RNA–Protein interactions for RNA: ENST00000487245.5

HLA-C-208, Transcript of major histocompatibility complex, class I, C, humanhuman

Gene HLA-C, Length 1,880 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-C-208ENST00000487245 H7C423 109 aa18.5■□□□□ 0.55
HLA-C-208ENST00000487245 COPS9Q8WXC6 57 aa18.5■□□□□ 0.55
HLA-C-208ENST00000487245 PPDPFQ9H3Y8 114 aa18.5■□□□□ 0.55
HLA-C-208ENST00000487245 RPL13AP40429 203 aaKnown RBP18.5■□□□□ 0.55
HLA-C-208ENST00000487245 TMEM243Q9BU79 118 aa18.5■□□□□ 0.55
HLA-C-208ENST00000487245 Q9H8V8 135 aa18.5■□□□□ 0.55
HLA-C-208ENST00000487245 TRGV4A0A0C4DH28 118 aa18.48■□□□□ 0.55
HLA-C-208ENST00000487245 F5H768 121 aa18.48■□□□□ 0.55
HLA-C-208ENST00000487245 UBE2L6O14933 153 aa18.48■□□□□ 0.55
HLA-C-208ENST00000487245 LINC00308Q8TCZ7 52 aa18.48■□□□□ 0.55
HLA-C-208ENST00000487245 NF1P21359 2839 aa18.47■□□□□ 0.55
HLA-C-208ENST00000487245 NPC2P61916 151 aa18.47■□□□□ 0.55
HLA-C-208ENST00000487245 ZNF625Q96I27 306 aaPredicted RBP18.47■□□□□ 0.55
HLA-C-208ENST00000487245 H3BT86 120 aa18.46■□□□□ 0.54
HLA-C-208ENST00000487245 XGP55808 180 aa18.45■□□□□ 0.54
HLA-C-208ENST00000487245 HERV-K104P63124 156 aa18.45■□□□□ 0.54
HLA-C-208ENST00000487245 HECTD1Q9ULT8 2610 aa18.45■□□□□ 0.54
HLA-C-208ENST00000487245 TRAV13-1A0A0B4J241 112 aa18.44■□□□□ 0.54
HLA-C-208ENST00000487245 LST1O00453 97 aa18.44■□□□□ 0.54
HLA-C-208ENST00000487245 NTN5Q8WTR8 489 aaPredicted RBP18.44■□□□□ 0.54
HLA-C-208ENST00000487245 MT-ATP8P03928 68 aa18.43■□□□□ 0.54
HLA-C-208ENST00000487245 FHL2Q14192 279 aa18.43■□□□□ 0.54
HLA-C-208ENST00000487245 DAND5Q8N907 189 aa18.43■□□□□ 0.54
HLA-C-208ENST00000487245 KIR2DL5BQ8NHK3 375 aa18.43■□□□□ 0.54
HLA-C-208ENST00000487245 ITPR2Q14571 2701 aa18.42■□□□□ 0.54
HLA-C-208ENST00000487245 HIVEP2P31629 2446 aa18.41■□□□□ 0.54
HLA-C-208ENST00000487245 A0A1B0GV72 72 aa18.39■□□□□ 0.54
HLA-C-208ENST00000487245 C9orf66Q5T8R8 295 aa18.39■□□□□ 0.54
HLA-C-208ENST00000487245 C2orf82Q6UX34 121 aa18.39■□□□□ 0.54
HLA-C-208ENST00000487245 MTORP42345 2549 aa18.39■□□□□ 0.53
HLA-C-208ENST00000487245 LOC100131303A0A0U1RQF7 123 aa18.39■□□□□ 0.53
HLA-C-208ENST00000487245 SMIM9A6NGZ8 99 aa18.39■□□□□ 0.53
HLA-C-208ENST00000487245 PRIMA1Q86XR5 153 aa18.39■□□□□ 0.53
HLA-C-208ENST00000487245 LINC00612Q8N6U2 182 aa18.38■□□□□ 0.53
HLA-C-208ENST00000487245 UBE2WQ96B02 151 aa18.38■□□□□ 0.53
HLA-C-208ENST00000487245 SOSTDC1Q6X4U4 206 aa18.37■□□□□ 0.53
HLA-C-208ENST00000487245 CLEC2BQ92478 149 aa18.37■□□□□ 0.53
HLA-C-208ENST00000487245 CRLF1O75462 422 aa18.36■□□□□ 0.53
HLA-C-208ENST00000487245 TRBV6-8A0A0A6YYG3 113 aa18.35■□□□□ 0.53
HLA-C-208ENST00000487245 MEIG1Q5JSS6 88 aa18.35■□□□□ 0.53
HLA-C-208ENST00000487245 SHISA2Q6UWI4 295 aa18.35■□□□□ 0.53
HLA-C-208ENST00000487245 DEFB121Q5J5C9 76 aa18.33■□□□□ 0.53
HLA-C-208ENST00000487245 TEX49A0A1B0GTD5 131 aa18.33■□□□□ 0.52
HLA-C-208ENST00000487245 INAFM1C9JVW0 142 aa18.33■□□□□ 0.52
HLA-C-208ENST00000487245 SETD2Q9BYW2 2564 aaPredicted RBP18.32■□□□□ 0.52
HLA-C-208ENST00000487245 COX7A2LO14548 114 aa18.32■□□□□ 0.52
HLA-C-208ENST00000487245 SETXQ7Z333 2677 aaKnown RBP18.32■□□□□ 0.52
HLA-C-208ENST00000487245 CKS1BP61024 79 aa18.31■□□□□ 0.52
HLA-C-208ENST00000487245 CUBNO60494 3623 aa18.31■□□□□ 0.52
HLA-C-208ENST00000487245 GAGE6Q13070 117 aa18.31■□□□□ 0.52
HLA-C-208ENST00000487245 DEFB130BP0DP73 79 aa18.3■□□□□ 0.52
HLA-C-208ENST00000487245 DEFB130AP0DP74 79 aa18.3■□□□□ 0.52
HLA-C-208ENST00000487245 CITED1Q99966 193 aa18.3■□□□□ 0.52
HLA-C-208ENST00000487245 X6R8D5 127 aa18.3■□□□□ 0.52
HLA-C-208ENST00000487245 TRAV8-4A0A0B4J246 113 aa18.29■□□□□ 0.52
HLA-C-208ENST00000487245 COX7B2Q8TF08 81 aa18.29■□□□□ 0.52
HLA-C-208ENST00000487245 CHCHD5Q9BSY4 110 aa18.28■□□□□ 0.52
HLA-C-208ENST00000487245 A0A0U1RRA0 63 aa18.27■□□□□ 0.52
HLA-C-208ENST00000487245 FAM222AQ5U5X8 452 aa18.26■□□□□ 0.51
HLA-C-208ENST00000487245 JMJD1CQ15652 2540 aa18.26■□□□□ 0.51
HLA-C-208ENST00000487245 FAM240AA0A1B0GVK7 77 aa18.24■□□□□ 0.51
HLA-C-208ENST00000487245 LYRM9A8MSI8 78 aa18.24■□□□□ 0.51
HLA-C-208ENST00000487245 IGHV3OR16-9A0A0B4J2B5 98 aa18.24■□□□□ 0.51
HLA-C-208ENST00000487245 NOTCH3Q9UM47 2321 aa18.24■□□□□ 0.51
HLA-C-208ENST00000487245 IGLV4-60A0A075B6I1 120 aa18.23■□□□□ 0.51
HLA-C-208ENST00000487245 PRO0255Q9UI72 69 aa18.23■□□□□ 0.51
HLA-C-208ENST00000487245 TRACP01848 142 aa18.22■□□□□ 0.51
HLA-C-208ENST00000487245 GYPEP15421 78 aa18.22■□□□□ 0.51
HLA-C-208ENST00000487245 APOC4P55056 127 aa18.22■□□□□ 0.51
HLA-C-208ENST00000487245 MRPL23Q16540 153 aaKnown RBP18.22■□□□□ 0.51
HLA-C-208ENST00000487245 A0A087WZ39 114 aa18.2■□□□□ 0.5
HLA-C-208ENST00000487245 TRAV13-2A0A0B4J235 113 aa18.2■□□□□ 0.5
HLA-C-208ENST00000487245 NOTCH2Q04721 2471 aa18.19■□□□□ 0.5
HLA-C-208ENST00000487245 SNCGO76070 127 aa18.19■□□□□ 0.5
HLA-C-208ENST00000487245 Q6Q795 121 aa18.19■□□□□ 0.5
HLA-C-208ENST00000487245 SPATA3Q8NHX4 192 aa18.17■□□□□ 0.5
HLA-C-208ENST00000487245 A0A1B0GUV1 79 aa18.16■□□□□ 0.5
HLA-C-208ENST00000487245 IBA57-AS1B1ANH7 110 aa18.16■□□□□ 0.5
HLA-C-208ENST00000487245 RPL28P46779 137 aaKnown RBP18.16■□□□□ 0.5
HLA-C-208ENST00000487245 MIR7-3HGQ8N6C7 128 aa18.16■□□□□ 0.5
HLA-C-208ENST00000487245 IGKV3OR2-268A0A0C4DH90 116 aa18.15■□□□□ 0.5
HLA-C-208ENST00000487245 PAX4O43316 350 aa18.14■□□□□ 0.49
HLA-C-208ENST00000487245 LINC00959A0A1B0GUT2 108 aa18.14■□□□□ 0.49
HLA-C-208ENST00000487245 CRPP02741 224 aa18.14■□□□□ 0.49
HLA-C-208ENST00000487245 TOMM7Q9P0U1 55 aa18.14■□□□□ 0.49
HLA-C-208ENST00000487245 GAGE2BQ13066 116 aa18.13■□□□□ 0.49
HLA-C-208ENST00000487245 GAGE2EQ4V326 116 aa18.13■□□□□ 0.49
HLA-C-208ENST00000487245 C15orf53Q8NAA6 179 aa18.13■□□□□ 0.49
HLA-C-208ENST00000487245 GAGE2DQ9UEU5 116 aa18.13■□□□□ 0.49
HLA-C-208ENST00000487245 SND1-IT1Q9HBX3 110 aa18.12■□□□□ 0.49
HLA-C-208ENST00000487245 NIPBLQ6KC79 2804 aaeCLIP18.12■□□□□ 0.49
HLA-C-208ENST00000487245 DEFB135Q30KP9 77 aa18.12■□□□□ 0.49
HLA-C-208ENST00000487245 LINC01561Q8N1V8 128 aa18.12■□□□□ 0.49
HLA-C-208ENST00000487245 IGKV2-28A0A075B6P5 120 aa18.11■□□□□ 0.49
HLA-C-208ENST00000487245 IGKV2D-28P01615 120 aa18.11■□□□□ 0.49
HLA-C-208ENST00000487245 WFDC9Q8NEX5 89 aa18.11■□□□□ 0.49
HLA-C-208ENST00000487245 SS18Q15532 418 aa18.1■□□□□ 0.49
HLA-C-208ENST00000487245 ACYP1P07311 99 aa18.09■□□□□ 0.49
HLA-C-208ENST00000487245 LINC00158P58513 81 aa18.09■□□□□ 0.49
HLA-C-208ENST00000487245 LINC00337Q8N6G1 96 aa18.09■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 91.9 ms