2.09
VPS13C-210ENST00000561258 FAM223BA6NKX1 122 aa1.98□□□□□ -2.09
VPS13C-210ENST00000561258 GABARAPH6UMI1 98 aa1.98□□□□□ -2.09
VPS13C-210ENST00000561258 HIST1H2BKO60814 126 aa1.98□□□□□ -2.09
VPS13C-210ENST00000561258 FAM107AO95990 144 aa1.98□□□□□ -2.09
VPS13C-210ENST00000561258 CYB5AP00167 134 aa1.98□□□□□ -2.09
VPS13C-210ENST00000561258 HIST1H2BJP06899 126 aa1.98□□□□□ -2.09
VPS13C-210ENST00000561258 RNASE3P12724 160 aaKnown RBP1.98□□□□□ -2.09
VPS13C-210ENST00000561258 DNAJB13P59910 316 aa1.98□□□□□ -2.09
VPS13C-210ENST00000561258 CDK6Q00534 326 aa1.98□□□□□ -2.09
VPS13C-210ENST00000561258 FXYD3Q14802 87 aa1.98□□□□□ -2.09
VPS13C-210ENST00000561258 FAM223AQ8IWN6 122 aa1.98□□□□□ -2.09
VPS13C-210ENST00000561258 OR2T35Q8NGX2 323 aa1.98□□□□□ -2.09
VPS13C-210ENST00000561258 OR4K15Q8NH41 348 aa1.98□□□□□ -2.09
VPS13C-210ENST00000561258 RETNLBQ9BQ08 111 aa1.98□□□□□ -2.09
VPS13C-210ENST00000561258 METTL1Q9UBP6 276 aaKnown RBP1.98□□□□□ -2.09
VPS13C-210ENST00000561258 IER3IP1Q9Y5U9 82 aa1.98□□□□□ -2.09
VPS13C-210ENST00000561258 LY96Q9Y6Y9 160 aa1.98□□□□□ -2.09
VPS13C-210ENST00000561258 IGKV3-7A0A075B6H7 116 aa1.97□□□□□ -2.09
VPS13C-210ENST00000561258 OR2H2O95918 312 aa1.97□□□□□ -2.09
VPS13C-210ENST00000561258 DHFRP00374 187 aa1.97□□□□□ -2.09
VPS13C-210ENST00000561258 HRCT1Q6UXD1 115 aa1.97□□□□□ -2.09
VPS13C-210ENST00000561258 LINC01600Q96MT4 127 aa1.97□□□□□ -2.09
VPS13C-210ENST00000561258 PRH1P02810 166 aa1.96□□□□□ -2.1
VPS13C-210ENST00000561258 OR10J4P0C629 311 aa1.96□□□□□ -2.1
VPS13C-210ENST00000561258 APELAP0DMC3 54 aa1.96□□□□□ -2.1
VPS13C-210ENST00000561258 RPL35P42766 123 aaKnown RBP1.96□□□□□ -2.1
VPS13C-210ENST00000561258 DEFB131AP59861 70 aa1.96□□□□□ -2.1
VPS13C-210ENST00000561258 SLC25A26Q70HW3 274 aa1.96□□□□□ -2.1
VPS13C-210ENST00000561258 Q8N814 137 aa1.96□□□□□ -2.1
VPS13C-210ENST00000561258 ARL11Q969Q4 196 aa1.96□□□□□ -2.1
VPS13C-210ENST00000561258 CHCHD1Q96BP2 118 aaKnown RBP1.96□□□□□ -2.1
VPS13C-210ENST00000561258 DNAH8Q96JB1 4490 aa1.96□□□□□ -2.1
VPS13C-210ENST00000561258 SSPOA2VEC9 5147 aa1.95□□□□□ -2.1
VPS13C-210ENST00000561258 DEGS1O15121 323 aa1.95□□□□□ -2.1
VPS13C-210ENST00000561258 IGLV3-1P01715 115 aa1.95□□□□□ -2.1
VPS13C-210ENST00000561258 ZNF137PP52743 207 aa1.95□□□□□ -2.1
VPS13C-210ENST00000561258 RAB4BP61018 213 aa1.95□□□□□ -2.1
VPS13C-210ENST00000561258 SPCS2Q15005 226 aa1.95□□□□□ -2.1
VPS13C-210ENST00000561258 CCDC153Q494R4 210 aa1.95□□□□□ -2.1
VPS13C-210ENST00000561258 C1orf137Q5JT78 98 aa1.95□□□□□ -2.1
VPS13C-210ENST00000561258 OR4B1Q8NGF8 309 aa1.95□□□□□ -2.1
VPS13C-210ENST00000561258 AMELYQ99218 206 aa1.95□□□□□ -2.1
VPS13C-210ENST00000561258 BATF3Q9NR55 127 aa1.95□□□□□ -2.1
VPS13C-210ENST00000561258 TRAPPC2LQ9UL33 140 aa1.95□□□□□ -2.1
VPS13C-210ENST00000561258 IGKV2D-26A0A0A0MRZ7 120 aa1.94□□□□□ -2.1
VPS13C-210ENST00000561258 C17orf112F2Z3M2 114 aa1.94□□□□□ -2.1
VPS13C-210ENST00000561258 CDC42EP2O14613 210 aa1.94□□□□□ -2.1
VPS13C-210ENST00000561258 DEFB130BP0DP73 79 aa1.94□□□□□ -2.1
VPS13C-210ENST00000561258 DEFB130AP0DP74 79 aa1.94□□□□□ -2.1
VPS13C-210ENST00000561258 RPS28P62857 69 aaKnown RBP1.94□□□□□ -2.1
VPS13C-210ENST00000561258 NAA38Q9BRA0 125 aaKnown RBP1.94□□□□□ -2.1
VPS13C-210ENST00000561258 A0A087WX48 190 aa1.93□□□□□ -2.1
VPS13C-210ENST00000561258 IGHV1-58A0A0C4DH39 117 aa1.93□□□□□ -2.1
VPS13C-210ENST00000561258 A6NIN4 97 aa1.93□□□□□ -2.1
VPS13C-210ENST00000561258 E7EUB6 86 aa1.93□□□□□ -2.1
VPS13C-210ENST00000561258 SULT1C4O75897 302 aa1.93□□□□□ -2.1
VPS13C-210ENST00000561258 SCGB1A1P11684 91 aa1.93□□□□□ -2.1
VPS13C-210ENST00000561258 RAB5CP51148 216 aa1.93□□□□□ -2.1
VPS13C-210ENST00000561258 KRTAP20-1Q3LI63 56 aa1.93□□□□□ -2.1
VPS13C-210ENST00000561258 TMEM254Q8TBM7 123 aa1.93□□□□□ -2.1
VPS13C-210ENST00000561258 TAF9BQ9HBM6 251 aa1.93□□□□□ -2.1
VPS13C-210ENST00000561258 RABAC1Q9UI14 185 aa1.93□□□□□ -2.1
VPS13C-210ENST00000561258 TRBV7-1A0A0A6YYK4 115 aa1.92□□□□□ -2.1
VPS13C-210ENST00000561258 A0A0J9YY99 117 aa1.92□□□□□ -2.1
VPS13C-210ENST00000561258 OR2T8A6NH00 312 aa1.92□□□□□ -2.1
VPS13C-210ENST00000561258 FABP2P12104 132 aa1.92□□□□□ -2.1
VPS13C-210ENST00000561258 EVI2AP22794 236 aa1.92□□□□□ -2.1
VPS13C-210ENST00000561258 SDC2P34741 201 aa1.92□□□□□ -2.1
VPS13C-210ENST00000561258 RBP2P50120 134 aa1.92□□□□□ -2.1
VPS13C-210ENST00000561258 CNBPP62633 177 aaKnown RBP1.92□□□□□ -2.1
VPS13C-210ENST00000561258 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP1.92□□□□□ -2.1
VPS13C-210ENST00000561258 OR5D14Q8NGL3 314 aa1.92□□□□□ -2.1
VPS13C-210ENST00000561258 RHPN1-AS1Q9BWJ2 59 aa1.92□□□□□ -2.1
VPS13C-210ENST00000561258 CYSTM1Q9H1C7 97 aa1.92□□□□□ -2.1
VPS13C-210ENST00000561258 MED9Q9NWA0 146 aa1.92□□□□□ -2.1
VPS13C-210ENST00000561258 FCGBPQ9Y6R7 5405 aaPredicted RBP1.91□□□□□ -2.1
VPS13C-210ENST00000561258 A0A087WSZ3 146 aa1.91□□□□□ -2.1
VPS13C-210ENST00000561258 TMEM30CPA0ZSE6 113 aa1.91□□□□□ -2.1
VPS13C-210ENST00000561258 K7EP13 123 aa1.91□□□□□ -2.1
VPS13C-210ENST00000561258 SAA2P0DJI9 122 aaPredicted RBP1.91□□□□□ -2.1
VPS13C-210ENST00000561258 POLR2JP52435 117 aaKnown RBP1.91□□□□□ -2.1
VPS13C-210ENST00000561258 TDRG1Q3Y452 100 aa1.91□□□□□ -2.1
VPS13C-210ENST00000561258 ZNF833PQ6ZTB9 187 aa1.91□□□□□ -2.1
VPS13C-210ENST00000561258 TMEM229BQ8NBD8 167 aa1.91□□□□□ -2.1
VPS13C-210ENST00000561258 HYLS1Q96M11 299 aa1.91□□□□□ -2.1
VPS13C-210ENST00000561258 SPANXA1Q9NS26 97 aa1.91□□□□□ -2.1
VPS13C-210ENST00000561258 SYNE2Q8WXH0 6885 aaKnown RBP1.9□□□□□ -2.1
VPS13C-210ENST00000561258 TRBV6-8A0A0A6YYG3 113 aa1.9□□□□□ -2.11
VPS13C-210ENST00000561258 TRBV7-6A0A0J9YX20 115 aa1.9□□□□□ -2.11
VPS13C-210ENST00000561258 J3KT08 172 aa1.9□□□□□ -2.11
VPS13C-210ENST00000561258 NDUFA4O00483 81 aa1.9□□□□□ -2.11
VPS13C-210ENST00000561258 HYPMO75409 117 aa1.9□□□□□ -2.11
VPS13C-210ENST00000561258 GYPBP06028 91 aa1.9□□□□□ -2.11
VPS13C-210ENST00000561258 HIST1H1BP16401 226 aaKnown RBP1.9□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 115.5 ms