RNA–Protein interactions for RNA: ENST00000496622.1

SSBP1-213, Transcript of single stranded DNA binding protein 1, humanhuman

TSL 1 (best)

Gene SSBP1, Length 2,620 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP1-213ENST00000496622 TRAV12-3A0A0B4J271 114 aa4.5□□□□□ -1.69
SSBP1-213ENST00000496622 SLC25A20O43772 301 aa4.5□□□□□ -1.69
SSBP1-213ENST00000496622 SPINK13Q1W4C9 94 aa4.5□□□□□ -1.69
SSBP1-213ENST00000496622 C9orf47Q6ZRZ4 202 aa4.5□□□□□ -1.69
SSBP1-213ENST00000496622 C11orf68Q9H3H3 251 aaKnown RBP4.5□□□□□ -1.69
SSBP1-213ENST00000496622 TRBV6-1A0A0K0K1D8 114 aa4.5□□□□□ -1.69
SSBP1-213ENST00000496622 LINC01619G3V211 115 aa4.5□□□□□ -1.69
SSBP1-213ENST00000496622 LGALS9O00182 355 aa4.5□□□□□ -1.69
SSBP1-213ENST00000496622 ATOX1O00244 68 aa4.5□□□□□ -1.69
SSBP1-213ENST00000496622 TTTY13Q9BZ97 58 aa4.5□□□□□ -1.69
SSBP1-213ENST00000496622 TRBV25-1A0A075B6N4 114 aa4.49□□□□□ -1.69
SSBP1-213ENST00000496622 D6R8Y8 96 aa4.49□□□□□ -1.69
SSBP1-213ENST00000496622 M0R381 172 aa4.49□□□□□ -1.69
SSBP1-213ENST00000496622 DEFB131AP59861 70 aa4.49□□□□□ -1.69
SSBP1-213ENST00000496622 KRTAP10-3P60369 221 aa4.49□□□□□ -1.69
SSBP1-213ENST00000496622 KRTAP4-9Q9BYQ8 210 aa4.49□□□□□ -1.69
SSBP1-213ENST00000496622 GFRA4Q9GZZ7 299 aa4.49□□□□□ -1.69
SSBP1-213ENST00000496622 TEX49A0A1B0GTD5 131 aa4.49□□□□□ -1.69
SSBP1-213ENST00000496622 MYMXA0A1B0GTQ4 84 aa4.49□□□□□ -1.69
SSBP1-213ENST00000496622 UBE2D3P61077 147 aa4.49□□□□□ -1.69
SSBP1-213ENST00000496622 UBE2D2P62837 147 aa4.49□□□□□ -1.69
SSBP1-213ENST00000496622 LGALS9CQ6DKI2 356 aa4.49□□□□□ -1.69
SSBP1-213ENST00000496622 C6orf223Q8N319 242 aa4.49□□□□□ -1.69
SSBP1-213ENST00000496622 C4orf3Q8WVX3 66 aa4.49□□□□□ -1.69
SSBP1-213ENST00000496622 WFDC10AQ9H1F0 79 aa4.49□□□□□ -1.69
SSBP1-213ENST00000496622 LINC00474Q9P2X8 69 aa4.49□□□□□ -1.69
SSBP1-213ENST00000496622 K7EQG2 157 aa4.48□□□□□ -1.69
SSBP1-213ENST00000496622 NPYP01303 97 aa4.48□□□□□ -1.69
SSBP1-213ENST00000496622 COX8CQ7Z4L0 72 aa4.48□□□□□ -1.69
SSBP1-213ENST00000496622 ZNF747Q9BV97 191 aa4.48□□□□□ -1.69
SSBP1-213ENST00000496622 FCER1GP30273 86 aa4.48□□□□□ -1.69
SSBP1-213ENST00000496622 IFI27P40305 119 aaPredicted RBP4.48□□□□□ -1.69
SSBP1-213ENST00000496622 PAPPA-AS1Q5QFB9 102 aa4.48□□□□□ -1.69
SSBP1-213ENST00000496622 NDUFC2-KCTD14E9PQ53 114 aa4.47□□□□□ -1.69
SSBP1-213ENST00000496622 RBMY1A1P0DJD3 496 aaKnown RBP4.47□□□□□ -1.69
SSBP1-213ENST00000496622 RBMY1CP0DJD4 496 aa4.47□□□□□ -1.69
SSBP1-213ENST00000496622 S100A4P26447 101 aaKnown RBP4.47□□□□□ -1.69
SSBP1-213ENST00000496622 RIGQ13278 110 aa4.47□□□□□ -1.69
SSBP1-213ENST00000496622 RBMY1FQ15415 496 aaKnown RBP4.47□□□□□ -1.69
SSBP1-213ENST00000496622 MRPL51Q4U2R6 128 aaKnown RBP4.47□□□□□ -1.69
SSBP1-213ENST00000496622 SPANXN1Q5VSR9 72 aa4.47□□□□□ -1.69
SSBP1-213ENST00000496622 IGKV2D-26A0A0A0MRZ7 120 aa4.47□□□□□ -1.69
SSBP1-213ENST00000496622 A0A0J9YX75 114 aa4.47□□□□□ -1.69
SSBP1-213ENST00000496622 LINC01549A6NIU2 74 aa4.47□□□□□ -1.69
SSBP1-213ENST00000496622 FHL2Q14192 279 aa4.47□□□□□ -1.69
SSBP1-213ENST00000496622 DEFB114Q30KQ6 69 aa4.47□□□□□ -1.69
SSBP1-213ENST00000496622 SERP2Q8N6R1 65 aa4.47□□□□□ -1.69
SSBP1-213ENST00000496622 C14orf178Q8N769 122 aaPredicted RBP4.47□□□□□ -1.69
SSBP1-213ENST00000496622 DYNLRB2Q8TF09 96 aa4.47□□□□□ -1.69
SSBP1-213ENST00000496622 HIST1H4GQ99525 98 aa4.47□□□□□ -1.69
SSBP1-213ENST00000496622 TM2D3Q9BRN9 247 aa4.47□□□□□ -1.69
SSBP1-213ENST00000496622 NACAE9PAV3 2078 aa4.46□□□□□ -1.69
SSBP1-213ENST00000496622 MUC4Q99102 2169 aa4.46□□□□□ -1.69
SSBP1-213ENST00000496622 A0A0A0MQY5 61 aa4.46□□□□□ -1.69
SSBP1-213ENST00000496622 RBMY1BA6NDE4 496 aaKnown RBP4.46□□□□□ -1.69
SSBP1-213ENST00000496622 RBMY1EA6NEQ0 496 aaKnown RBP4.46□□□□□ -1.69
SSBP1-213ENST00000496622 TIMM17BO60830 172 aa4.46□□□□□ -1.69
SSBP1-213ENST00000496622 RBMY1DP0C7P1 496 aaKnown RBP4.46□□□□□ -1.69
SSBP1-213ENST00000496622 RNASE3P12724 160 aaKnown RBP4.46□□□□□ -1.69
SSBP1-213ENST00000496622 ZNF22P17026 224 aaPredicted RBP4.46□□□□□ -1.69
SSBP1-213ENST00000496622 FAM104BQ5XKR9 115 aa4.46□□□□□ -1.69
SSBP1-213ENST00000496622 RNF185Q96GF1 192 aa4.46□□□□□ -1.69
SSBP1-213ENST00000496622 IGHV3OR16-12A0A075B7B8 117 aa4.46□□□□□ -1.7
SSBP1-213ENST00000496622 TRAV21A0A0B4J279 112 aa4.46□□□□□ -1.7
SSBP1-213ENST00000496622 CKS2P33552 79 aa4.46□□□□□ -1.7
SSBP1-213ENST00000496622 PROK1P58294 105 aa4.46□□□□□ -1.7
SSBP1-213ENST00000496622 HIST1H4AP62805 103 aaKnown RBP4.46□□□□□ -1.7
SSBP1-213ENST00000496622 CACNG7P62955 275 aa4.46□□□□□ -1.7
SSBP1-213ENST00000496622 Q6ZSN1 163 aa4.46□□□□□ -1.7
SSBP1-213ENST00000496622 Q9H8V8 135 aa4.46□□□□□ -1.7
SSBP1-213ENST00000496622 KLLNB2CW77 178 aa4.45□□□□□ -1.7
SSBP1-213ENST00000496622 H3BMM0 161 aa4.45□□□□□ -1.7
SSBP1-213ENST00000496622 RBM3P98179 157 aaKnown RBP4.45□□□□□ -1.7
SSBP1-213ENST00000496622 LCE5AQ5TCM9 118 aa4.45□□□□□ -1.7
SSBP1-213ENST00000496622 UBE2WQ96B02 151 aa4.45□□□□□ -1.7
SSBP1-213ENST00000496622 TMEM243Q9BU79 118 aa4.45□□□□□ -1.7
SSBP1-213ENST00000496622 PHLDA3Q9Y5J5 127 aa4.45□□□□□ -1.7
SSBP1-213ENST00000496622 KMT2CQ8NEZ4 4911 aaKnown RBP4.45□□□□□ -1.7
SSBP1-213ENST00000496622 TRBV7-6A0A0J9YX20 115 aa4.45□□□□□ -1.7
SSBP1-213ENST00000496622 BEAN1Q3B7T3 259 aa4.45□□□□□ -1.7
SSBP1-213ENST00000496622 ODF3L2Q3SX64 289 aa4.45□□□□□ -1.7
SSBP1-213ENST00000496622 FAM74A4Q5TZK3 123 aa4.45□□□□□ -1.7
SSBP1-213ENST00000496622 PRSS3P2Q8NHM4 247 aa4.45□□□□□ -1.7
SSBP1-213ENST00000496622 XCL2Q9UBD3 114 aa4.45□□□□□ -1.7
SSBP1-213ENST00000496622 RPL18AQ02543 176 aaKnown RBP4.44□□□□□ -1.7
SSBP1-213ENST00000496622 S100A7L2Q5SY68 101 aa4.44□□□□□ -1.7
SSBP1-213ENST00000496622 C5orf38Q86SI9 138 aa4.44□□□□□ -1.7
SSBP1-213ENST00000496622 ORMDL3Q8N138 153 aa4.44□□□□□ -1.7
SSBP1-213ENST00000496622 MAP6D1Q9H9H5 199 aa4.44□□□□□ -1.7
SSBP1-213ENST00000496622 ANK2Q01484 3957 aa4.44□□□□□ -1.7
SSBP1-213ENST00000496622 TRBV7-3A0A075B6L6 115 aa4.44□□□□□ -1.7
SSBP1-213ENST00000496622 IGHV3-73A0A0B4J1V6 119 aa4.44□□□□□ -1.7
SSBP1-213ENST00000496622 CXCL5P42830 114 aa4.44□□□□□ -1.7
SSBP1-213ENST00000496622 KTN1-AS1Q86SY8 53 aa4.44□□□□□ -1.7
SSBP1-213ENST00000496622 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP4.44□□□□□ -1.7
SSBP1-213ENST00000496622 RPL39LQ96EH5 51 aaKnown RBP4.44□□□□□ -1.7
SSBP1-213ENST00000496622 CNFNQ9BYD5 112 aa4.44□□□□□ -1.7
SSBP1-213ENST00000496622 LAMTOR3Q9UHA4 124 aa4.44□□□□□ -1.7
SSBP1-213ENST00000496622 MEGF8Q7Z7M0 2845 aa4.44□□□□□ -1.7
SSBP1-213ENST00000496622 TGP01266 2768 aa4.44□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms