RNA–Protein interactions for RNA: ENST00000486828.6

PDLIM7-207, Transcript of PDZ and LIM domain 7, humanhuman

TSL 1 (best)

Gene PDLIM7, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM7-207ENST00000486828 TRAV13-1A0A0B4J241 112 aa12.74□□□□□ -0.37
PDLIM7-207ENST00000486828 INSL3P51460 131 aa12.74□□□□□ -0.37
PDLIM7-207ENST00000486828 Q1RN00 199 aa12.74□□□□□ -0.37
PDLIM7-207ENST00000486828 ATRQ13535 2644 aa12.74□□□□□ -0.37
PDLIM7-207ENST00000486828 TRGV4A0A0C4DH28 118 aa12.73□□□□□ -0.37
PDLIM7-207ENST00000486828 LOC100131303A0A0U1RQF7 123 aa12.73□□□□□ -0.37
PDLIM7-207ENST00000486828 UBE2L6O14933 153 aa12.73□□□□□ -0.37
PDLIM7-207ENST00000486828 PF4P02776 101 aa12.73□□□□□ -0.37
PDLIM7-207ENST00000486828 IFITM1P13164 125 aa12.73□□□□□ -0.37
PDLIM7-207ENST00000486828 FOXI1Q12951 378 aa12.73□□□□□ -0.37
PDLIM7-207ENST00000486828 SMIM1B2RUZ4 78 aa12.72□□□□□ -0.37
PDLIM7-207ENST00000486828 H7C423 109 aa12.72□□□□□ -0.37
PDLIM7-207ENST00000486828 SHISA2Q6UWI4 295 aa12.72□□□□□ -0.37
PDLIM7-207ENST00000486828 TRBV30A0A0K0K1B3 111 aa12.72□□□□□ -0.37
PDLIM7-207ENST00000486828 LINC00482Q8N8I6 264 aa12.72□□□□□ -0.37
PDLIM7-207ENST00000486828 NPC2P61916 151 aa12.71□□□□□ -0.37
PDLIM7-207ENST00000486828 GAGE12HA6NDE8 117 aa12.7□□□□□ -0.38
PDLIM7-207ENST00000486828 CIRBPQ14011 172 aaKnown RBP12.7□□□□□ -0.38
PDLIM7-207ENST00000486828 FHL2Q14192 279 aa12.7□□□□□ -0.38
PDLIM7-207ENST00000486828 TEN1Q86WV5 123 aa12.7□□□□□ -0.38
PDLIM7-207ENST00000486828 SPATA25Q9BR10 227 aa12.7□□□□□ -0.38
PDLIM7-207ENST00000486828 Q9H8V8 135 aa12.7□□□□□ -0.38
PDLIM7-207ENST00000486828 F5H768 121 aa12.69□□□□□ -0.38
PDLIM7-207ENST00000486828 TRIAP1O43715 76 aa12.68□□□□□ -0.38
PDLIM7-207ENST00000486828 M0QXV9 152 aa12.68□□□□□ -0.38
PDLIM7-207ENST00000486828 ATXN8Q156A1 80 aa12.68□□□□□ -0.38
PDLIM7-207ENST00000486828 DAND5Q8N907 189 aa12.68□□□□□ -0.38
PDLIM7-207ENST00000486828 PPDPFLQ8WWR9 84 aa12.67□□□□□ -0.38
PDLIM7-207ENST00000486828 ICOSQ9Y6W8 199 aa12.67□□□□□ -0.38
PDLIM7-207ENST00000486828 SLC25A20O43772 301 aa12.66□□□□□ -0.38
PDLIM7-207ENST00000486828 KIR2DL5BQ8NHK3 375 aa12.66□□□□□ -0.38
PDLIM7-207ENST00000486828 ZNF625Q96I27 306 aaPredicted RBP12.66□□□□□ -0.38
PDLIM7-207ENST00000486828 SIGMAR1Q99720 223 aa12.66□□□□□ -0.38
PDLIM7-207ENST00000486828 TRBV6-8A0A0A6YYG3 113 aa12.66□□□□□ -0.38
PDLIM7-207ENST00000486828 C9JAW5 83 aa12.66□□□□□ -0.38
PDLIM7-207ENST00000486828 CARD19Q96LW7 228 aa12.66□□□□□ -0.38
PDLIM7-207ENST00000486828 LINC00612Q8N6U2 182 aa12.65□□□□□ -0.38
PDLIM7-207ENST00000486828 LINC00308Q8TCZ7 52 aa12.65□□□□□ -0.38
PDLIM7-207ENST00000486828 NOTCH3Q9UM47 2321 aa12.65□□□□□ -0.38
PDLIM7-207ENST00000486828 TRAV26-1A0A087WT03 109 aa12.64□□□□□ -0.39
PDLIM7-207ENST00000486828 GAGE6Q13070 117 aa12.64□□□□□ -0.39
PDLIM7-207ENST00000486828 ANKRD29Q8N6D5 301 aa12.64□□□□□ -0.39
PDLIM7-207ENST00000486828 HERV-K104P63124 156 aa12.64□□□□□ -0.39
PDLIM7-207ENST00000486828 LINC01620Q4KN68 170 aa12.64□□□□□ -0.39
PDLIM7-207ENST00000486828 PRIMA1Q86XR5 153 aa12.64□□□□□ -0.39
PDLIM7-207ENST00000486828 COX6CP09669 75 aa12.62□□□□□ -0.39
PDLIM7-207ENST00000486828 DEFB130BP0DP73 79 aa12.62□□□□□ -0.39
PDLIM7-207ENST00000486828 DEFB130AP0DP74 79 aa12.62□□□□□ -0.39
PDLIM7-207ENST00000486828 RPL13AP40429 203 aaKnown RBP12.62□□□□□ -0.39
PDLIM7-207ENST00000486828 COPS9Q8WXC6 57 aa12.62□□□□□ -0.39
PDLIM7-207ENST00000486828 IGLV4-60A0A075B6I1 120 aa12.61□□□□□ -0.39
PDLIM7-207ENST00000486828 MEIG1Q5JSS6 88 aa12.61□□□□□ -0.39
PDLIM7-207ENST00000486828 LINC01600Q96MT4 127 aa12.61□□□□□ -0.39
PDLIM7-207ENST00000486828 CHCHD5Q9BSY4 110 aa12.61□□□□□ -0.39
PDLIM7-207ENST00000486828 X6R8D5 127 aa12.61□□□□□ -0.39
PDLIM7-207ENST00000486828 A0A0U1RRA0 63 aa12.6□□□□□ -0.39
PDLIM7-207ENST00000486828 SMIM9A6NGZ8 99 aa12.6□□□□□ -0.39
PDLIM7-207ENST00000486828 C9orf66Q5T8R8 295 aa12.6□□□□□ -0.39
PDLIM7-207ENST00000486828 TENM1Q9UKZ4 2725 aa12.59□□□□□ -0.39
PDLIM7-207ENST00000486828 SOSTDC1Q6X4U4 206 aa12.59□□□□□ -0.39
PDLIM7-207ENST00000486828 TRBV10-2A0A0K0K1G8 114 aa12.58□□□□□ -0.39
PDLIM7-207ENST00000486828 SPATA3Q8NHX4 192 aa12.58□□□□□ -0.4
PDLIM7-207ENST00000486828 PPDPFQ9H3Y8 114 aa12.58□□□□□ -0.4
PDLIM7-207ENST00000486828 IGKV3OR2-268A0A0C4DH90 116 aa12.57□□□□□ -0.4
PDLIM7-207ENST00000486828 COX7B2Q8TF08 81 aa12.57□□□□□ -0.4
PDLIM7-207ENST00000486828 CDIP1Q9H305 208 aa12.57□□□□□ -0.4
PDLIM7-207ENST00000486828 GYPEP15421 78 aa12.56□□□□□ -0.4
PDLIM7-207ENST00000486828 CKS1BP61024 79 aa12.56□□□□□ -0.4
PDLIM7-207ENST00000486828 FBN1P35555 2871 aaKnown RBP12.56□□□□□ -0.4
PDLIM7-207ENST00000486828 IGHV3OR16-9A0A0B4J2B5 98 aa12.56□□□□□ -0.4
PDLIM7-207ENST00000486828 COL6A5A8TX70 2615 aa12.55□□□□□ -0.4
PDLIM7-207ENST00000486828 LST1O00453 97 aa12.55□□□□□ -0.4
PDLIM7-207ENST00000486828 CLEC2BQ92478 149 aa12.55□□□□□ -0.4
PDLIM7-207ENST00000486828 PRO0255Q9UI72 69 aa12.54□□□□□ -0.4
PDLIM7-207ENST00000486828 NTN5Q8WTR8 489 aaPredicted RBP12.53□□□□□ -0.4
PDLIM7-207ENST00000486828 A0A087WZ39 114 aa12.52□□□□□ -0.4
PDLIM7-207ENST00000486828 LYRM9A8MSI8 78 aa12.52□□□□□ -0.4
PDLIM7-207ENST00000486828 FAM222AQ5U5X8 452 aa12.52□□□□□ -0.4
PDLIM7-207ENST00000486828 LINC00959A0A1B0GUT2 108 aa12.52□□□□□ -0.41
PDLIM7-207ENST00000486828 H3BT86 120 aa12.52□□□□□ -0.41
PDLIM7-207ENST00000486828 TOMM7Q9P0U1 55 aa12.52□□□□□ -0.41
PDLIM7-207ENST00000486828 KRTAP24-1Q3LI83 254 aa12.51□□□□□ -0.41
PDLIM7-207ENST00000486828 C2orf82Q6UX34 121 aa12.51□□□□□ -0.41
PDLIM7-207ENST00000486828 A0A1B0GUV1 79 aa12.5□□□□□ -0.41
PDLIM7-207ENST00000486828 STAB1Q9NY15 2570 aa12.5□□□□□ -0.41
PDLIM7-207ENST00000486828 TMEM262E9PQX1 116 aa12.5□□□□□ -0.41
PDLIM7-207ENST00000486828 APOC4P55056 127 aa12.49□□□□□ -0.41
PDLIM7-207ENST00000486828 DEFB135Q30KP9 77 aa12.49□□□□□ -0.41
PDLIM7-207ENST00000486828 COX7A2LO14548 114 aa12.49□□□□□ -0.41
PDLIM7-207ENST00000486828 PAX4O43316 350 aa12.49□□□□□ -0.41
PDLIM7-207ENST00000486828 C5orf38Q86SI9 138 aa12.49□□□□□ -0.41
PDLIM7-207ENST00000486828 MIR7-3HGQ8N6C7 128 aa12.48□□□□□ -0.41
PDLIM7-207ENST00000486828 UBE2WQ96B02 151 aa12.48□□□□□ -0.41
PDLIM7-207ENST00000486828 TEX49A0A1B0GTD5 131 aa12.47□□□□□ -0.41
PDLIM7-207ENST00000486828 CITED1Q99966 193 aa12.47□□□□□ -0.41
PDLIM7-207ENST00000486828 XGP55808 180 aa12.47□□□□□ -0.41
PDLIM7-207ENST00000486828 IBA57-AS1B1ANH7 110 aa12.46□□□□□ -0.42
PDLIM7-207ENST00000486828 SS18Q15532 418 aa12.46□□□□□ -0.42
PDLIM7-207ENST00000486828 A0A096LPF7 62 aa12.45□□□□□ -0.42
PDLIM7-207ENST00000486828 IGHV4-28A0A0C4DH34 117 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 127.7 ms