RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 TRAV8-4A0A0B4J246 113 aa10.69□□□□□ -0.7
USP28-214ENST00000545540 TEX29Q8N6K0 151 aa10.69□□□□□ -0.7
USP28-214ENST00000545540 UBE2L6O14933 153 aa10.69□□□□□ -0.7
USP28-214ENST00000545540 GIG44P09565 113 aaPredicted RBP10.69□□□□□ -0.7
USP28-214ENST00000545540 CLPSL2Q6UWE3 100 aa10.69□□□□□ -0.7
USP28-214ENST00000545540 ANAPC13Q9BS18 74 aa10.69□□□□□ -0.7
USP28-214ENST00000545540 SNCGO76070 127 aa10.68□□□□□ -0.7
USP28-214ENST00000545540 CIRBPQ14011 172 aaKnown RBP10.68□□□□□ -0.7
USP28-214ENST00000545540 C15orf53Q8NAA6 179 aa10.68□□□□□ -0.7
USP28-214ENST00000545540 NDUFA1O15239 70 aa10.68□□□□□ -0.7
USP28-214ENST00000545540 OTOGQ6ZRI0 2925 aa10.68□□□□□ -0.7
USP28-214ENST00000545540 TRRAPQ9Y4A5 3859 aa10.67□□□□□ -0.7
USP28-214ENST00000545540 Q9HAA7 133 aa10.67□□□□□ -0.7
USP28-214ENST00000545540 EDA2RQ9HAV5 297 aa10.67□□□□□ -0.7
USP28-214ENST00000545540 IGLV4-60A0A075B6I1 120 aa10.67□□□□□ -0.7
USP28-214ENST00000545540 CDC42SE2Q9NRR3 84 aa10.67□□□□□ -0.7
USP28-214ENST00000545540 TRGV4A0A0C4DH28 118 aa10.67□□□□□ -0.7
USP28-214ENST00000545540 C5orf38Q86SI9 138 aa10.67□□□□□ -0.7
USP28-214ENST00000545540 DNAJC30Q96LL9 226 aa10.67□□□□□ -0.7
USP28-214ENST00000545540 SMR3AQ99954 134 aa10.67□□□□□ -0.7
USP28-214ENST00000545540 HERVK_113P63121 156 aa10.66□□□□□ -0.7
USP28-214ENST00000545540 PFN2P35080 140 aa10.66□□□□□ -0.7
USP28-214ENST00000545540 GAGE2BQ13066 116 aa10.65□□□□□ -0.7
USP28-214ENST00000545540 GAGE2EQ4V326 116 aa10.65□□□□□ -0.7
USP28-214ENST00000545540 YAE1D1Q9NRH1 226 aa10.65□□□□□ -0.7
USP28-214ENST00000545540 GAGE2DQ9UEU5 116 aa10.65□□□□□ -0.7
USP28-214ENST00000545540 TIRAPP58753 221 aa10.65□□□□□ -0.7
USP28-214ENST00000545540 LST1O00453 97 aa10.65□□□□□ -0.71
USP28-214ENST00000545540 DEFB4AO15263 64 aa10.65□□□□□ -0.71
USP28-214ENST00000545540 C3orf56Q8N813 242 aa10.65□□□□□ -0.71
USP28-214ENST00000545540 LINC01006Q8NI28 216 aa10.65□□□□□ -0.71
USP28-214ENST00000545540 CHCHD5Q9BSY4 110 aa10.65□□□□□ -0.71
USP28-214ENST00000545540 TMEM262E9PQX1 116 aa10.64□□□□□ -0.71
USP28-214ENST00000545540 FAM218AQ96MZ4 157 aa10.64□□□□□ -0.71
USP28-214ENST00000545540 TEP1Q99973 2627 aaKnown RBP10.64□□□□□ -0.71
USP28-214ENST00000545540 IGLV5-39A0A0G2JS06 123 aa10.63□□□□□ -0.71
USP28-214ENST00000545540 TMEM243Q9BU79 118 aa10.63□□□□□ -0.71
USP28-214ENST00000545540 IGLV5-45A0A087WSX0 123 aa10.62□□□□□ -0.71
USP28-214ENST00000545540 B5MCH6 92 aa10.62□□□□□ -0.71
USP28-214ENST00000545540 F5H768 121 aa10.62□□□□□ -0.71
USP28-214ENST00000545540 MIR7-3HGQ8N6C7 128 aa10.62□□□□□ -0.71
USP28-214ENST00000545540 ANK3Q12955 4377 aaKnown RBP10.62□□□□□ -0.71
USP28-214ENST00000545540 PLAC8L1A1L4L8 177 aa10.62□□□□□ -0.71
USP28-214ENST00000545540 SS18L2Q9UHA2 77 aa10.62□□□□□ -0.71
USP28-214ENST00000545540 LINC00158P58513 81 aa10.62□□□□□ -0.71
USP28-214ENST00000545540 CITED1Q99966 193 aa10.61□□□□□ -0.71
USP28-214ENST00000545540 NHLRC4P0CG21 123 aaPredicted RBP10.61□□□□□ -0.71
USP28-214ENST00000545540 DAZ2Q13117 558 aaKnown RBP10.6□□□□□ -0.71
USP28-214ENST00000545540 DAZ4Q86SG3 579 aaKnown RBP10.6□□□□□ -0.71
USP28-214ENST00000545540 DAZ3Q9NR90 486 aaKnown RBP10.6□□□□□ -0.71
USP28-214ENST00000545540 ATP5G1P05496 136 aa10.6□□□□□ -0.71
USP28-214ENST00000545540 SPATA3Q8NHX4 192 aa10.59□□□□□ -0.71
USP28-214ENST00000545540 IFITM1P13164 125 aa10.59□□□□□ -0.71
USP28-214ENST00000545540 IL17DQ8TAD2 202 aa10.59□□□□□ -0.71
USP28-214ENST00000545540 CCDC179H3BU77 68 aa10.59□□□□□ -0.71
USP28-214ENST00000545540 XCL1P47992 114 aa10.58□□□□□ -0.72
USP28-214ENST00000545540 Q8N3U1 123 aa10.58□□□□□ -0.72
USP28-214ENST00000545540 LINC00337Q8N6G1 96 aa10.58□□□□□ -0.72
USP28-214ENST00000545540 PKD1L1Q8TDX9 2849 aa10.57□□□□□ -0.72
USP28-214ENST00000545540 NDUFV3P56181 108 aaKnown RBP10.57□□□□□ -0.72
USP28-214ENST00000545540 BAALC-AS2P0C853 105 aa10.56□□□□□ -0.72
USP28-214ENST00000545540 PRR3P79522 188 aaKnown RBP10.56□□□□□ -0.72
USP28-214ENST00000545540 LINC00482Q8N8I6 264 aa10.56□□□□□ -0.72
USP28-214ENST00000545540 OR13C6PQ8NH95 151 aa10.56□□□□□ -0.72
USP28-214ENST00000545540 TRBV10-1A0A0K0K1A3 114 aa10.56□□□□□ -0.72
USP28-214ENST00000545540 TIMM17BO60830 172 aa10.56□□□□□ -0.72
USP28-214ENST00000545540 COX7A2LO14548 114 aa10.56□□□□□ -0.72
USP28-214ENST00000545540 C9orf129Q5T035 196 aaKnown RBP10.56□□□□□ -0.72
USP28-214ENST00000545540 COX7B2Q8TF08 81 aa10.56□□□□□ -0.72
USP28-214ENST00000545540 IGLV10-54A0A075B6I4 117 aa10.55□□□□□ -0.72
USP28-214ENST00000545540 SLPIP03973 132 aa10.55□□□□□ -0.72
USP28-214ENST00000545540 SND1-IT1Q9HBX3 110 aa10.55□□□□□ -0.72
USP28-214ENST00000545540 C19orf73Q9NVV2 129 aa10.55□□□□□ -0.72
USP28-214ENST00000545540 HIVEP1P15822 2718 aa10.55□□□□□ -0.72
USP28-214ENST00000545540 H3BT86 120 aa10.55□□□□□ -0.72
USP28-214ENST00000545540 FHL2Q14192 279 aa10.55□□□□□ -0.72
USP28-214ENST00000545540 IGKV2-28A0A075B6P5 120 aa10.54□□□□□ -0.72
USP28-214ENST00000545540 IGKV2D-28P01615 120 aa10.54□□□□□ -0.72
USP28-214ENST00000545540 TRAV25A0A0B4J276 109 aa10.54□□□□□ -0.72
USP28-214ENST00000545540 A0A087WYN8 130 aa10.53□□□□□ -0.72
USP28-214ENST00000545540 TRBV6-8A0A0A6YYG3 113 aa10.53□□□□□ -0.72
USP28-214ENST00000545540 PAX4O43316 350 aa10.53□□□□□ -0.72
USP28-214ENST00000545540 CSNK1G2-AS1Q8NCQ2 148 aa10.53□□□□□ -0.72
USP28-214ENST00000545540 C16orf74Q96GX8 76 aa10.53□□□□□ -0.72
USP28-214ENST00000545540 SHISA2Q6UWI4 295 aa10.53□□□□□ -0.72
USP28-214ENST00000545540 SMCR5Q8TEV8 140 aa10.53□□□□□ -0.72
USP28-214ENST00000545540 GYPEP15421 78 aa10.52□□□□□ -0.72
USP28-214ENST00000545540 IGLV1-51P01701 117 aa10.52□□□□□ -0.73
USP28-214ENST00000545540 CRPP02741 224 aa10.52□□□□□ -0.73
USP28-214ENST00000545540 CCL18P55774 89 aa10.52□□□□□ -0.73
USP28-214ENST00000545540 CSDC2Q9Y534 153 aaKnown RBP10.52□□□□□ -0.73
USP28-214ENST00000545540 GAGE2AQ6NT46 116 aa10.51□□□□□ -0.73
USP28-214ENST00000545540 M0QXV9 152 aa10.51□□□□□ -0.73
USP28-214ENST00000545540 LRRC75A-AS1Q8N1F1 130 aa10.51□□□□□ -0.73
USP28-214ENST00000545540 SMIM11BQ8TCY0 68 aa10.51□□□□□ -0.73
USP28-214ENST00000545540 KRTAP1-1Q07627 177 aa10.51□□□□□ -0.73
USP28-214ENST00000545540 C6orf226Q5I0X4 101 aa10.51□□□□□ -0.73
USP28-214ENST00000545540 LINC00526Q96FQ7 95 aa10.51□□□□□ -0.73
USP28-214ENST00000545540 C22orf24Q9Y442 160 aa10.5□□□□□ -0.73
USP28-214ENST00000545540 IGHV3OR16-9A0A0B4J2B5 98 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms