RNA–Protein interactions for RNA: ENST00000555934.1

LINC00643-204, long intergenic non-protein coding RNA 643, humanhuman

TSL 2

Gene LINC00643, Length 1,184 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-204ENST00000555934 PATE1Q8WXA2 126 aa1.91□□□□□ -2.1
LINC00643-204ENST00000555934 BPESC1Q9GZL8 116 aa1.91□□□□□ -2.1
LINC00643-204ENST00000555934 FREM1Q5H8C1 2179 aa1.91□□□□□ -2.1
LINC00643-204ENST00000555934 PLXNA1Q9UIW2 1896 aa1.9□□□□□ -2.1
LINC00643-204ENST00000555934 COL4A5P29400 1685 aa1.9□□□□□ -2.1
LINC00643-204ENST00000555934 ZNF831Q5JPB2 1677 aa1.9□□□□□ -2.1
LINC00643-204ENST00000555934 RTTNQ86VV8 2226 aa1.9□□□□□ -2.1
LINC00643-204ENST00000555934 TRBV6-8A0A0A6YYG3 113 aa1.9□□□□□ -2.11
LINC00643-204ENST00000555934 CHKB-CPT1BH3BT56 60 aa1.9□□□□□ -2.11
LINC00643-204ENST00000555934 ACYP1P07311 99 aa1.9□□□□□ -2.11
LINC00643-204ENST00000555934 COX6CP09669 75 aa1.9□□□□□ -2.11
LINC00643-204ENST00000555934 CFAP126Q5VTH2 177 aa1.9□□□□□ -2.11
LINC00643-204ENST00000555934 FAM223AQ8IWN6 122 aa1.9□□□□□ -2.11
LINC00643-204ENST00000555934 LIMD2Q9BT23 127 aa1.9□□□□□ -2.11
LINC00643-204ENST00000555934 NHSL1Q5SYE7 1610 aa1.9□□□□□ -2.11
LINC00643-204ENST00000555934 RGPD8O14715 1765 aaPredicted RBP1.9□□□□□ -2.11
LINC00643-204ENST00000555934 ANKRD36CQ5JPF3 1778 aa1.9□□□□□ -2.11
LINC00643-204ENST00000555934 BCORQ6W2J9 1755 aa1.9□□□□□ -2.11
LINC00643-204ENST00000555934 DLEC1Q9Y238 1755 aa1.9□□□□□ -2.11
LINC00643-204ENST00000555934 AFDNP55196 1824 aaKnown RBP1.89□□□□□ -2.11
LINC00643-204ENST00000555934 MYO18AQ92614 2054 aaKnown RBP1.89□□□□□ -2.11
LINC00643-204ENST00000555934 HEATR5BQ9P2D3 2071 aa1.89□□□□□ -2.11
LINC00643-204ENST00000555934 TOGARAM1Q9Y4F4 1720 aa1.89□□□□□ -2.11
LINC00643-204ENST00000555934 IGKV3-7A0A075B6H7 116 aa1.89□□□□□ -2.11
LINC00643-204ENST00000555934 A0A0J9YY99 117 aa1.89□□□□□ -2.11
LINC00643-204ENST00000555934 TMEM170BQ5T4T1 132 aa1.89□□□□□ -2.11
LINC00643-204ENST00000555934 SFTA2Q6UW10 78 aa1.89□□□□□ -2.11
LINC00643-204ENST00000555934 LINC00643Q86TS7 51 aa1.89□□□□□ -2.11
LINC00643-204ENST00000555934 SCN7AQ01118 1682 aa1.89□□□□□ -2.11
LINC00643-204ENST00000555934 COL4A6Q14031 1691 aa1.89□□□□□ -2.11
LINC00643-204ENST00000555934 FBN3Q75N90 2809 aa1.89□□□□□ -2.11
LINC00643-204ENST00000555934 HMCN1Q96RW7 5635 aa1.89□□□□□ -2.11
LINC00643-204ENST00000555934 RGPD5Q99666 1765 aa1.88□□□□□ -2.11
LINC00643-204ENST00000555934 TRBV25-1A0A075B6N4 114 aa1.88□□□□□ -2.11
LINC00643-204ENST00000555934 TMEM14DPA8MWL7 114 aa1.88□□□□□ -2.11
LINC00643-204ENST00000555934 GNGT1P63211 74 aa1.88□□□□□ -2.11
LINC00643-204ENST00000555934 ZNF56Q15929 161 aa1.88□□□□□ -2.11
LINC00643-204ENST00000555934 DYNLRB1Q9NP97 96 aa1.88□□□□□ -2.11
LINC00643-204ENST00000555934 BAZ2BQ9UIF8 2168 aaKnown RBP1.88□□□□□ -2.11
LINC00643-204ENST00000555934 RGPD2P0DJD1 1756 aa1.87□□□□□ -2.11
LINC00643-204ENST00000555934 MYOFQ9NZM1 2061 aa1.87□□□□□ -2.11
LINC00643-204ENST00000555934 TRBV6-7A0A0A0MS04 114 aa1.87□□□□□ -2.11
LINC00643-204ENST00000555934 TRBV6-5A0A0K0K1A5 114 aa1.87□□□□□ -2.11
LINC00643-204ENST00000555934 TRBV6-4A0A1B0GX49 114 aa1.87□□□□□ -2.11
LINC00643-204ENST00000555934 CLPSL1A2RUU4 121 aa1.87□□□□□ -2.11
LINC00643-204ENST00000555934 PPYP01298 95 aa1.87□□□□□ -2.11
LINC00643-204ENST00000555934 IGHV3-30P01768 117 aa1.87□□□□□ -2.11
LINC00643-204ENST00000555934 SMIM13P0DJ93 91 aa1.87□□□□□ -2.11
LINC00643-204ENST00000555934 IGHV3-30-5P0DP03 117 aa1.87□□□□□ -2.11
LINC00643-204ENST00000555934 ELOF1P60002 83 aaKnown RBP1.87□□□□□ -2.11
LINC00643-204ENST00000555934 DDX60LQ5H9U9 1706 aaKnown RBP1.87□□□□□ -2.11
LINC00643-204ENST00000555934 MICAL3Q7RTP6 2002 aa1.87□□□□□ -2.11
LINC00643-204ENST00000555934 DEFB119Q8N690 84 aa1.87□□□□□ -2.11
LINC00643-204ENST00000555934 CDC42SE2Q9NRR3 84 aa1.87□□□□□ -2.11
LINC00643-204ENST00000555934 NDUFA4L2Q9NRX3 87 aa1.87□□□□□ -2.11
LINC00643-204ENST00000555934 NINQ8N4C6 2090 aa1.87□□□□□ -2.11
LINC00643-204ENST00000555934 NHSQ6T4R5 1651 aa1.86□□□□□ -2.11
LINC00643-204ENST00000555934 A0A087WWC5 75 aa1.86□□□□□ -2.11
LINC00643-204ENST00000555934 C7orf77A4D0Y5 90 aa1.86□□□□□ -2.11
LINC00643-204ENST00000555934 HIGD1CA8MV81 97 aa1.86□□□□□ -2.11
LINC00643-204ENST00000555934 UMAD1C9J7I0 102 aa1.86□□□□□ -2.11
LINC00643-204ENST00000555934 HMGN4O00479 90 aa1.86□□□□□ -2.11
LINC00643-204ENST00000555934 SSBP1Q04837 148 aaKnown RBP1.86□□□□□ -2.11
LINC00643-204ENST00000555934 C20orf197Q8N268 126 aa1.86□□□□□ -2.11
LINC00643-204ENST00000555934 LENEPQ9Y5L5 61 aa1.86□□□□□ -2.11
LINC00643-204ENST00000555934 EXPH5Q8NEV8 1989 aa1.86□□□□□ -2.11
LINC00643-204ENST00000555934 A0A1B0GUL6 1792 aa1.85□□□□□ -2.11
LINC00643-204ENST00000555934 LOC285095A0A1B0GVY8 99 aa1.85□□□□□ -2.11
LINC00643-204ENST00000555934 ZNF815PA8K554 130 aa1.85□□□□□ -2.11
LINC00643-204ENST00000555934 F8WEM9 126 aa1.85□□□□□ -2.11
LINC00643-204ENST00000555934 JMJD7-PLA2G4BH0Y9G9 81 aa1.85□□□□□ -2.11
LINC00643-204ENST00000555934 IGLV3-1P01715 115 aa1.85□□□□□ -2.11
LINC00643-204ENST00000555934 HMGN2P05204 90 aaKnown RBP1.85□□□□□ -2.11
LINC00643-204ENST00000555934 PDE6GP18545 87 aa1.85□□□□□ -2.11
LINC00643-204ENST00000555934 KRTAP21-3Q3LHN1 58 aa1.85□□□□□ -2.11
LINC00643-204ENST00000555934 PSMG4Q5JS54 123 aa1.85□□□□□ -2.11
LINC00643-204ENST00000555934 TMEM14BQ9NUH8 114 aa1.85□□□□□ -2.11
LINC00643-204ENST00000555934 NRXN2Q9P2S2 1712 aa1.85□□□□□ -2.11
LINC00643-204ENST00000555934 COL14A1Q05707 1796 aaKnown RBP1.85□□□□□ -2.11
LINC00643-204ENST00000555934 MED12LQ86YW9 2145 aa1.84□□□□□ -2.11
LINC00643-204ENST00000555934 QSER1Q2KHR3 1735 aa1.84□□□□□ -2.11
LINC00643-204ENST00000555934 LOC101927531A0A1B0GV80 90 aa1.84□□□□□ -2.11
LINC00643-204ENST00000555934 PPP1R17O96001 155 aa1.84□□□□□ -2.11
LINC00643-204ENST00000555934 C10orf55Q5SWW7 151 aa1.84□□□□□ -2.11
LINC00643-204ENST00000555934 XAF1Q6GPH4 301 aa1.84□□□□□ -2.11
LINC00643-204ENST00000555934 CRCT1Q9UGL9 99 aa1.84□□□□□ -2.11
LINC00643-204ENST00000555934 V9GYH0 126 aa1.84□□□□□ -2.11
LINC00643-204ENST00000555934 ZGRF1Q86YA3 2104 aa1.84□□□□□ -2.12
LINC00643-204ENST00000555934 HEATR1Q9H583 2144 aaKnown RBP1.84□□□□□ -2.12
LINC00643-204ENST00000555934 RP1L1Q8IWN7 2480 aaPredicted RBP1.83□□□□□ -2.12
LINC00643-204ENST00000555934 LRRC37AA6NMS7 1700 aa1.83□□□□□ -2.12
LINC00643-204ENST00000555934 IQCF6A8MYZ5 107 aa1.83□□□□□ -2.12
LINC00643-204ENST00000555934 C10orf142B7Z368 130 aa1.83□□□□□ -2.12
LINC00643-204ENST00000555934 SAA2P0DJI9 122 aaPredicted RBP1.83□□□□□ -2.12
LINC00643-204ENST00000555934 RNASE3P12724 160 aaKnown RBP1.83□□□□□ -2.12
LINC00643-204ENST00000555934 CCL3L1P16619 93 aa1.83□□□□□ -2.12
LINC00643-204ENST00000555934 SPAG11BQ08648 103 aa1.83□□□□□ -2.12
LINC00643-204ENST00000555934 SPAG11AQ6PDA7 123 aa1.83□□□□□ -2.12
LINC00643-204ENST00000555934 KLK9Q9UKQ9 250 aa1.83□□□□□ -2.12
LINC00643-204ENST00000555934 RP1P56715 2156 aa1.83□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms