RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 FAM240AA0A1B0GVK7 77 aa9.53□□□□□ -0.88
SHMT2-222ENST00000555774 PF4P02776 101 aa9.53□□□□□ -0.88
SHMT2-222ENST00000555774 MRPL23Q16540 153 aaKnown RBP9.53□□□□□ -0.88
SHMT2-222ENST00000555774 FAM222AQ5U5X8 452 aa9.53□□□□□ -0.88
SHMT2-222ENST00000555774 WFDC10AQ9H1F0 79 aa9.53□□□□□ -0.88
SHMT2-222ENST00000555774 FHL2Q14192 279 aa9.52□□□□□ -0.89
SHMT2-222ENST00000555774 TRBV6-8A0A0A6YYG3 113 aa9.51□□□□□ -0.89
SHMT2-222ENST00000555774 SNCGO76070 127 aa9.51□□□□□ -0.89
SHMT2-222ENST00000555774 COX7B2Q8TF08 81 aa9.51□□□□□ -0.89
SHMT2-222ENST00000555774 TEX15Q9BXT5 2789 aa9.51□□□□□ -0.89
SHMT2-222ENST00000555774 LOC100131303A0A0U1RQF7 123 aa9.51□□□□□ -0.89
SHMT2-222ENST00000555774 MYO9AB2RTY4 2548 aa9.51□□□□□ -0.89
SHMT2-222ENST00000555774 A0A0U1RRA0 63 aa9.5□□□□□ -0.89
SHMT2-222ENST00000555774 TRACP01848 142 aa9.5□□□□□ -0.89
SHMT2-222ENST00000555774 HILS1P60008 231 aa9.5□□□□□ -0.89
SHMT2-222ENST00000555774 Q6Q795 121 aa9.5□□□□□ -0.89
SHMT2-222ENST00000555774 TRAV13-2A0A0B4J235 113 aa9.5□□□□□ -0.89
SHMT2-222ENST00000555774 GAGE6Q13070 117 aa9.5□□□□□ -0.89
SHMT2-222ENST00000555774 KIR2DL5BQ8NHK3 375 aa9.49□□□□□ -0.89
SHMT2-222ENST00000555774 ABCA12Q86UK0 2595 aa9.49□□□□□ -0.89
SHMT2-222ENST00000555774 GAGE2BQ13066 116 aa9.48□□□□□ -0.89
SHMT2-222ENST00000555774 GAGE2EQ4V326 116 aa9.48□□□□□ -0.89
SHMT2-222ENST00000555774 LINC00612Q8N6U2 182 aa9.48□□□□□ -0.89
SHMT2-222ENST00000555774 GAGE2DQ9UEU5 116 aa9.48□□□□□ -0.89
SHMT2-222ENST00000555774 ZFYVE26Q68DK2 2539 aa9.48□□□□□ -0.89
SHMT2-222ENST00000555774 CHCHD5Q9BSY4 110 aa9.48□□□□□ -0.89
SHMT2-222ENST00000555774 IGHV3OR16-9A0A0B4J2B5 98 aa9.47□□□□□ -0.89
SHMT2-222ENST00000555774 CENPEQ02224 2701 aa9.47□□□□□ -0.89
SHMT2-222ENST00000555774 A0A087WZ39 114 aa9.47□□□□□ -0.89
SHMT2-222ENST00000555774 HIST2H2BCQ6DN03 193 aa9.47□□□□□ -0.89
SHMT2-222ENST00000555774 IGLV4-60A0A075B6I1 120 aa9.46□□□□□ -0.9
SHMT2-222ENST00000555774 CRPP02741 224 aa9.46□□□□□ -0.9
SHMT2-222ENST00000555774 ACYP1P07311 99 aa9.46□□□□□ -0.9
SHMT2-222ENST00000555774 RPL28P46779 137 aaKnown RBP9.46□□□□□ -0.9
SHMT2-222ENST00000555774 IBA57-AS1B1ANH7 110 aa9.45□□□□□ -0.9
SHMT2-222ENST00000555774 MIR7-3HGQ8N6C7 128 aa9.45□□□□□ -0.9
SHMT2-222ENST00000555774 C15orf53Q8NAA6 179 aa9.45□□□□□ -0.9
SHMT2-222ENST00000555774 ITPR3Q14573 2671 aa9.45□□□□□ -0.9
SHMT2-222ENST00000555774 APCP25054 2843 aa9.44□□□□□ -0.9
SHMT2-222ENST00000555774 ANAPC13Q9BS18 74 aa9.44□□□□□ -0.9
SHMT2-222ENST00000555774 SMIM9A6NGZ8 99 aa9.44□□□□□ -0.9
SHMT2-222ENST00000555774 CRLF1O75462 422 aa9.44□□□□□ -0.9
SHMT2-222ENST00000555774 SND1-IT1Q9HBX3 110 aa9.44□□□□□ -0.9
SHMT2-222ENST00000555774 TOMM7Q9P0U1 55 aa9.44□□□□□ -0.9
SHMT2-222ENST00000555774 PLA2G2AP14555 144 aa9.43□□□□□ -0.9
SHMT2-222ENST00000555774 LINC01561Q8N1V8 128 aa9.43□□□□□ -0.9
SHMT2-222ENST00000555774 ANK3Q12955 4377 aaKnown RBP9.42□□□□□ -0.9
SHMT2-222ENST00000555774 CHD6Q8TD26 2715 aa9.42□□□□□ -0.9
SHMT2-222ENST00000555774 ZNF469Q96JG9 3925 aaPredicted RBP9.42□□□□□ -0.9
SHMT2-222ENST00000555774 IGKV3OR2-268A0A0C4DH90 116 aa9.42□□□□□ -0.9
SHMT2-222ENST00000555774 LINC00959A0A1B0GUT2 108 aa9.42□□□□□ -0.9
SHMT2-222ENST00000555774 A0A1B0GUV1 79 aa9.42□□□□□ -0.9
SHMT2-222ENST00000555774 LINC00158P58513 81 aa9.42□□□□□ -0.9
SHMT2-222ENST00000555774 LINC00482Q8N8I6 264 aa9.42□□□□□ -0.9
SHMT2-222ENST00000555774 TRAV26-1A0A087WT03 109 aa9.42□□□□□ -0.9
SHMT2-222ENST00000555774 EPG5Q9HCE0 2579 aa9.41□□□□□ -0.9
SHMT2-222ENST00000555774 IGKV2-28A0A075B6P5 120 aa9.41□□□□□ -0.9
SHMT2-222ENST00000555774 IGKV2D-28P01615 120 aa9.41□□□□□ -0.9
SHMT2-222ENST00000555774 DEFB130BP0DP73 79 aa9.41□□□□□ -0.9
SHMT2-222ENST00000555774 DEFB130AP0DP74 79 aa9.41□□□□□ -0.9
SHMT2-222ENST00000555774 BAALC-AS2P0C853 105 aa9.4□□□□□ -0.9
SHMT2-222ENST00000555774 GYPEP15421 78 aa9.4□□□□□ -0.9
SHMT2-222ENST00000555774 TTC32Q5I0X7 151 aa9.4□□□□□ -0.9
SHMT2-222ENST00000555774 LINC00337Q8N6G1 96 aa9.4□□□□□ -0.9
SHMT2-222ENST00000555774 NDUFV3P56181 108 aaKnown RBP9.4□□□□□ -0.9
SHMT2-222ENST00000555774 SS18Q15532 418 aa9.4□□□□□ -0.9
SHMT2-222ENST00000555774 PRO0255Q9UI72 69 aa9.4□□□□□ -0.9
SHMT2-222ENST00000555774 H0YGX0 51 aa9.39□□□□□ -0.91
SHMT2-222ENST00000555774 CCL18P55774 89 aa9.39□□□□□ -0.91
SHMT2-222ENST00000555774 FAM218AQ96MZ4 157 aa9.39□□□□□ -0.91
SHMT2-222ENST00000555774 X6R8D5 127 aa9.39□□□□□ -0.91
SHMT2-222ENST00000555774 TRBV7-7A0A0K0K1E9 115 aa9.39□□□□□ -0.91
SHMT2-222ENST00000555774 C5orf38Q86SI9 138 aa9.39□□□□□ -0.91
SHMT2-222ENST00000555774 LYRM9A8MSI8 78 aa9.38□□□□□ -0.91
SHMT2-222ENST00000555774 INAFM2P0DMQ5 153 aa9.38□□□□□ -0.91
SHMT2-222ENST00000555774 KRTAP10-3P60369 221 aa9.38□□□□□ -0.91
SHMT2-222ENST00000555774 Q8IZM0 81 aa9.38□□□□□ -0.91
SHMT2-222ENST00000555774 SONP18583 2426 aaKnown RBP9.37□□□□□ -0.91
SHMT2-222ENST00000555774 TLN2Q9Y4G6 2542 aa9.37□□□□□ -0.91
SHMT2-222ENST00000555774 WNK1Q9H4A3 2382 aa9.37□□□□□ -0.91
SHMT2-222ENST00000555774 J3QKU1 62 aa9.37□□□□□ -0.91
SHMT2-222ENST00000555774 NHLRC4P0CG21 123 aaPredicted RBP9.37□□□□□ -0.91
SHMT2-222ENST00000555774 C6orf226Q5I0X4 101 aa9.37□□□□□ -0.91
SHMT2-222ENST00000555774 SMIM11BQ8TCY0 68 aa9.37□□□□□ -0.91
SHMT2-222ENST00000555774 MALP21145 153 aa9.36□□□□□ -0.91
SHMT2-222ENST00000555774 IMUPQ9GZP8 106 aa9.36□□□□□ -0.91
SHMT2-222ENST00000555774 C22orf24Q9Y442 160 aa9.36□□□□□ -0.91
SHMT2-222ENST00000555774 FLNAP21333 2647 aaKnown RBP9.36□□□□□ -0.91
SHMT2-222ENST00000555774 C9orf66Q5T8R8 295 aa9.36□□□□□ -0.91
SHMT2-222ENST00000555774 DNAL4O96015 105 aa9.35□□□□□ -0.91
SHMT2-222ENST00000555774 LY6G6DO95868 133 aa9.34□□□□□ -0.91
SHMT2-222ENST00000555774 PFN2P35080 140 aa9.34□□□□□ -0.91
SHMT2-222ENST00000555774 PAX4O43316 350 aa9.34□□□□□ -0.91
SHMT2-222ENST00000555774 XCL1P47992 114 aa9.34□□□□□ -0.91
SHMT2-222ENST00000555774 SDIM1Q6ZPB5 146 aa9.34□□□□□ -0.91
SHMT2-222ENST00000555774 LINC00643Q86TS7 51 aa9.34□□□□□ -0.91
SHMT2-222ENST00000555774 CXCL5P42830 114 aa9.33□□□□□ -0.92
SHMT2-222ENST00000555774 SETXQ7Z333 2677 aaKnown RBP9.33□□□□□ -0.92
SHMT2-222ENST00000555774 Q9HAA7 133 aa9.32□□□□□ -0.92
SHMT2-222ENST00000555774 A0A087WYN8 130 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 140 ms