RNA–Protein interactions for RNA: ENST00000541713.5

PTPN1-202, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

TSL 2 BASIC

Gene PTPN1, Length 3,469 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-202ENST00000541713 COX6CP09669 75 aa9.66□□□□□ -0.86
PTPN1-202ENST00000541713 LINC00158P58513 81 aa9.66□□□□□ -0.86
PTPN1-202ENST00000541713 MIAQ16674 131 aa9.66□□□□□ -0.86
PTPN1-202ENST00000541713 SPATA3Q8NHX4 192 aa9.66□□□□□ -0.86
PTPN1-202ENST00000541713 Q9HAA7 133 aa9.66□□□□□ -0.86
PTPN1-202ENST00000541713 IGLV4-60A0A075B6I1 120 aa9.65□□□□□ -0.86
PTPN1-202ENST00000541713 XCL1P47992 114 aa9.65□□□□□ -0.86
PTPN1-202ENST00000541713 OR13C6PQ8NH95 151 aa9.65□□□□□ -0.86
PTPN1-202ENST00000541713 PYGO1Q9Y3Y4 419 aa9.65□□□□□ -0.86
PTPN1-202ENST00000541713 SPATA25Q9BR10 227 aa9.65□□□□□ -0.87
PTPN1-202ENST00000541713 PKD1L1Q8TDX9 2849 aa9.65□□□□□ -0.87
PTPN1-202ENST00000541713 SOSTDC1Q6X4U4 206 aa9.64□□□□□ -0.87
PTPN1-202ENST00000541713 C3orf56Q8N813 242 aa9.64□□□□□ -0.87
PTPN1-202ENST00000541713 RNF152Q8N8N0 203 aa9.63□□□□□ -0.87
PTPN1-202ENST00000541713 TMEM243Q9BU79 118 aa9.63□□□□□ -0.87
PTPN1-202ENST00000541713 Q8N3U1 123 aa9.63□□□□□ -0.87
PTPN1-202ENST00000541713 FBN1P35555 2871 aaKnown RBP9.63□□□□□ -0.87
PTPN1-202ENST00000541713 TRAV4A0A0B4J268 109 aa9.63□□□□□ -0.87
PTPN1-202ENST00000541713 LINC00308Q8TCZ7 52 aa9.63□□□□□ -0.87
PTPN1-202ENST00000541713 F8P00451 2351 aa9.63□□□□□ -0.87
PTPN1-202ENST00000541713 A0A0B4J2C4 111 aa9.62□□□□□ -0.87
PTPN1-202ENST00000541713 ZFAND6Q6FIF0 208 aa9.62□□□□□ -0.87
PTPN1-202ENST00000541713 SMIM1B2RUZ4 78 aa9.62□□□□□ -0.87
PTPN1-202ENST00000541713 GIG44P09565 113 aaPredicted RBP9.62□□□□□ -0.87
PTPN1-202ENST00000541713 H7C423 109 aa9.62□□□□□ -0.87
PTPN1-202ENST00000541713 RNASE1P07998 156 aaKnown RBP9.62□□□□□ -0.87
PTPN1-202ENST00000541713 LINC00526Q96FQ7 95 aa9.62□□□□□ -0.87
PTPN1-202ENST00000541713 TRAV26-1A0A087WT03 109 aa9.61□□□□□ -0.87
PTPN1-202ENST00000541713 TRAV8-4A0A0B4J246 113 aa9.61□□□□□ -0.87
PTPN1-202ENST00000541713 ATP5G1P05496 136 aa9.61□□□□□ -0.87
PTPN1-202ENST00000541713 CRYBA4P53673 196 aa9.61□□□□□ -0.87
PTPN1-202ENST00000541713 HERVK_113P63121 156 aa9.61□□□□□ -0.87
PTPN1-202ENST00000541713 MIR7-3HGQ8N6C7 128 aa9.61□□□□□ -0.87
PTPN1-202ENST00000541713 UBE2WQ96B02 151 aa9.61□□□□□ -0.87
PTPN1-202ENST00000541713 SNCGO76070 127 aa9.6□□□□□ -0.87
PTPN1-202ENST00000541713 BEAN1Q3B7T3 259 aa9.6□□□□□ -0.87
PTPN1-202ENST00000541713 CDC42SE2Q9NRR3 84 aa9.6□□□□□ -0.87
PTPN1-202ENST00000541713 RNF183Q96D59 192 aa9.6□□□□□ -0.87
PTPN1-202ENST00000541713 NSD1Q96L73 2696 aaPredicted RBP9.6□□□□□ -0.87
PTPN1-202ENST00000541713 GYPEP15421 78 aa9.59□□□□□ -0.87
PTPN1-202ENST00000541713 DEFB135Q30KP9 77 aa9.59□□□□□ -0.87
PTPN1-202ENST00000541713 PAX4O43316 350 aa9.59□□□□□ -0.87
PTPN1-202ENST00000541713 PRR3P79522 188 aaKnown RBP9.59□□□□□ -0.87
PTPN1-202ENST00000541713 C15orf53Q8NAA6 179 aa9.59□□□□□ -0.87
PTPN1-202ENST00000541713 TEX29Q8N6K0 151 aa9.58□□□□□ -0.88
PTPN1-202ENST00000541713 ANAPC13Q9BS18 74 aa9.58□□□□□ -0.88
PTPN1-202ENST00000541713 DNAJC30Q96LL9 226 aa9.58□□□□□ -0.88
PTPN1-202ENST00000541713 TRBV10-2A0A0K0K1G8 114 aa9.57□□□□□ -0.88
PTPN1-202ENST00000541713 C6orf226Q5I0X4 101 aa9.57□□□□□ -0.88
PTPN1-202ENST00000541713 NDUFA1O15239 70 aa9.57□□□□□ -0.88
PTPN1-202ENST00000541713 SLPIP03973 132 aa9.57□□□□□ -0.88
PTPN1-202ENST00000541713 GAGE2BQ13066 116 aa9.56□□□□□ -0.88
PTPN1-202ENST00000541713 GAGE2EQ4V326 116 aa9.56□□□□□ -0.88
PTPN1-202ENST00000541713 GAGE2DQ9UEU5 116 aa9.56□□□□□ -0.88
PTPN1-202ENST00000541713 TRBV30A0A0K0K1B3 111 aa9.55□□□□□ -0.88
PTPN1-202ENST00000541713 DAZ2Q13117 558 aaKnown RBP9.55□□□□□ -0.88
PTPN1-202ENST00000541713 DAZ4Q86SG3 579 aaKnown RBP9.55□□□□□ -0.88
PTPN1-202ENST00000541713 CLUHP3Q96NS8 147 aa9.55□□□□□ -0.88
PTPN1-202ENST00000541713 DAZ3Q9NR90 486 aaKnown RBP9.55□□□□□ -0.88
PTPN1-202ENST00000541713 ATP6V0E2Q8NHE4 81 aa9.55□□□□□ -0.88
PTPN1-202ENST00000541713 FAM218AQ96MZ4 157 aa9.54□□□□□ -0.88
PTPN1-202ENST00000541713 SPANXDQ9BXN6 97 aa9.54□□□□□ -0.88
PTPN1-202ENST00000541713 SPANXCQ9NY87 97 aa9.54□□□□□ -0.88
PTPN1-202ENST00000541713 SND1-IT1Q9HBX3 110 aa9.54□□□□□ -0.88
PTPN1-202ENST00000541713 PLAC8L1A1L4L8 177 aa9.54□□□□□ -0.88
PTPN1-202ENST00000541713 TIRAPP58753 221 aa9.54□□□□□ -0.88
PTPN1-202ENST00000541713 C9orf116Q5BN46 136 aaPredicted RBP9.53□□□□□ -0.88
PTPN1-202ENST00000541713 COX7B2Q8TF08 81 aa9.53□□□□□ -0.88
PTPN1-202ENST00000541713 C16orf74Q96GX8 76 aa9.53□□□□□ -0.88
PTPN1-202ENST00000541713 COL6A5A8TX70 2615 aa9.53□□□□□ -0.88
PTPN1-202ENST00000541713 INAFM1C9JVW0 142 aa9.53□□□□□ -0.88
PTPN1-202ENST00000541713 KRTAP10-3P60369 221 aa9.53□□□□□ -0.88
PTPN1-202ENST00000541713 FHL2Q14192 279 aa9.52□□□□□ -0.88
PTPN1-202ENST00000541713 A8MTW9 85 aa9.52□□□□□ -0.89
PTPN1-202ENST00000541713 B5MCH6 92 aa9.52□□□□□ -0.89
PTPN1-202ENST00000541713 IGLV1-51P01701 117 aa9.52□□□□□ -0.89
PTPN1-202ENST00000541713 TRBV6-8A0A0A6YYG3 113 aa9.52□□□□□ -0.89
PTPN1-202ENST00000541713 CRPP02741 224 aa9.52□□□□□ -0.89
PTPN1-202ENST00000541713 BAALC-AS2P0C853 105 aa9.52□□□□□ -0.89
PTPN1-202ENST00000541713 FAM222AQ5U5X8 452 aa9.52□□□□□ -0.89
PTPN1-202ENST00000541713 LRRC75A-AS1Q8N1F1 130 aa9.52□□□□□ -0.89
PTPN1-202ENST00000541713 LST1O00453 97 aa9.51□□□□□ -0.89
PTPN1-202ENST00000541713 KRTAP1-1Q07627 177 aa9.51□□□□□ -0.89
PTPN1-202ENST00000541713 GAGE2AQ6NT46 116 aa9.51□□□□□ -0.89
PTPN1-202ENST00000541713 LINC00337Q8N6G1 96 aa9.51□□□□□ -0.89
PTPN1-202ENST00000541713 SS18L2Q9UHA2 77 aa9.51□□□□□ -0.89
PTPN1-202ENST00000541713 TRAV25A0A0B4J276 109 aa9.5□□□□□ -0.89
PTPN1-202ENST00000541713 TRBV10-1A0A0K0K1A3 114 aa9.5□□□□□ -0.89
PTPN1-202ENST00000541713 F5H768 121 aa9.5□□□□□ -0.89
PTPN1-202ENST00000541713 LINC00269Q8N2A0 174 aa9.5□□□□□ -0.89
PTPN1-202ENST00000541713 ANGP03950 147 aaKnown RBP9.5□□□□□ -0.89
PTPN1-202ENST00000541713 BAHCC1Q9P281 2608 aa9.5□□□□□ -0.89
PTPN1-202ENST00000541713 IGLV5-39A0A0G2JS06 123 aa9.5□□□□□ -0.89
PTPN1-202ENST00000541713 SBSPONQ8IVN8 264 aa9.5□□□□□ -0.89
PTPN1-202ENST00000541713 C19orf73Q9NVV2 129 aa9.5□□□□□ -0.89
PTPN1-202ENST00000541713 ANK3Q12955 4377 aaKnown RBP9.48□□□□□ -0.89
PTPN1-202ENST00000541713 IFITM1P13164 125 aa9.48□□□□□ -0.89
PTPN1-202ENST00000541713 MGAM2Q2M2H8 2515 aa9.48□□□□□ -0.89
PTPN1-202ENST00000541713 CCL18P55774 89 aa9.48□□□□□ -0.89
PTPN1-202ENST00000541713 DNAL4O96015 105 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms