RNA–Protein interactions for RNA: ENST00000525078.1

USP47-204, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-204ENST00000525078 BET1LQ9NYM9 111 aa2.53□□□□□ -2
USP47-204ENST00000525078 ARFGEF3Q5TH69 2177 aa2.53□□□□□ -2
USP47-204ENST00000525078 TRBV7-3A0A075B6L6 115 aa2.52□□□□□ -2.01
USP47-204ENST00000525078 IGKV3D-7A0A0C4DH55 119 aa2.52□□□□□ -2.01
USP47-204ENST00000525078 IGKV3OR2-268A0A0C4DH90 116 aa2.52□□□□□ -2.01
USP47-204ENST00000525078 PDCD5O14737 125 aa2.52□□□□□ -2.01
USP47-204ENST00000525078 SNRNP200O75643 2136 aaKnown RBP2.52□□□□□ -2.01
USP47-204ENST00000525078 GYPAP02724 150 aa2.52□□□□□ -2.01
USP47-204ENST00000525078 S100A3P33764 101 aa2.52□□□□□ -2.01
USP47-204ENST00000525078 RPL38P63173 70 aaKnown RBP2.52□□□□□ -2.01
USP47-204ENST00000525078 FXYD3Q14802 87 aa2.52□□□□□ -2.01
USP47-204ENST00000525078 KRTAP5-2Q701N4 177 aa2.52□□□□□ -2.01
USP47-204ENST00000525078 DEFB106AQ8N104 65 aa2.52□□□□□ -2.01
USP47-204ENST00000525078 ZNF563Q8TA94 476 aa2.52□□□□□ -2.01
USP47-204ENST00000525078 SMIM4Q8WVI0 70 aa2.52□□□□□ -2.01
USP47-204ENST00000525078 OBSCN-AS1Q96MR7 158 aa2.52□□□□□ -2.01
USP47-204ENST00000525078 MGST2Q99735 147 aa2.52□□□□□ -2.01
USP47-204ENST00000525078 EXPH5Q8NEV8 1989 aa2.51□□□□□ -2.01
USP47-204ENST00000525078 TRAV1-2A0A0B4J238 106 aa2.51□□□□□ -2.01
USP47-204ENST00000525078 ZNF56Q15929 161 aa2.51□□□□□ -2.01
USP47-204ENST00000525078 RPS27LQ71UM5 84 aaKnown RBP2.51□□□□□ -2.01
USP47-204ENST00000525078 COX7B2Q8TF08 81 aa2.51□□□□□ -2.01
USP47-204ENST00000525078 ABRACLQ9P1F3 81 aa2.51□□□□□ -2.01
USP47-204ENST00000525078 SPAG17Q6Q759 2223 aa2.5□□□□□ -2.01
USP47-204ENST00000525078 TNRC6BQ9UPQ9 1833 aaKnown RBP2.5□□□□□ -2.01
USP47-204ENST00000525078 NBDYA0A0U1RRE5 68 aa2.5□□□□□ -2.01
USP47-204ENST00000525078 SFT2D2O95562 160 aa2.5□□□□□ -2.01
USP47-204ENST00000525078 CFDP00746 253 aaPredicted RBP2.5□□□□□ -2.01
USP47-204ENST00000525078 CCL3L1P16619 93 aa2.5□□□□□ -2.01
USP47-204ENST00000525078 HMGN3Q15651 99 aa2.5□□□□□ -2.01
USP47-204ENST00000525078 UNQ6190/PRO20217Q6UXQ8 127 aa2.5□□□□□ -2.01
USP47-204ENST00000525078 TOMM5Q8N4H5 51 aa2.5□□□□□ -2.01
USP47-204ENST00000525078 LCN9Q8WX39 176 aa2.5□□□□□ -2.01
USP47-204ENST00000525078 UQCR10Q9UDW1 63 aa2.5□□□□□ -2.01
USP47-204ENST00000525078 KIAA0100Q14667 2235 aaKnown RBP2.5□□□□□ -2.01
USP47-204ENST00000525078 CASP8AP2Q9UKL3 1982 aa2.5□□□□□ -2.01
USP47-204ENST00000525078 INTS1Q8N201 2190 aaKnown RBP2.5□□□□□ -2.01
USP47-204ENST00000525078 CACNA1GO43497 2377 aa2.5□□□□□ -2.01
USP47-204ENST00000525078 IGKV2-40A0A087WW87 121 aaPredicted RBP2.49□□□□□ -2.01
USP47-204ENST00000525078 NDUFC1O43677 76 aa2.49□□□□□ -2.01
USP47-204ENST00000525078 IGKV2D-40P01614 121 aaPredicted RBP2.49□□□□□ -2.01
USP47-204ENST00000525078 APOC3P02656 99 aa2.49□□□□□ -2.01
USP47-204ENST00000525078 PP632Q6XCG6 107 aa2.49□□□□□ -2.01
USP47-204ENST00000525078 DEFB132Q7Z7B7 95 aa2.49□□□□□ -2.01
USP47-204ENST00000525078 C5orf56Q8N8D9 126 aa2.49□□□□□ -2.01
USP47-204ENST00000525078 COL4A6Q14031 1691 aa2.49□□□□□ -2.01
USP47-204ENST00000525078 CHKB-CPT1BH3BT56 60 aa2.48□□□□□ -2.01
USP47-204ENST00000525078 ELOF1P60002 83 aaKnown RBP2.48□□□□□ -2.01
USP47-204ENST00000525078 PEA15Q15121 130 aa2.48□□□□□ -2.01
USP47-204ENST00000525078 SMCO4Q9NRQ5 59 aa2.48□□□□□ -2.01
USP47-204ENST00000525078 ESPL1Q14674 2120 aa2.48□□□□□ -2.01
USP47-204ENST00000525078 KANTRA0A1W2PQU2 76 aa2.47□□□□□ -2.01
USP47-204ENST00000525078 CLPSL1A2RUU4 121 aa2.47□□□□□ -2.01
USP47-204ENST00000525078 PPP1R17O96001 155 aa2.47□□□□□ -2.01
USP47-204ENST00000525078 HMGA1P17096 107 aaKnown RBP2.47□□□□□ -2.01
USP47-204ENST00000525078 EDDM3BP56851 147 aa2.47□□□□□ -2.01
USP47-204ENST00000525078 DEFA5Q01523 94 aa2.47□□□□□ -2.01
USP47-204ENST00000525078 ALKAL2Q6UX46 152 aa2.47□□□□□ -2.01
USP47-204ENST00000525078 Q6ZQY7 126 aa2.47□□□□□ -2.01
USP47-204ENST00000525078 LINC00208Q96KT6 92 aa2.47□□□□□ -2.01
USP47-204ENST00000525078 S100A13Q99584 98 aa2.47□□□□□ -2.01
USP47-204ENST00000525078 DYNLRB1Q9NP97 96 aa2.47□□□□□ -2.01
USP47-204ENST00000525078 PRO1854Q9UHT4 67 aa2.47□□□□□ -2.01
USP47-204ENST00000525078 V9GYV3 84 aa2.47□□□□□ -2.01
USP47-204ENST00000525078 BPTFQ12830 3046 aa2.47□□□□□ -2.01
USP47-204ENST00000525078 TRBV7-7A0A0K0K1E9 115 aa2.46□□□□□ -2.02
USP47-204ENST00000525078 LOC730098B7Z3J9 87 aa2.46□□□□□ -2.02
USP47-204ENST00000525078 K7EP34 96 aa2.46□□□□□ -2.02
USP47-204ENST00000525078 CYB5AP00167 134 aa2.46□□□□□ -2.02
USP47-204ENST00000525078 IFI6P09912 130 aa2.46□□□□□ -2.02
USP47-204ENST00000525078 Q86TA4 180 aa2.46□□□□□ -2.02
USP47-204ENST00000525078 SERP2Q8N6R1 65 aa2.46□□□□□ -2.02
USP47-204ENST00000525078 FAM167A-AS1Q96KT0 104 aa2.46□□□□□ -2.02
USP47-204ENST00000525078 TRGV9Q99603 122 aa2.46□□□□□ -2.02
USP47-204ENST00000525078 CYSTM1Q9H1C7 97 aa2.46□□□□□ -2.02
USP47-204ENST00000525078 LENEPQ9Y5L5 61 aa2.46□□□□□ -2.02
USP47-204ENST00000525078 A0A087WWC5 75 aa2.45□□□□□ -2.02
USP47-204ENST00000525078 FXYD6-FXYD2A0A087WZ82 144 aa2.45□□□□□ -2.02
USP47-204ENST00000525078 COX6CP09669 75 aa2.45□□□□□ -2.02
USP47-204ENST00000525078 PCOTHQ58A44 107 aa2.45□□□□□ -2.02
USP47-204ENST00000525078 NMES1Q9C002 83 aa2.45□□□□□ -2.02
USP47-204ENST00000525078 FXYD6Q9H0Q3 95 aa2.45□□□□□ -2.02
USP47-204ENST00000525078 CMC2Q9NRP2 79 aa2.45□□□□□ -2.02
USP47-204ENST00000525078 TET1Q8NFU7 2136 aa2.44□□□□□ -2.02
USP47-204ENST00000525078 TRAV22A0A0B4J277 110 aa2.44□□□□□ -2.02
USP47-204ENST00000525078 A0A1W2PPM0 123 aa2.44□□□□□ -2.02
USP47-204ENST00000525078 CCL22O00626 93 aa2.44□□□□□ -2.02
USP47-204ENST00000525078 CAV3P56539 151 aa2.44□□□□□ -2.02
USP47-204ENST00000525078 SPAG11BQ08648 103 aa2.44□□□□□ -2.02
USP47-204ENST00000525078 SPAG11AQ6PDA7 123 aa2.44□□□□□ -2.02
USP47-204ENST00000525078 SFTA2Q6UW10 78 aa2.44□□□□□ -2.02
USP47-204ENST00000525078 Q8N6K4 173 aa2.44□□□□□ -2.02
USP47-204ENST00000525078 S100A16Q96FQ6 103 aaKnown RBP2.44□□□□□ -2.02
USP47-204ENST00000525078 NDUFA4L2Q9NRX3 87 aa2.44□□□□□ -2.02
USP47-204ENST00000525078 CACFD1Q9UGQ2 172 aa2.44□□□□□ -2.02
USP47-204ENST00000525078 BAHCC1Q9P281 2608 aa2.44□□□□□ -2.02
USP47-204ENST00000525078 HMGN4O00479 90 aa2.43□□□□□ -2.02
USP47-204ENST00000525078 SFTA3P0C7M3 94 aa2.43□□□□□ -2.02
USP47-204ENST00000525078 UBE2D3P61077 147 aa2.43□□□□□ -2.02
USP47-204ENST00000525078 UBE2D2P62837 147 aa2.43□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms