RNA–Protein interactions for RNA: ENST00000509552.5

CCHCR1-228, Transcript of coiled-coil alpha-helical rod protein 1, humanhuman

TSL 1 (best)

Gene CCHCR1, Length 2,304 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1-228ENST00000509552 NOTCH3Q9UM47 2321 aa12.71□□□□□ -0.37
CCHCR1-228ENST00000509552 A0A0U1RRA0 63 aa12.71□□□□□ -0.37
CCHCR1-228ENST00000509552 HERV-K104P63124 156 aa12.71□□□□□ -0.37
CCHCR1-228ENST00000509552 LOC100131303A0A0U1RQF7 123 aa12.71□□□□□ -0.38
CCHCR1-228ENST00000509552 F5H768 121 aa12.71□□□□□ -0.38
CCHCR1-228ENST00000509552 HILS1P60008 231 aa12.7□□□□□ -0.38
CCHCR1-228ENST00000509552 SETXQ7Z333 2677 aaKnown RBP12.7□□□□□ -0.38
CCHCR1-228ENST00000509552 XGP55808 180 aa12.7□□□□□ -0.38
CCHCR1-228ENST00000509552 C2orf82Q6UX34 121 aa12.7□□□□□ -0.38
CCHCR1-228ENST00000509552 LST1O00453 97 aa12.69□□□□□ -0.38
CCHCR1-228ENST00000509552 MT-ATP8P03928 68 aa12.69□□□□□ -0.38
CCHCR1-228ENST00000509552 CLEC2BQ92478 149 aa12.69□□□□□ -0.38
CCHCR1-228ENST00000509552 CUBNO60494 3623 aa12.69□□□□□ -0.38
CCHCR1-228ENST00000509552 JMJD1CQ15652 2540 aa12.69□□□□□ -0.38
CCHCR1-228ENST00000509552 H3BT86 120 aa12.68□□□□□ -0.38
CCHCR1-228ENST00000509552 UBE2WQ96B02 151 aa12.67□□□□□ -0.38
CCHCR1-228ENST00000509552 A0A1B0GV72 72 aa12.67□□□□□ -0.38
CCHCR1-228ENST00000509552 GAGE6Q13070 117 aa12.67□□□□□ -0.38
CCHCR1-228ENST00000509552 TENM4Q6N022 2769 aa12.67□□□□□ -0.38
CCHCR1-228ENST00000509552 FHL2Q14192 279 aa12.66□□□□□ -0.38
CCHCR1-228ENST00000509552 ACANP16112 2415 aa12.66□□□□□ -0.38
CCHCR1-228ENST00000509552 TEX49A0A1B0GTD5 131 aa12.66□□□□□ -0.38
CCHCR1-228ENST00000509552 PLA2G2AP14555 144 aa12.66□□□□□ -0.38
CCHCR1-228ENST00000509552 TRBV6-8A0A0A6YYG3 113 aa12.65□□□□□ -0.38
CCHCR1-228ENST00000509552 NIPBLQ6KC79 2804 aaeCLIP12.65□□□□□ -0.38
CCHCR1-228ENST00000509552 PDZD2O15018 2839 aa12.65□□□□□ -0.38
CCHCR1-228ENST00000509552 SOSTDC1Q6X4U4 206 aa12.65□□□□□ -0.39
CCHCR1-228ENST00000509552 CHCHD5Q9BSY4 110 aa12.64□□□□□ -0.39
CCHCR1-228ENST00000509552 C2CD3Q4AC94 2353 aa12.64□□□□□ -0.39
CCHCR1-228ENST00000509552 MTORP42345 2549 aa12.64□□□□□ -0.39
CCHCR1-228ENST00000509552 IGKV3OR2-268A0A0C4DH90 116 aa12.63□□□□□ -0.39
CCHCR1-228ENST00000509552 PF4P02776 101 aa12.63□□□□□ -0.39
CCHCR1-228ENST00000509552 COX7B2Q8TF08 81 aa12.63□□□□□ -0.39
CCHCR1-228ENST00000509552 PPDPFQ9H3Y8 114 aa12.63□□□□□ -0.39
CCHCR1-228ENST00000509552 ANK3Q12955 4377 aaKnown RBP12.63□□□□□ -0.39
CCHCR1-228ENST00000509552 TRAV8-4A0A0B4J246 113 aa12.62□□□□□ -0.39
CCHCR1-228ENST00000509552 CKS1BP61024 79 aa12.62□□□□□ -0.39
CCHCR1-228ENST00000509552 J3QKU1 62 aa12.61□□□□□ -0.39
CCHCR1-228ENST00000509552 COX7A2LO14548 114 aa12.61□□□□□ -0.39
CCHCR1-228ENST00000509552 IGLV4-60A0A075B6I1 120 aa12.61□□□□□ -0.39
CCHCR1-228ENST00000509552 DEFB130BP0DP73 79 aa12.61□□□□□ -0.39
CCHCR1-228ENST00000509552 DEFB130AP0DP74 79 aa12.61□□□□□ -0.39
CCHCR1-228ENST00000509552 SHISA2Q6UWI4 295 aa12.6□□□□□ -0.39
CCHCR1-228ENST00000509552 KIR2DL5BQ8NHK3 375 aa12.6□□□□□ -0.39
CCHCR1-228ENST00000509552 TOMM7Q9P0U1 55 aa12.6□□□□□ -0.39
CCHCR1-228ENST00000509552 CRLF1O75462 422 aa12.58□□□□□ -0.4
CCHCR1-228ENST00000509552 IGHV3OR16-9A0A0B4J2B5 98 aa12.57□□□□□ -0.4
CCHCR1-228ENST00000509552 LINC00482Q8N8I6 264 aa12.57□□□□□ -0.4
CCHCR1-228ENST00000509552 TRAV13-2A0A0B4J235 113 aa12.56□□□□□ -0.4
CCHCR1-228ENST00000509552 SNCGO76070 127 aa12.56□□□□□ -0.4
CCHCR1-228ENST00000509552 KRTAP10-3P60369 221 aa12.56□□□□□ -0.4
CCHCR1-228ENST00000509552 MIR7-3HGQ8N6C7 128 aa12.56□□□□□ -0.4
CCHCR1-228ENST00000509552 LINC00612Q8N6U2 182 aa12.55□□□□□ -0.4
CCHCR1-228ENST00000509552 ITPR2Q14571 2701 aa12.55□□□□□ -0.4
CCHCR1-228ENST00000509552 A0A087WZ39 114 aa12.55□□□□□ -0.4
CCHCR1-228ENST00000509552 GYPEP15421 78 aa12.55□□□□□ -0.4
CCHCR1-228ENST00000509552 LINC00158P58513 81 aa12.54□□□□□ -0.4
CCHCR1-228ENST00000509552 SMR3AQ99954 134 aa12.54□□□□□ -0.4
CCHCR1-228ENST00000509552 CRPP02741 224 aa12.54□□□□□ -0.4
CCHCR1-228ENST00000509552 DEFB121Q5J5C9 76 aa12.54□□□□□ -0.4
CCHCR1-228ENST00000509552 FAM222AQ5U5X8 452 aa12.54□□□□□ -0.4
CCHCR1-228ENST00000509552 SMIM9A6NGZ8 99 aa12.53□□□□□ -0.4
CCHCR1-228ENST00000509552 CITED1Q99966 193 aa12.53□□□□□ -0.4
CCHCR1-228ENST00000509552 LINC00959A0A1B0GUT2 108 aa12.53□□□□□ -0.4
CCHCR1-228ENST00000509552 TRACP01848 142 aa12.53□□□□□ -0.4
CCHCR1-228ENST00000509552 C5orf38Q86SI9 138 aa12.53□□□□□ -0.4
CCHCR1-228ENST00000509552 SND1-IT1Q9HBX3 110 aa12.53□□□□□ -0.4
CCHCR1-228ENST00000509552 HIVEP2P31629 2446 aa12.52□□□□□ -0.41
CCHCR1-228ENST00000509552 IBA57-AS1B1ANH7 110 aa12.51□□□□□ -0.41
CCHCR1-228ENST00000509552 X6R8D5 127 aa12.51□□□□□ -0.41
CCHCR1-228ENST00000509552 FAM240AA0A1B0GVK7 77 aa12.51□□□□□ -0.41
CCHCR1-228ENST00000509552 PRO0255Q9UI72 69 aa12.51□□□□□ -0.41
CCHCR1-228ENST00000509552 GAGE2BQ13066 116 aa12.5□□□□□ -0.41
CCHCR1-228ENST00000509552 GAGE2EQ4V326 116 aa12.5□□□□□ -0.41
CCHCR1-228ENST00000509552 GAGE2DQ9UEU5 116 aa12.5□□□□□ -0.41
CCHCR1-228ENST00000509552 RPL28P46779 137 aaKnown RBP12.5□□□□□ -0.41
CCHCR1-228ENST00000509552 SS18Q15532 418 aa12.5□□□□□ -0.41
CCHCR1-228ENST00000509552 UNC79Q9P2D8 2635 aa12.49□□□□□ -0.41
CCHCR1-228ENST00000509552 A0A1B0GUV1 79 aa12.49□□□□□ -0.41
CCHCR1-228ENST00000509552 C15orf53Q8NAA6 179 aa12.49□□□□□ -0.41
CCHCR1-228ENST00000509552 C6orf226Q5I0X4 101 aa12.48□□□□□ -0.41
CCHCR1-228ENST00000509552 C9orf66Q5T8R8 295 aa12.48□□□□□ -0.41
CCHCR1-228ENST00000509552 LINC00337Q8N6G1 96 aa12.48□□□□□ -0.41
CCHCR1-228ENST00000509552 MRPL23Q16540 153 aaKnown RBP12.48□□□□□ -0.41
CCHCR1-228ENST00000509552 IGKV2-28A0A075B6P5 120 aa12.47□□□□□ -0.41
CCHCR1-228ENST00000509552 IGKV2D-28P01615 120 aa12.47□□□□□ -0.41
CCHCR1-228ENST00000509552 PFN2P35080 140 aa12.47□□□□□ -0.41
CCHCR1-228ENST00000509552 CCL18P55774 89 aa12.47□□□□□ -0.41
CCHCR1-228ENST00000509552 LYRM9A8MSI8 78 aa12.46□□□□□ -0.41
CCHCR1-228ENST00000509552 LY6G6DO95868 133 aa12.46□□□□□ -0.41
CCHCR1-228ENST00000509552 XCL1P47992 114 aa12.46□□□□□ -0.41
CCHCR1-228ENST00000509552 PAX4O43316 350 aa12.46□□□□□ -0.41
CCHCR1-228ENST00000509552 BAALC-AS2P0C853 105 aa12.46□□□□□ -0.41
CCHCR1-228ENST00000509552 Q6Q795 121 aa12.45□□□□□ -0.42
CCHCR1-228ENST00000509552 FAM218AQ96MZ4 157 aa12.45□□□□□ -0.42
CCHCR1-228ENST00000509552 ANAPC13Q9BS18 74 aa12.45□□□□□ -0.42
CCHCR1-228ENST00000509552 HELZ2Q9BYK8 2649 aaKnown RBP12.45□□□□□ -0.42
CCHCR1-228ENST00000509552 A0A096LPF7 62 aa12.45□□□□□ -0.42
CCHCR1-228ENST00000509552 ACYP1P07311 99 aa12.44□□□□□ -0.42
CCHCR1-228ENST00000509552 C11orf68Q9H3H3 251 aaKnown RBP12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms