RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 IGKV3-20P01619 116 aa8.69□□□□□ -1.02
USP3-203ENST00000538686 UBE2BP63146 152 aa8.69□□□□□ -1.02
USP3-203ENST00000538686 POLEQ07864 2286 aa8.69□□□□□ -1.02
USP3-203ENST00000538686 PTPRQQ9UMZ3 2332 aa8.69□□□□□ -1.02
USP3-203ENST00000538686 Q6ZRP5 223 aa8.69□□□□□ -1.02
USP3-203ENST00000538686 TOMM7Q9P0U1 55 aa8.69□□□□□ -1.02
USP3-203ENST00000538686 Q9UF83 564 aa8.69□□□□□ -1.02
USP3-203ENST00000538686 WDFY4Q6ZS81 3184 aa8.69□□□□□ -1.02
USP3-203ENST00000538686 IGHV4-38-2P0DP08 117 aa8.68□□□□□ -1.02
USP3-203ENST00000538686 BBC3Q96PG8 261 aaPredicted RBP8.68□□□□□ -1.02
USP3-203ENST00000538686 OCR1Q9BZK8 76 aa8.68□□□□□ -1.02
USP3-203ENST00000538686 CELSR3Q9NYQ7 3312 aa8.67□□□□□ -1.02
USP3-203ENST00000538686 RNASE1P07998 156 aaKnown RBP8.67□□□□□ -1.02
USP3-203ENST00000538686 DCHS1Q96JQ0 3298 aa8.67□□□□□ -1.02
USP3-203ENST00000538686 A0A096LNT2 108 aa8.66□□□□□ -1.02
USP3-203ENST00000538686 LINC00575Q6W349 94 aa8.66□□□□□ -1.02
USP3-203ENST00000538686 UBE2L6O14933 153 aa8.65□□□□□ -1.02
USP3-203ENST00000538686 NDUFS5O43920 106 aa8.65□□□□□ -1.02
USP3-203ENST00000538686 NANOS2P60321 138 aaKnown RBP8.65□□□□□ -1.02
USP3-203ENST00000538686 RBM12B-AS1Q9P1G2 102 aa8.65□□□□□ -1.02
USP3-203ENST00000538686 KALRNO60229 2985 aa8.65□□□□□ -1.02
USP3-203ENST00000538686 STHQ8IWL8 128 aa8.65□□□□□ -1.03
USP3-203ENST00000538686 CEP250Q9BV73 2442 aa8.65□□□□□ -1.03
USP3-203ENST00000538686 C4orf48Q5BLP8 95 aa8.64□□□□□ -1.03
USP3-203ENST00000538686 ZNF843Q8N446 348 aa8.64□□□□□ -1.03
USP3-203ENST00000538686 DSPP15924 2871 aaKnown RBP8.64□□□□□ -1.03
USP3-203ENST00000538686 TRAV22A0A0B4J277 110 aa8.63□□□□□ -1.03
USP3-203ENST00000538686 IGHV3-11P01762 117 aa8.63□□□□□ -1.03
USP3-203ENST00000538686 MUC7Q8TAX7 377 aa8.63□□□□□ -1.03
USP3-203ENST00000538686 IGFL3Q6UXB1 125 aa8.63□□□□□ -1.03
USP3-203ENST00000538686 HTN1P15515 57 aa8.62□□□□□ -1.03
USP3-203ENST00000538686 C1orf64Q8NEQ6 169 aa8.62□□□□□ -1.03
USP3-203ENST00000538686 PKDREJQ9NTG1 2253 aa8.62□□□□□ -1.03
USP3-203ENST00000538686 M0R2N4 97 aa8.61□□□□□ -1.03
USP3-203ENST00000538686 IGHV4-31P0DP07 118 aa8.61□□□□□ -1.03
USP3-203ENST00000538686 LINC00588Q9Y4M8 146 aa8.61□□□□□ -1.03
USP3-203ENST00000538686 MGAQ8IWI9 3026 aa8.61□□□□□ -1.03
USP3-203ENST00000538686 LY6HO94772 140 aa8.61□□□□□ -1.03
USP3-203ENST00000538686 CD164L2Q6UWJ8 174 aa8.61□□□□□ -1.03
USP3-203ENST00000538686 ROS1P08922 2347 aa8.6□□□□□ -1.03
USP3-203ENST00000538686 IGHV3OR16-9A0A0B4J2B5 98 aa8.6□□□□□ -1.03
USP3-203ENST00000538686 A8MTW9 85 aa8.6□□□□□ -1.03
USP3-203ENST00000538686 PSPHP1O15172 72 aa8.6□□□□□ -1.03
USP3-203ENST00000538686 UBE2AP49459 152 aa8.6□□□□□ -1.03
USP3-203ENST00000538686 LMO4P61968 165 aa8.6□□□□□ -1.03
USP3-203ENST00000538686 HIGD2AQ9BW72 106 aa8.6□□□□□ -1.03
USP3-203ENST00000538686 C6orf99Q4VX62 202 aa8.6□□□□□ -1.03
USP3-203ENST00000538686 SPATA3Q8NHX4 192 aa8.6□□□□□ -1.03
USP3-203ENST00000538686 CYP4F30PQ9H0H9 118 aa8.6□□□□□ -1.03
USP3-203ENST00000538686 MED13LQ71F56 2210 aa8.59□□□□□ -1.03
USP3-203ENST00000538686 SYCNQ0VAF6 134 aa8.59□□□□□ -1.03
USP3-203ENST00000538686 LCE6AA0A183 80 aa8.58□□□□□ -1.04
USP3-203ENST00000538686 COX17Q14061 63 aa8.58□□□□□ -1.04
USP3-203ENST00000538686 DEFB114Q30KQ6 69 aa8.58□□□□□ -1.04
USP3-203ENST00000538686 IGKV4-1P06312 121 aa8.58□□□□□ -1.04
USP3-203ENST00000538686 SCXQ7RTU7 201 aa8.58□□□□□ -1.04
USP3-203ENST00000538686 TPRP12270 2363 aaKnown RBP8.58□□□□□ -1.04
USP3-203ENST00000538686 M0R378 163 aa8.57□□□□□ -1.04
USP3-203ENST00000538686 DEFB109BQ30KR1 87 aa8.57□□□□□ -1.04
USP3-203ENST00000538686 IGLV1-40P01703 118 aa8.57□□□□□ -1.04
USP3-203ENST00000538686 ZFP36P26651 326 aaKnown RBP8.56□□□□□ -1.04
USP3-203ENST00000538686 PHF5AQ7RTV0 110 aaKnown RBP8.56□□□□□ -1.04
USP3-203ENST00000538686 Q8IZM0 81 aa8.55□□□□□ -1.04
USP3-203ENST00000538686 ZFHX3Q15911 3703 aa8.55□□□□□ -1.04
USP3-203ENST00000538686 TRBV6-8A0A0A6YYG3 113 aa8.55□□□□□ -1.04
USP3-203ENST00000538686 PSCAO43653 123 aa8.55□□□□□ -1.04
USP3-203ENST00000538686 ATP11AUNQ6ZP68 121 aa8.55□□□□□ -1.04
USP3-203ENST00000538686 DOPEY2Q9Y3R5 2298 aa8.54□□□□□ -1.04
USP3-203ENST00000538686 CUL9Q8IWT3 2517 aa8.54□□□□□ -1.04
USP3-203ENST00000538686 COX7BP24311 80 aa8.54□□□□□ -1.04
USP3-203ENST00000538686 SPTBN2O15020 2390 aa8.54□□□□□ -1.04
USP3-203ENST00000538686 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.53□□□□□ -1.04
USP3-203ENST00000538686 LINC00269Q8N2A0 174 aa8.53□□□□□ -1.04
USP3-203ENST00000538686 LRCOL1A6NCL2 159 aa8.52□□□□□ -1.05
USP3-203ENST00000538686 APOC4P55056 127 aa8.52□□□□□ -1.05
USP3-203ENST00000538686 LIMD2Q9BT23 127 aa8.52□□□□□ -1.05
USP3-203ENST00000538686 DMDP11532 3685 aa8.52□□□□□ -1.05
USP3-203ENST00000538686 NDUFB1O75438 58 aa8.52□□□□□ -1.05
USP3-203ENST00000538686 INSP01308 110 aa8.52□□□□□ -1.05
USP3-203ENST00000538686 Q5VV11 94 aa8.52□□□□□ -1.05
USP3-203ENST00000538686 Q6ZQY7 126 aa8.52□□□□□ -1.05
USP3-203ENST00000538686 LINC01356Q8N9X3 169 aa8.52□□□□□ -1.05
USP3-203ENST00000538686 A8MUN3 132 aa8.51□□□□□ -1.05
USP3-203ENST00000538686 PLA2G2AP14555 144 aa8.51□□□□□ -1.05
USP3-203ENST00000538686 ZCCHC13Q8WW36 166 aaKnown RBP8.51□□□□□ -1.05
USP3-203ENST00000538686 PRRC2CQ9Y520 2896 aaKnown RBP8.51□□□□□ -1.05
USP3-203ENST00000538686 RP1L1Q8IWN7 2480 aaPredicted RBP8.51□□□□□ -1.05
USP3-203ENST00000538686 UBE2E2Q96LR5 201 aa8.5□□□□□ -1.05
USP3-203ENST00000538686 PRR3P79522 188 aaKnown RBP8.49□□□□□ -1.05
USP3-203ENST00000538686 IGHV4-30-2A0A087WSY4 118 aa8.49□□□□□ -1.05
USP3-203ENST00000538686 ZNF73O43830 326 aaPredicted RBP8.49□□□□□ -1.05
USP3-203ENST00000538686 LINC01006Q8NI28 216 aa8.49□□□□□ -1.05
USP3-203ENST00000538686 SMG1Q96Q15 3661 aaKnown RBP8.48□□□□□ -1.05
USP3-203ENST00000538686 CCL24O00175 119 aa8.48□□□□□ -1.05
USP3-203ENST00000538686 LPAL2Q16609 132 aa8.48□□□□□ -1.05
USP3-203ENST00000538686 ARRDC1-AS1Q9H2J1 176 aa8.48□□□□□ -1.05
USP3-203ENST00000538686 IGKV3OR2-268A0A0C4DH90 116 aa8.47□□□□□ -1.05
USP3-203ENST00000538686 ESM1Q9NQ30 184 aa8.47□□□□□ -1.05
USP3-203ENST00000538686 TRGV1A0A0A0MS02 117 aa8.47□□□□□ -1.05
USP3-203ENST00000538686 C16orf90A8MZG2 172 aa8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms