RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 ADAMTSL4-AS1Q5T5F5 129 aa7.71□□□□□ -1.17
LIMCH1-205ENST00000503057 RNF183Q96D59 192 aa7.71□□□□□ -1.17
LIMCH1-205ENST00000503057 MUC7Q8TAX7 377 aa7.71□□□□□ -1.18
LIMCH1-205ENST00000503057 SMIM20Q8N5G0 67 aa7.71□□□□□ -1.18
LIMCH1-205ENST00000503057 CACNA1AO00555 2505 aa7.71□□□□□ -1.18
LIMCH1-205ENST00000503057 SMIM11BQ8TCY0 68 aa7.71□□□□□ -1.18
LIMCH1-205ENST00000503057 A0A087WZ39 114 aa7.7□□□□□ -1.18
LIMCH1-205ENST00000503057 DEFB131BA0A096LNP1 70 aa7.7□□□□□ -1.18
LIMCH1-205ENST00000503057 SHISA2Q6UWI4 295 aa7.69□□□□□ -1.18
LIMCH1-205ENST00000503057 HIVEP3Q5T1R4 2406 aa7.69□□□□□ -1.18
LIMCH1-205ENST00000503057 ANKRD11Q6UB99 2663 aaPredicted RBP7.69□□□□□ -1.18
LIMCH1-205ENST00000503057 SLPIP03973 132 aa7.69□□□□□ -1.18
LIMCH1-205ENST00000503057 CEP295Q9C0D2 2601 aa7.69□□□□□ -1.18
LIMCH1-205ENST00000503057 M0QXV9 152 aa7.68□□□□□ -1.18
LIMCH1-205ENST00000503057 XGP55808 180 aa7.68□□□□□ -1.18
LIMCH1-205ENST00000503057 NREPQ16612 68 aa7.68□□□□□ -1.18
LIMCH1-205ENST00000503057 ATP5EP2Q5VTU8 51 aa7.68□□□□□ -1.18
LIMCH1-205ENST00000503057 IMUPQ9GZP8 106 aa7.68□□□□□ -1.18
LIMCH1-205ENST00000503057 IGLV4-60A0A075B6I1 120 aa7.68□□□□□ -1.18
LIMCH1-205ENST00000503057 FAM240AA0A1B0GVK7 77 aa7.67□□□□□ -1.18
LIMCH1-205ENST00000503057 C6orf99Q4VX62 202 aa7.67□□□□□ -1.18
LIMCH1-205ENST00000503057 SMR3AQ99954 134 aa7.67□□□□□ -1.18
LIMCH1-205ENST00000503057 WNK1Q9H4A3 2382 aa7.67□□□□□ -1.18
LIMCH1-205ENST00000503057 RPL28P46779 137 aaKnown RBP7.67□□□□□ -1.18
LIMCH1-205ENST00000503057 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP7.67□□□□□ -1.18
LIMCH1-205ENST00000503057 FSHBP01225 129 aa7.66□□□□□ -1.18
LIMCH1-205ENST00000503057 PIEZO1Q92508 2521 aa7.66□□□□□ -1.18
LIMCH1-205ENST00000503057 MKI67P46013 3256 aaKnown RBP7.66□□□□□ -1.18
LIMCH1-205ENST00000503057 FHL3Q13643 280 aa7.66□□□□□ -1.18
LIMCH1-205ENST00000503057 TRAV23DV6A0A075B6W5 121 aa7.66□□□□□ -1.18
LIMCH1-205ENST00000503057 KPRPQ5T749 579 aaPredicted RBP7.66□□□□□ -1.18
LIMCH1-205ENST00000503057 PRRC2AP48634 2157 aaKnown RBP7.66□□□□□ -1.18
LIMCH1-205ENST00000503057 A0A1B0GUV1 79 aa7.65□□□□□ -1.18
LIMCH1-205ENST00000503057 IGHV4-30-4P0DP06 118 aa7.65□□□□□ -1.18
LIMCH1-205ENST00000503057 SDIM1Q6ZPB5 146 aa7.65□□□□□ -1.18
LIMCH1-205ENST00000503057 SORL1Q92673 2214 aa7.65□□□□□ -1.19
LIMCH1-205ENST00000503057 TMEM258P61165 79 aa7.65□□□□□ -1.19
LIMCH1-205ENST00000503057 IGLV5-39A0A0G2JS06 123 aa7.64□□□□□ -1.19
LIMCH1-205ENST00000503057 XAGE1AQ9HD64 81 aa7.64□□□□□ -1.19
LIMCH1-205ENST00000503057 Q6Q795 121 aa7.64□□□□□ -1.19
LIMCH1-205ENST00000503057 LINC01561Q8N1V8 128 aa7.64□□□□□ -1.19
LIMCH1-205ENST00000503057 UPK3BQ9BT76 320 aa7.64□□□□□ -1.19
LIMCH1-205ENST00000503057 UQCRQO14949 82 aa7.63□□□□□ -1.19
LIMCH1-205ENST00000503057 J3KT08 172 aa7.63□□□□□ -1.19
LIMCH1-205ENST00000503057 SYCNQ0VAF6 134 aa7.63□□□□□ -1.19
LIMCH1-205ENST00000503057 TRAV10A0A0B4J240 114 aa7.63□□□□□ -1.19
LIMCH1-205ENST00000503057 C14orf177Q52M58 125 aa7.63□□□□□ -1.19
LIMCH1-205ENST00000503057 IGLV5-45A0A087WSX0 123 aa7.62□□□□□ -1.19
LIMCH1-205ENST00000503057 M0R378 163 aa7.62□□□□□ -1.19
LIMCH1-205ENST00000503057 KLK5Q9Y337 293 aaPredicted RBP7.62□□□□□ -1.19
LIMCH1-205ENST00000503057 CYSRT1A8MQ03 144 aa7.61□□□□□ -1.19
LIMCH1-205ENST00000503057 LINC00526Q96FQ7 95 aa7.61□□□□□ -1.19
LIMCH1-205ENST00000503057 C3orf22Q8N5N4 141 aa7.6□□□□□ -1.19
LIMCH1-205ENST00000503057 NTM-AS1Q6ZSK4 140 aa7.6□□□□□ -1.19
LIMCH1-205ENST00000503057 PTPN13Q12923 2485 aa7.6□□□□□ -1.19
LIMCH1-205ENST00000503057 RANBP2P49792 3224 aaKnown RBP7.6□□□□□ -1.19
LIMCH1-205ENST00000503057 UBE2AP49459 152 aa7.59□□□□□ -1.19
LIMCH1-205ENST00000503057 NDUFC2O95298 119 aa7.59□□□□□ -1.19
LIMCH1-205ENST00000503057 NDUFB1O75438 58 aa7.59□□□□□ -1.19
LIMCH1-205ENST00000503057 Q6ZQY7 126 aa7.59□□□□□ -1.19
LIMCH1-205ENST00000503057 A0A087WYN8 130 aa7.58□□□□□ -1.2
LIMCH1-205ENST00000503057 MP68P56378 58 aa7.58□□□□□ -1.2
LIMCH1-205ENST00000503057 AGRNO00468 2067 aa7.58□□□□□ -1.2
LIMCH1-205ENST00000503057 ENHOQ6UWT2 76 aa7.58□□□□□ -1.2
LIMCH1-205ENST00000503057 ZNF73O43830 326 aaPredicted RBP7.58□□□□□ -1.2
LIMCH1-205ENST00000503057 UNQ6190/PRO20217Q6UXQ8 127 aa7.58□□□□□ -1.2
LIMCH1-205ENST00000503057 Q8N814 137 aa7.58□□□□□ -1.2
LIMCH1-205ENST00000503057 Q6JHZ5 121 aa7.58□□□□□ -1.2
LIMCH1-205ENST00000503057 PRO0461Q9UI25 63 aa7.58□□□□□ -1.2
LIMCH1-205ENST00000503057 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.58□□□□□ -1.2
LIMCH1-205ENST00000503057 A8MTW9 85 aa7.57□□□□□ -1.2
LIMCH1-205ENST00000503057 CCKP06307 115 aa7.57□□□□□ -1.2
LIMCH1-205ENST00000503057 OXLD1Q5BKU9 147 aa7.57□□□□□ -1.2
LIMCH1-205ENST00000503057 A0A0J9YWU9 116 aa7.57□□□□□ -1.2
LIMCH1-205ENST00000503057 BPY2O14599 106 aa7.57□□□□□ -1.2
LIMCH1-205ENST00000503057 EGFEM1PQ0D2K5 195 aa7.57□□□□□ -1.2
LIMCH1-205ENST00000503057 A0A096LNT2 108 aa7.56□□□□□ -1.2
LIMCH1-205ENST00000503057 C9orf116Q5BN46 136 aaPredicted RBP7.56□□□□□ -1.2
LIMCH1-205ENST00000503057 DHRS4-AS1Q9P1J3 65 aa7.56□□□□□ -1.2
LIMCH1-205ENST00000503057 LAMA3Q16787 3333 aa7.56□□□□□ -1.2
LIMCH1-205ENST00000503057 IL17DQ8TAD2 202 aa7.56□□□□□ -1.2
LIMCH1-205ENST00000503057 SMCPP49901 116 aaPredicted RBP7.55□□□□□ -1.2
LIMCH1-205ENST00000503057 NANOS2P60321 138 aaKnown RBP7.55□□□□□ -1.2
LIMCH1-205ENST00000503057 IGHV3OR16-9A0A0B4J2B5 98 aa7.55□□□□□ -1.2
LIMCH1-205ENST00000503057 Q9UF83 564 aa7.55□□□□□ -1.2
LIMCH1-205ENST00000503057 IGKV2-24A0A0C4DH68 120 aa7.55□□□□□ -1.2
LIMCH1-205ENST00000503057 B9D2Q9BPU9 175 aa7.55□□□□□ -1.2
LIMCH1-205ENST00000503057 CDIP1Q9H305 208 aa7.55□□□□□ -1.2
LIMCH1-205ENST00000503057 CCDC168Q8NDH2 2452 aa7.54□□□□□ -1.2
LIMCH1-205ENST00000503057 LINC00337Q8N6G1 96 aa7.54□□□□□ -1.2
LIMCH1-205ENST00000503057 F8WDY8 70 aa7.54□□□□□ -1.2
LIMCH1-205ENST00000503057 FAM19A5Q7Z5A7 132 aaPredicted RBP7.54□□□□□ -1.2
LIMCH1-205ENST00000503057 NDUFS5O43920 106 aa7.54□□□□□ -1.2
LIMCH1-205ENST00000503057 SERP2Q8N6R1 65 aa7.53□□□□□ -1.2
LIMCH1-205ENST00000503057 SBSPONQ8IVN8 264 aa7.53□□□□□ -1.2
LIMCH1-205ENST00000503057 IGKV2-28A0A075B6P5 120 aa7.53□□□□□ -1.2
LIMCH1-205ENST00000503057 IGKV2D-28P01615 120 aa7.53□□□□□ -1.2
LIMCH1-205ENST00000503057 RETNQ9HD89 108 aa7.53□□□□□ -1.2
LIMCH1-205ENST00000503057 USP17L23D6RBM5 183 aa7.53□□□□□ -1.2
LIMCH1-205ENST00000503057 PRR3P79522 188 aaKnown RBP7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms