RNA–Protein interactions for RNA: ENST00000501271.2

CLIP1-204, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,426 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-204ENST00000501271 F5H768 121 aa6.98□□□□□ -1.29
CLIP1-204ENST00000501271 RNF183Q96D59 192 aa6.98□□□□□ -1.29
CLIP1-204ENST00000501271 M0QXV9 152 aa6.98□□□□□ -1.29
CLIP1-204ENST00000501271 SCGB1A1P11684 91 aa6.98□□□□□ -1.29
CLIP1-204ENST00000501271 IFITM1P13164 125 aa6.98□□□□□ -1.29
CLIP1-204ENST00000501271 UNC79Q9P2D8 2635 aa6.97□□□□□ -1.29
CLIP1-204ENST00000501271 A0A0U1RRA0 63 aa6.97□□□□□ -1.29
CLIP1-204ENST00000501271 RPL13AP40429 203 aaKnown RBP6.97□□□□□ -1.29
CLIP1-204ENST00000501271 HILS1P60008 231 aa6.97□□□□□ -1.29
CLIP1-204ENST00000501271 OVOL2Q9BRP0 275 aa6.97□□□□□ -1.29
CLIP1-204ENST00000501271 TMEM243Q9BU79 118 aa6.97□□□□□ -1.29
CLIP1-204ENST00000501271 HELZ2Q9BYK8 2649 aaKnown RBP6.97□□□□□ -1.29
CLIP1-204ENST00000501271 UBE2L6O14933 153 aa6.97□□□□□ -1.29
CLIP1-204ENST00000501271 LINC00308Q8TCZ7 52 aa6.97□□□□□ -1.29
CLIP1-204ENST00000501271 TRBV6-4A0A1B0GX49 114 aa6.96□□□□□ -1.3
CLIP1-204ENST00000501271 CIRBPQ14011 172 aaKnown RBP6.96□□□□□ -1.3
CLIP1-204ENST00000501271 TRGV4A0A0C4DH28 118 aa6.96□□□□□ -1.3
CLIP1-204ENST00000501271 XGP55808 180 aa6.96□□□□□ -1.3
CLIP1-204ENST00000501271 SOSTDC1Q6X4U4 206 aa6.96□□□□□ -1.3
CLIP1-204ENST00000501271 CLEC2BQ92478 149 aa6.96□□□□□ -1.3
CLIP1-204ENST00000501271 TRBV10-2A0A0K0K1G8 114 aa6.95□□□□□ -1.3
CLIP1-204ENST00000501271 KRTAP10-3P60369 221 aa6.95□□□□□ -1.3
CLIP1-204ENST00000501271 PRIMA1Q86XR5 153 aa6.95□□□□□ -1.3
CLIP1-204ENST00000501271 NTN5Q8WTR8 489 aaPredicted RBP6.95□□□□□ -1.3
CLIP1-204ENST00000501271 SMR3AQ99954 134 aa6.95□□□□□ -1.3
CLIP1-204ENST00000501271 MT-ATP8P03928 68 aa6.95□□□□□ -1.3
CLIP1-204ENST00000501271 FHL2Q14192 279 aa6.95□□□□□ -1.3
CLIP1-204ENST00000501271 LINC01600Q96MT4 127 aa6.95□□□□□ -1.3
CLIP1-204ENST00000501271 GAGE6Q13070 117 aa6.94□□□□□ -1.3
CLIP1-204ENST00000501271 FASNP49327 2511 aaKnown RBP6.94□□□□□ -1.3
CLIP1-204ENST00000501271 FN1P02751 2386 aaKnown RBP6.94□□□□□ -1.3
CLIP1-204ENST00000501271 H7C423 109 aa6.93□□□□□ -1.3
CLIP1-204ENST00000501271 COX6CP09669 75 aa6.93□□□□□ -1.3
CLIP1-204ENST00000501271 MEIG1Q5JSS6 88 aa6.93□□□□□ -1.3
CLIP1-204ENST00000501271 GCN1Q92616 2671 aaKnown RBP6.93□□□□□ -1.3
CLIP1-204ENST00000501271 IGLV4-60A0A075B6I1 120 aa6.93□□□□□ -1.3
CLIP1-204ENST00000501271 TEX49A0A1B0GTD5 131 aa6.93□□□□□ -1.3
CLIP1-204ENST00000501271 LST1O00453 97 aa6.93□□□□□ -1.3
CLIP1-204ENST00000501271 CIDEAO60543 219 aa6.93□□□□□ -1.3
CLIP1-204ENST00000501271 VWFP04275 2813 aa6.93□□□□□ -1.3
CLIP1-204ENST00000501271 KMT2BQ9UMN6 2715 aaPredicted RBP6.93□□□□□ -1.3
CLIP1-204ENST00000501271 HIVEP2P31629 2446 aa6.92□□□□□ -1.3
CLIP1-204ENST00000501271 IGKV3OR2-268A0A0C4DH90 116 aa6.92□□□□□ -1.3
CLIP1-204ENST00000501271 TRBV6-8A0A0A6YYG3 113 aa6.92□□□□□ -1.3
CLIP1-204ENST00000501271 J3QKU1 62 aa6.92□□□□□ -1.3
CLIP1-204ENST00000501271 C2orf82Q6UX34 121 aa6.92□□□□□ -1.3
CLIP1-204ENST00000501271 DEFB130BP0DP73 79 aa6.91□□□□□ -1.3
CLIP1-204ENST00000501271 DEFB130AP0DP74 79 aa6.91□□□□□ -1.3
CLIP1-204ENST00000501271 HERV-K104P63124 156 aa6.91□□□□□ -1.3
CLIP1-204ENST00000501271 CRLF1O75462 422 aa6.91□□□□□ -1.3
CLIP1-204ENST00000501271 LINC00482Q8N8I6 264 aa6.91□□□□□ -1.3
CLIP1-204ENST00000501271 CHCHD5Q9BSY4 110 aa6.91□□□□□ -1.3
CLIP1-204ENST00000501271 NBEAL2Q6ZNJ1 2754 aa6.91□□□□□ -1.3
CLIP1-204ENST00000501271 H3BT86 120 aa6.9□□□□□ -1.3
CLIP1-204ENST00000501271 UBE2WQ96B02 151 aa6.9□□□□□ -1.3
CLIP1-204ENST00000501271 TMEM262E9PQX1 116 aa6.9□□□□□ -1.31
CLIP1-204ENST00000501271 COX7B2Q8TF08 81 aa6.9□□□□□ -1.31
CLIP1-204ENST00000501271 SHISA2Q6UWI4 295 aa6.89□□□□□ -1.31
CLIP1-204ENST00000501271 SPATA3Q8NHX4 192 aa6.89□□□□□ -1.31
CLIP1-204ENST00000501271 COPS9Q8WXC6 57 aa6.89□□□□□ -1.31
CLIP1-204ENST00000501271 TOMM7Q9P0U1 55 aa6.89□□□□□ -1.31
CLIP1-204ENST00000501271 IGHV3OR16-9A0A0B4J2B5 98 aa6.89□□□□□ -1.31
CLIP1-204ENST00000501271 LINC00612Q8N6U2 182 aa6.89□□□□□ -1.31
CLIP1-204ENST00000501271 KIR2DL5BQ8NHK3 375 aa6.89□□□□□ -1.31
CLIP1-204ENST00000501271 COX7A2LO14548 114 aa6.88□□□□□ -1.31
CLIP1-204ENST00000501271 X6R8D5 127 aa6.88□□□□□ -1.31
CLIP1-204ENST00000501271 GYPEP15421 78 aa6.87□□□□□ -1.31
CLIP1-204ENST00000501271 MIR7-3HGQ8N6C7 128 aa6.87□□□□□ -1.31
CLIP1-204ENST00000501271 PPDPFQ9H3Y8 114 aa6.87□□□□□ -1.31
CLIP1-204ENST00000501271 OTOGQ6ZRI0 2925 aa6.87□□□□□ -1.31
CLIP1-204ENST00000501271 TRAV8-4A0A0B4J246 113 aa6.87□□□□□ -1.31
CLIP1-204ENST00000501271 A0A087WZ39 114 aa6.86□□□□□ -1.31
CLIP1-204ENST00000501271 A0A1B0GV72 72 aa6.86□□□□□ -1.31
CLIP1-204ENST00000501271 LY6G6DO95868 133 aa6.86□□□□□ -1.31
CLIP1-204ENST00000501271 CKS1BP61024 79 aa6.86□□□□□ -1.31
CLIP1-204ENST00000501271 C5orf38Q86SI9 138 aa6.86□□□□□ -1.31
CLIP1-204ENST00000501271 TENM1Q9UKZ4 2725 aa6.86□□□□□ -1.31
CLIP1-204ENST00000501271 HECTD1Q9ULT8 2610 aa6.86□□□□□ -1.31
CLIP1-204ENST00000501271 LINC00959A0A1B0GUT2 108 aa6.86□□□□□ -1.31
CLIP1-204ENST00000501271 IGKV2-28A0A075B6P5 120 aa6.85□□□□□ -1.31
CLIP1-204ENST00000501271 A0A096LPF7 62 aa6.85□□□□□ -1.31
CLIP1-204ENST00000501271 IGKV2D-28P01615 120 aa6.85□□□□□ -1.31
CLIP1-204ENST00000501271 LINC00337Q8N6G1 96 aa6.85□□□□□ -1.31
CLIP1-204ENST00000501271 FAM218AQ96MZ4 157 aa6.85□□□□□ -1.31
CLIP1-204ENST00000501271 CITED1Q99966 193 aa6.85□□□□□ -1.31
CLIP1-204ENST00000501271 LINC00158P58513 81 aa6.84□□□□□ -1.31
CLIP1-204ENST00000501271 DEFB121Q5J5C9 76 aa6.84□□□□□ -1.31
CLIP1-204ENST00000501271 FAM222AQ5U5X8 452 aa6.84□□□□□ -1.31
CLIP1-204ENST00000501271 SND1-IT1Q9HBX3 110 aa6.84□□□□□ -1.31
CLIP1-204ENST00000501271 NSD1Q96L73 2696 aaPredicted RBP6.84□□□□□ -1.31
CLIP1-204ENST00000501271 CRPP02741 224 aa6.84□□□□□ -1.32
CLIP1-204ENST00000501271 CLPSL2Q6UWE3 100 aa6.84□□□□□ -1.32
CLIP1-204ENST00000501271 PRO0255Q9UI72 69 aa6.84□□□□□ -1.32
CLIP1-204ENST00000501271 TRAV13-2A0A0B4J235 113 aa6.83□□□□□ -1.32
CLIP1-204ENST00000501271 SMIM9A6NGZ8 99 aa6.83□□□□□ -1.32
CLIP1-204ENST00000501271 DEFB4AO15263 64 aa6.83□□□□□ -1.32
CLIP1-204ENST00000501271 XCL1P47992 114 aa6.83□□□□□ -1.32
CLIP1-204ENST00000501271 CCL18P55774 89 aa6.83□□□□□ -1.32
CLIP1-204ENST00000501271 C11orf68Q9H3H3 251 aaKnown RBP6.83□□□□□ -1.32
CLIP1-204ENST00000501271 IBA57-AS1B1ANH7 110 aa6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms