RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 LITAFQ99732 161 aa4.69□□□□□ -1.66
USP28-206ENST00000538224 PRO0255Q9UI72 69 aa4.69□□□□□ -1.66
USP28-206ENST00000538224 OTOGQ6ZRI0 2925 aa4.69□□□□□ -1.66
USP28-206ENST00000538224 TRAV13-1A0A0B4J241 112 aa4.68□□□□□ -1.66
USP28-206ENST00000538224 M0QXV9 152 aa4.68□□□□□ -1.66
USP28-206ENST00000538224 IGHV3-33P01772 117 aa4.68□□□□□ -1.66
USP28-206ENST00000538224 COX6CP09669 75 aa4.68□□□□□ -1.66
USP28-206ENST00000538224 MIFP14174 115 aa4.68□□□□□ -1.66
USP28-206ENST00000538224 PSMB2P49721 201 aa4.68□□□□□ -1.66
USP28-206ENST00000538224 Q1RN00 199 aa4.68□□□□□ -1.66
USP28-206ENST00000538224 C5orf47Q569G3 176 aa4.68□□□□□ -1.66
USP28-206ENST00000538224 CHCHD5Q9BSY4 110 aa4.68□□□□□ -1.66
USP28-206ENST00000538224 X6R8D5 127 aa4.68□□□□□ -1.66
USP28-206ENST00000538224 SETD2Q9BYW2 2564 aaPredicted RBP4.68□□□□□ -1.66
USP28-206ENST00000538224 JMJD1CQ15652 2540 aa4.67□□□□□ -1.66
USP28-206ENST00000538224 TRBV30A0A0K0K1B3 111 aa4.67□□□□□ -1.66
USP28-206ENST00000538224 LOC100131303A0A0U1RQF7 123 aa4.67□□□□□ -1.66
USP28-206ENST00000538224 PRSS2P07478 247 aa4.67□□□□□ -1.66
USP28-206ENST00000538224 SCGB1C2P0DMR2 95 aa4.67□□□□□ -1.66
USP28-206ENST00000538224 DEFB130BP0DP73 79 aa4.67□□□□□ -1.66
USP28-206ENST00000538224 DEFB130AP0DP74 79 aa4.67□□□□□ -1.66
USP28-206ENST00000538224 GYPEP15421 78 aa4.67□□□□□ -1.66
USP28-206ENST00000538224 ATXN8Q156A1 80 aa4.67□□□□□ -1.66
USP28-206ENST00000538224 SH2D6Q7Z4S9 175 aa4.67□□□□□ -1.66
USP28-206ENST00000538224 PRIMA1Q86XR5 153 aa4.67□□□□□ -1.66
USP28-206ENST00000538224 LINC01561Q8N1V8 128 aa4.67□□□□□ -1.66
USP28-206ENST00000538224 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP4.67□□□□□ -1.66
USP28-206ENST00000538224 WFDC9Q8NEX5 89 aa4.67□□□□□ -1.66
USP28-206ENST00000538224 Q9H8V8 135 aa4.67□□□□□ -1.66
USP28-206ENST00000538224 PRO0461Q9UI25 63 aa4.67□□□□□ -1.66
USP28-206ENST00000538224 HECTD1Q9ULT8 2610 aa4.67□□□□□ -1.66
USP28-206ENST00000538224 A0A1B0GUV1 79 aa4.66□□□□□ -1.66
USP28-206ENST00000538224 F5H768 121 aa4.66□□□□□ -1.66
USP28-206ENST00000538224 PAX4O43316 350 aa4.66□□□□□ -1.66
USP28-206ENST00000538224 DAD1P61803 113 aa4.66□□□□□ -1.66
USP28-206ENST00000538224 COX6A2Q02221 97 aa4.66□□□□□ -1.66
USP28-206ENST00000538224 MEIG1Q5JSS6 88 aa4.66□□□□□ -1.66
USP28-206ENST00000538224 FAM222AQ5U5X8 452 aa4.66□□□□□ -1.66
USP28-206ENST00000538224 ZNF625Q96I27 306 aaPredicted RBP4.66□□□□□ -1.66
USP28-206ENST00000538224 NIPBLQ6KC79 2804 aaeCLIP4.65□□□□□ -1.66
USP28-206ENST00000538224 TCL1BO95988 128 aa4.65□□□□□ -1.67
USP28-206ENST00000538224 ATP5G1P05496 136 aa4.65□□□□□ -1.67
USP28-206ENST00000538224 WFDC2Q14508 124 aa4.65□□□□□ -1.67
USP28-206ENST00000538224 SS18Q15532 418 aa4.65□□□□□ -1.67
USP28-206ENST00000538224 DEFB135Q30KP9 77 aa4.65□□□□□ -1.67
USP28-206ENST00000538224 COX7B2Q8TF08 81 aa4.65□□□□□ -1.67
USP28-206ENST00000538224 CUBNO60494 3623 aa4.65□□□□□ -1.67
USP28-206ENST00000538224 C2CD3Q4AC94 2353 aa4.64□□□□□ -1.67
USP28-206ENST00000538224 A0A087WZ39 114 aa4.64□□□□□ -1.67
USP28-206ENST00000538224 IGHV4-28A0A0C4DH34 117 aa4.64□□□□□ -1.67
USP28-206ENST00000538224 A8MZ25 164 aa4.64□□□□□ -1.67
USP28-206ENST00000538224 SPART-AS1P0CW21 52 aa4.64□□□□□ -1.67
USP28-206ENST00000538224 RPL13AP40429 203 aaKnown RBP4.64□□□□□ -1.67
USP28-206ENST00000538224 ETDBQ3ZM63 59 aa4.64□□□□□ -1.67
USP28-206ENST00000538224 ADAMTSL4-AS1Q5T5F5 129 aa4.64□□□□□ -1.67
USP28-206ENST00000538224 TEN1Q86WV5 123 aa4.64□□□□□ -1.67
USP28-206ENST00000538224 LINC00308Q8TCZ7 52 aa4.64□□□□□ -1.67
USP28-206ENST00000538224 PPDPFLQ8WWR9 84 aa4.64□□□□□ -1.67
USP28-206ENST00000538224 LINC01600Q96MT4 127 aa4.64□□□□□ -1.67
USP28-206ENST00000538224 SS18L2Q9UHA2 77 aa4.64□□□□□ -1.67
USP28-206ENST00000538224 ICOSQ9Y6W8 199 aa4.64□□□□□ -1.67
USP28-206ENST00000538224 IGHV3OR16-9A0A0B4J2B5 98 aa4.63□□□□□ -1.67
USP28-206ENST00000538224 LINC00959A0A1B0GUT2 108 aa4.63□□□□□ -1.67
USP28-206ENST00000538224 IBA57-AS1B1ANH7 110 aa4.63□□□□□ -1.67
USP28-206ENST00000538224 TMEM262E9PQX1 116 aa4.63□□□□□ -1.67
USP28-206ENST00000538224 H7C2G1 150 aa4.63□□□□□ -1.67
USP28-206ENST00000538224 TRIAP1O43715 76 aa4.63□□□□□ -1.67
USP28-206ENST00000538224 Q8NAQ8 132 aa4.63□□□□□ -1.67
USP28-206ENST00000538224 NOTCH2Q04721 2471 aa4.63□□□□□ -1.67
USP28-206ENST00000538224 TEP1Q99973 2627 aaKnown RBP4.62□□□□□ -1.67
USP28-206ENST00000538224 NOTCH3Q9UM47 2321 aa4.62□□□□□ -1.67
USP28-206ENST00000538224 IGLV4-60A0A075B6I1 120 aa4.62□□□□□ -1.67
USP28-206ENST00000538224 TRAV13-2A0A0B4J235 113 aa4.62□□□□□ -1.67
USP28-206ENST00000538224 C9JAW5 83 aa4.62□□□□□ -1.67
USP28-206ENST00000538224 H3BT86 120 aa4.62□□□□□ -1.67
USP28-206ENST00000538224 SLC25A20O43772 301 aa4.62□□□□□ -1.67
USP28-206ENST00000538224 EIF4EBP3O60516 100 aaPredicted RBP4.62□□□□□ -1.67
USP28-206ENST00000538224 IGHV4-30-4P0DP06 118 aa4.62□□□□□ -1.67
USP28-206ENST00000538224 CXCL5P42830 114 aa4.62□□□□□ -1.67
USP28-206ENST00000538224 FOXI1Q12951 378 aa4.62□□□□□ -1.67
USP28-206ENST00000538224 MRPL23Q16540 153 aaKnown RBP4.62□□□□□ -1.67
USP28-206ENST00000538224 LINC01620Q4KN68 170 aa4.62□□□□□ -1.67
USP28-206ENST00000538224 FN1P02751 2386 aaKnown RBP4.61□□□□□ -1.67
USP28-206ENST00000538224 IGKV3OR2-268A0A0C4DH90 116 aa4.61□□□□□ -1.67
USP28-206ENST00000538224 TRBV10-2A0A0K0K1G8 114 aa4.61□□□□□ -1.67
USP28-206ENST00000538224 CRPP02741 224 aa4.61□□□□□ -1.67
USP28-206ENST00000538224 SMCPP49901 116 aaPredicted RBP4.61□□□□□ -1.67
USP28-206ENST00000538224 NPC2P61916 151 aa4.61□□□□□ -1.67
USP28-206ENST00000538224 Q8IZM0 81 aa4.61□□□□□ -1.67
USP28-206ENST00000538224 ANKRD29Q8N6D5 301 aa4.61□□□□□ -1.67
USP28-206ENST00000538224 MUC7Q8TAX7 377 aa4.61□□□□□ -1.67
USP28-206ENST00000538224 TMEM126AQ9H061 195 aa4.61□□□□□ -1.67
USP28-206ENST00000538224 TOMM7Q9P0U1 55 aa4.61□□□□□ -1.67
USP28-206ENST00000538224 HIVEP1P15822 2718 aa4.6□□□□□ -1.67
USP28-206ENST00000538224 H3BNG1 76 aa4.6□□□□□ -1.67
USP28-206ENST00000538224 LST1O00453 97 aa4.6□□□□□ -1.67
USP28-206ENST00000538224 COX7A2LO14548 114 aa4.6□□□□□ -1.67
USP28-206ENST00000538224 LELP1Q5T871 98 aa4.6□□□□□ -1.67
USP28-206ENST00000538224 CD164L2Q6UWJ8 174 aa4.6□□□□□ -1.67
USP28-206ENST00000538224 SMIM20Q8N5G0 67 aa4.6□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms