RNA–Protein interactions for RNA: ENST00000542274.5

CDH3-203, Transcript of cadherin 3, humanhuman

TSL 2

Gene CDH3, Length 2,746 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-203ENST00000542274 SPATA3Q8NHX4 192 aa8.09□□□□□ -1.11
CDH3-203ENST00000542274 RMI2Q96E14 147 aa8.09□□□□□ -1.11
CDH3-203ENST00000542274 VSIG2Q96IQ7 327 aa8.09□□□□□ -1.11
CDH3-203ENST00000542274 SNURFQ9Y675 71 aa8.09□□□□□ -1.11
CDH3-203ENST00000542274 AKAP9Q99996 3911 aa8.09□□□□□ -1.11
CDH3-203ENST00000542274 IGLV2-18A0A075B6J9 118 aa8.09□□□□□ -1.12
CDH3-203ENST00000542274 TRAV12-3A0A0B4J271 114 aa8.09□□□□□ -1.12
CDH3-203ENST00000542274 ATP5EP56381 51 aaPredicted RBP8.09□□□□□ -1.12
CDH3-203ENST00000542274 TSPEAR-AS2P59090 65 aa8.09□□□□□ -1.12
CDH3-203ENST00000542274 DEFB112Q30KQ8 113 aa8.09□□□□□ -1.12
CDH3-203ENST00000542274 TRGV3P03979 118 aa8.08□□□□□ -1.12
CDH3-203ENST00000542274 DEFB1P60022 68 aa8.08□□□□□ -1.12
CDH3-203ENST00000542274 RNF185Q96GF1 192 aa8.08□□□□□ -1.12
CDH3-203ENST00000542274 TMEM256-PLSCR3K7ERE1 68 aa8.08□□□□□ -1.12
CDH3-203ENST00000542274 C10orf99Q6UWK7 81 aa8.08□□□□□ -1.12
CDH3-203ENST00000542274 MTORP42345 2549 aa8.07□□□□□ -1.12
CDH3-203ENST00000542274 IBA57-AS1B1ANH7 110 aa8.07□□□□□ -1.12
CDH3-203ENST00000542274 NXPH4O95158 308 aa8.07□□□□□ -1.12
CDH3-203ENST00000542274 IGHV4-59P01825 116 aa8.07□□□□□ -1.12
CDH3-203ENST00000542274 RPL28P46779 137 aaKnown RBP8.07□□□□□ -1.12
CDH3-203ENST00000542274 LYPD1Q8N2G4 141 aa8.07□□□□□ -1.12
CDH3-203ENST00000542274 TMEM190Q8WZ59 177 aa8.07□□□□□ -1.12
CDH3-203ENST00000542274 IGKV3-7A0A075B6H7 116 aa8.07□□□□□ -1.12
CDH3-203ENST00000542274 TRAV13-2A0A0B4J235 113 aa8.07□□□□□ -1.12
CDH3-203ENST00000542274 TRBV27A0A0K0K1C4 114 aa8.07□□□□□ -1.12
CDH3-203ENST00000542274 I3L3M4 83 aa8.07□□□□□ -1.12
CDH3-203ENST00000542274 PDE6HQ13956 83 aa8.07□□□□□ -1.12
CDH3-203ENST00000542274 C19orf54Q5BKX5 351 aa8.07□□□□□ -1.12
CDH3-203ENST00000542274 PAPPA-AS1Q5QFB9 102 aa8.07□□□□□ -1.12
CDH3-203ENST00000542274 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa8.07□□□□□ -1.12
CDH3-203ENST00000542274 ZNF73O43830 326 aaPredicted RBP8.06□□□□□ -1.12
CDH3-203ENST00000542274 A6NDX4 124 aa8.06□□□□□ -1.12
CDH3-203ENST00000542274 SCGB3A1Q96QR1 104 aa8.06□□□□□ -1.12
CDH3-203ENST00000542274 LINC00588Q9Y4M8 146 aa8.06□□□□□ -1.12
CDH3-203ENST00000542274 FLNBO75369 2602 aaKnown RBP8.05□□□□□ -1.12
CDH3-203ENST00000542274 ZNF575Q86XF7 245 aa8.05□□□□□ -1.12
CDH3-203ENST00000542274 AMELXQ99217 191 aa8.05□□□□□ -1.12
CDH3-203ENST00000542274 DNAL4O96015 105 aa8.04□□□□□ -1.12
CDH3-203ENST00000542274 FAM222AQ5U5X8 452 aa8.04□□□□□ -1.12
CDH3-203ENST00000542274 LINC00846Q9NV44 126 aa8.04□□□□□ -1.12
CDH3-203ENST00000542274 TRBV6-1A0A0K0K1D8 114 aa8.04□□□□□ -1.12
CDH3-203ENST00000542274 ESRGQ1W209 222 aa8.04□□□□□ -1.12
CDH3-203ENST00000542274 Q6ZSV7 163 aa8.04□□□□□ -1.12
CDH3-203ENST00000542274 NF1P21359 2839 aa8.04□□□□□ -1.12
CDH3-203ENST00000542274 KLK9Q2XQG4 91 aa8.03□□□□□ -1.12
CDH3-203ENST00000542274 KLK9Q9UKQ9 250 aa8.03□□□□□ -1.12
CDH3-203ENST00000542274 C11orf86A6NJI1 115 aa8.02□□□□□ -1.12
CDH3-203ENST00000542274 MSRB1Q9NZV6 116 aa8.02□□□□□ -1.12
CDH3-203ENST00000542274 BAHCC1Q9P281 2608 aa8.02□□□□□ -1.13
CDH3-203ENST00000542274 FSHBP01225 129 aa8.02□□□□□ -1.13
CDH3-203ENST00000542274 SETD2Q9BYW2 2564 aaPredicted RBP8.02□□□□□ -1.13
CDH3-203ENST00000542274 TRAV7A0A075B6U4 112 aa8.01□□□□□ -1.13
CDH3-203ENST00000542274 GPHB5Q86YW7 130 aa8.01□□□□□ -1.13
CDH3-203ENST00000542274 C11orf21Q9P2W6 132 aa8.01□□□□□ -1.13
CDH3-203ENST00000542274 BAALC-AS2P0C853 105 aa8.01□□□□□ -1.13
CDH3-203ENST00000542274 WFDC9Q8NEX5 89 aa8.01□□□□□ -1.13
CDH3-203ENST00000542274 Q6ZVQ6 151 aa8.01□□□□□ -1.13
CDH3-203ENST00000542274 C22orf24Q9Y442 160 aa8.01□□□□□ -1.13
CDH3-203ENST00000542274 F6UB75 175 aa8□□□□□ -1.13
CDH3-203ENST00000542274 NDUFC1O43677 76 aa8□□□□□ -1.13
CDH3-203ENST00000542274 RPL11P62913 178 aaKnown RBP8□□□□□ -1.13
CDH3-203ENST00000542274 NDUFS5O43920 106 aa8□□□□□ -1.13
CDH3-203ENST00000542274 PRR9Q5T870 116 aa8□□□□□ -1.13
CDH3-203ENST00000542274 SETXQ7Z333 2677 aaKnown RBP8□□□□□ -1.13
CDH3-203ENST00000542274 A8MU10 97 aa7.99□□□□□ -1.13
CDH3-203ENST00000542274 FAM19A3Q7Z5A8 133 aa7.99□□□□□ -1.13
CDH3-203ENST00000542274 MDFIQ99750 246 aa7.99□□□□□ -1.13
CDH3-203ENST00000542274 SORL1Q92673 2214 aa7.99□□□□□ -1.13
CDH3-203ENST00000542274 TOMM6Q96B49 74 aa7.99□□□□□ -1.13
CDH3-203ENST00000542274 ANK3Q12955 4377 aaKnown RBP7.98□□□□□ -1.13
CDH3-203ENST00000542274 IGKV3D-20A0A0C4DH25 116 aa7.98□□□□□ -1.13
CDH3-203ENST00000542274 A8MUN3 132 aa7.98□□□□□ -1.13
CDH3-203ENST00000542274 KRTAP1-1Q07627 177 aa7.98□□□□□ -1.13
CDH3-203ENST00000542274 Q6YL49 198 aa7.98□□□□□ -1.13
CDH3-203ENST00000542274 SMR3AQ99954 134 aa7.98□□□□□ -1.13
CDH3-203ENST00000542274 OTOGQ6ZRI0 2925 aa7.98□□□□□ -1.13
CDH3-203ENST00000542274 IGLV4-69A0A075B6H9 119 aa7.98□□□□□ -1.13
CDH3-203ENST00000542274 IGLV1-40P01703 118 aa7.97□□□□□ -1.13
CDH3-203ENST00000542274 UBE2L6O14933 153 aa7.97□□□□□ -1.13
CDH3-203ENST00000542274 COX8CQ7Z4L0 72 aa7.97□□□□□ -1.13
CDH3-203ENST00000542274 NIPBLQ6KC79 2804 aaeCLIP7.96□□□□□ -1.13
CDH3-203ENST00000542274 NDUFA4O00483 81 aa7.96□□□□□ -1.14
CDH3-203ENST00000542274 PSPHP1O15172 72 aa7.96□□□□□ -1.14
CDH3-203ENST00000542274 MIFP14174 115 aa7.96□□□□□ -1.14
CDH3-203ENST00000542274 RHPN1-AS1Q9BWJ2 59 aa7.96□□□□□ -1.14
CDH3-203ENST00000542274 FUSP35637 526 aaKnown RBP eCLIP7.95□□□□□ -1.14
CDH3-203ENST00000542274 C14orf132Q9NPU4 83 aa7.95□□□□□ -1.14
CDH3-203ENST00000542274 VCYO14598 125 aa7.95□□□□□ -1.14
CDH3-203ENST00000542274 RNASE4P34096 147 aaKnown RBP7.95□□□□□ -1.14
CDH3-203ENST00000542274 ZNF876PQ49A33 203 aa7.95□□□□□ -1.14
CDH3-203ENST00000542274 USMG5Q96IX5 58 aa7.95□□□□□ -1.14
CDH3-203ENST00000542274 HIVEP2P31629 2446 aa7.95□□□□□ -1.14
CDH3-203ENST00000542274 SOCS3O14543 225 aa7.94□□□□□ -1.14
CDH3-203ENST00000542274 UBE2BP63146 152 aa7.94□□□□□ -1.14
CDH3-203ENST00000542274 IGIPA6NJ69 53 aa7.94□□□□□ -1.14
CDH3-203ENST00000542274 ENHOQ6UWT2 76 aa7.94□□□□□ -1.14
CDH3-203ENST00000542274 C18orf65Q6ZTR6 163 aa7.94□□□□□ -1.14
CDH3-203ENST00000542274 Q1T7F1 81 aa7.94□□□□□ -1.14
CDH3-203ENST00000542274 C2orf66Q6UXQ4 117 aa7.94□□□□□ -1.14
CDH3-203ENST00000542274 Q6ZRP5 223 aa7.94□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms