RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 LST1O00453 97 aa8.07□□□□□ -1.12
HDAC6-228ENST00000486227 SPAG11BQ08648 103 aa8.07□□□□□ -1.12
HDAC6-228ENST00000486227 C9orf85Q96MD7 179 aa8.07□□□□□ -1.12
HDAC6-228ENST00000486227 F8P00451 2351 aa8.07□□□□□ -1.12
HDAC6-228ENST00000486227 DSCR8Q96T75 97 aa8.07□□□□□ -1.12
HDAC6-228ENST00000486227 CDKN2A-AS1Q9UH64 79 aa8.07□□□□□ -1.12
HDAC6-228ENST00000486227 CFAP54Q96N23 3096 aa8.07□□□□□ -1.12
HDAC6-228ENST00000486227 hADV29S1A0JD25 119 aa8.07□□□□□ -1.12
HDAC6-228ENST00000486227 ODF3L2Q3SX64 289 aa8.07□□□□□ -1.12
HDAC6-228ENST00000486227 WDFY4Q6ZS81 3184 aa8.06□□□□□ -1.12
HDAC6-228ENST00000486227 RBM3P98179 157 aaKnown RBP8.06□□□□□ -1.12
HDAC6-228ENST00000486227 JMJD7-PLA2G4BH0Y9G9 81 aa8.06□□□□□ -1.12
HDAC6-228ENST00000486227 LECT2O14960 151 aa8.06□□□□□ -1.12
HDAC6-228ENST00000486227 BRI3O95415 125 aa8.06□□□□□ -1.12
HDAC6-228ENST00000486227 IGHV4-28A0A0C4DH34 117 aa8.05□□□□□ -1.12
HDAC6-228ENST00000486227 IGIPA6NJ69 53 aa8.05□□□□□ -1.12
HDAC6-228ENST00000486227 CXCL5P42830 114 aa8.05□□□□□ -1.12
HDAC6-228ENST00000486227 TIMM17BO60830 172 aa8.05□□□□□ -1.12
HDAC6-228ENST00000486227 H7C423 109 aa8.05□□□□□ -1.12
HDAC6-228ENST00000486227 PYGO1Q9Y3Y4 419 aa8.05□□□□□ -1.12
HDAC6-228ENST00000486227 CENPEQ02224 2701 aa8.05□□□□□ -1.12
HDAC6-228ENST00000486227 HECTD1Q9ULT8 2610 aa8.04□□□□□ -1.12
HDAC6-228ENST00000486227 LINC00308Q8TCZ7 52 aa8.04□□□□□ -1.12
HDAC6-228ENST00000486227 MGAQ8IWI9 3026 aa8.04□□□□□ -1.12
HDAC6-228ENST00000486227 TMEM258P61165 79 aa8.04□□□□□ -1.12
HDAC6-228ENST00000486227 MIR7-3HGQ8N6C7 128 aa8.04□□□□□ -1.12
HDAC6-228ENST00000486227 M0QXV9 152 aa8.04□□□□□ -1.12
HDAC6-228ENST00000486227 IGHV4-30-4P0DP06 118 aa8.04□□□□□ -1.12
HDAC6-228ENST00000486227 C16orf95Q9H693 158 aa8.04□□□□□ -1.12
HDAC6-228ENST00000486227 AGRNO00468 2067 aa8.04□□□□□ -1.12
HDAC6-228ENST00000486227 LINC01546A6NGU7 62 aa8.04□□□□□ -1.12
HDAC6-228ENST00000486227 TSHBP01222 138 aa8.04□□□□□ -1.12
HDAC6-228ENST00000486227 C14orf132Q9NPU4 83 aa8.04□□□□□ -1.12
HDAC6-228ENST00000486227 PRO0461Q9UI25 63 aa8.04□□□□□ -1.12
HDAC6-228ENST00000486227 ZNF292O60281 2723 aa8.03□□□□□ -1.12
HDAC6-228ENST00000486227 ZNF580Q9UK33 172 aa8.03□□□□□ -1.12
HDAC6-228ENST00000486227 IGLV4-69A0A075B6H9 119 aa8.03□□□□□ -1.12
HDAC6-228ENST00000486227 LINC00269Q8N2A0 174 aa8.03□□□□□ -1.12
HDAC6-228ENST00000486227 TRBV6-4A0A1B0GX49 114 aa8.02□□□□□ -1.13
HDAC6-228ENST00000486227 COX7CP15954 63 aa8.02□□□□□ -1.13
HDAC6-228ENST00000486227 REG3AQ06141 175 aa8.02□□□□□ -1.13
HDAC6-228ENST00000486227 SDIM1Q6ZPB5 146 aa8.02□□□□□ -1.13
HDAC6-228ENST00000486227 TRBV6-8A0A0A6YYG3 113 aa8.01□□□□□ -1.13
HDAC6-228ENST00000486227 LOC100131303A0A0U1RQF7 123 aa8.01□□□□□ -1.13
HDAC6-228ENST00000486227 UBE2AP49459 152 aa8.01□□□□□ -1.13
HDAC6-228ENST00000486227 IGLV1-51P01701 117 aa8□□□□□ -1.13
HDAC6-228ENST00000486227 TSPEAR-AS2P59090 65 aa8□□□□□ -1.13
HDAC6-228ENST00000486227 SMCPP49901 116 aaPredicted RBP8□□□□□ -1.13
HDAC6-228ENST00000486227 IGKV2-24A0A0C4DH68 120 aa7.99□□□□□ -1.13
HDAC6-228ENST00000486227 A8MZ25 164 aa7.99□□□□□ -1.13
HDAC6-228ENST00000486227 KPRPQ5T749 579 aaPredicted RBP7.99□□□□□ -1.13
HDAC6-228ENST00000486227 SERP2Q8N6R1 65 aa7.99□□□□□ -1.13
HDAC6-228ENST00000486227 DEFB105AQ8NG35 78 aa7.99□□□□□ -1.13
HDAC6-228ENST00000486227 HIGD2BQ4VC39 106 aa7.99□□□□□ -1.13
HDAC6-228ENST00000486227 ATP5EP2Q5VTU8 51 aa7.99□□□□□ -1.13
HDAC6-228ENST00000486227 TMEM256-PLSCR3K7ERE1 68 aa7.98□□□□□ -1.13
HDAC6-228ENST00000486227 LY6G6CO95867 125 aa7.98□□□□□ -1.13
HDAC6-228ENST00000486227 MRPS36P82909 103 aaKnown RBP7.98□□□□□ -1.13
HDAC6-228ENST00000486227 CHCHD10Q8WYQ3 142 aaPredicted RBP7.97□□□□□ -1.13
HDAC6-228ENST00000486227 LINC00694P0DN24 101 aa7.97□□□□□ -1.13
HDAC6-228ENST00000486227 A0A0J9YWU9 116 aa7.97□□□□□ -1.13
HDAC6-228ENST00000486227 C1orf158Q8N1D5 194 aa7.97□□□□□ -1.13
HDAC6-228ENST00000486227 TRAV23DV6A0A075B6W5 121 aa7.97□□□□□ -1.13
HDAC6-228ENST00000486227 NCR3O14931 201 aa7.97□□□□□ -1.13
HDAC6-228ENST00000486227 C20orf197Q8N268 126 aa7.97□□□□□ -1.13
HDAC6-228ENST00000486227 LINC00526Q96FQ7 95 aa7.97□□□□□ -1.13
HDAC6-228ENST00000486227 H3BQ85 93 aa7.96□□□□□ -1.13
HDAC6-228ENST00000486227 C4orf48Q5BLP8 95 aa7.96□□□□□ -1.13
HDAC6-228ENST00000486227 UBE2D4Q9Y2X8 147 aa7.96□□□□□ -1.14
HDAC6-228ENST00000486227 USP17L23D6RBM5 183 aa7.95□□□□□ -1.14
HDAC6-228ENST00000486227 PIK3CD-AS1Q5SR53 167 aa7.95□□□□□ -1.14
HDAC6-228ENST00000486227 SZT2Q5T011 3432 aa7.95□□□□□ -1.14
HDAC6-228ENST00000486227 NANOS2P60321 138 aaKnown RBP7.95□□□□□ -1.14
HDAC6-228ENST00000486227 FAM236DA0A1B0GTK5 79 aa7.95□□□□□ -1.14
HDAC6-228ENST00000486227 NDUFC2O95298 119 aa7.95□□□□□ -1.14
HDAC6-228ENST00000486227 FAM236CP0DP71 79 aa7.95□□□□□ -1.14
HDAC6-228ENST00000486227 VPS13AQ96RL7 3174 aa7.94□□□□□ -1.14
HDAC6-228ENST00000486227 M0R2N4 97 aa7.94□□□□□ -1.14
HDAC6-228ENST00000486227 PDE6GP18545 87 aa7.94□□□□□ -1.14
HDAC6-228ENST00000486227 UPK3BQ9BT76 320 aa7.94□□□□□ -1.14
HDAC6-228ENST00000486227 POM121L12Q8N7R1 296 aa7.93□□□□□ -1.14
HDAC6-228ENST00000486227 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.93□□□□□ -1.14
HDAC6-228ENST00000486227 SBSPONQ8IVN8 264 aa7.93□□□□□ -1.14
HDAC6-228ENST00000486227 COL27A1Q8IZC6 1860 aaPredicted RBP7.93□□□□□ -1.14
HDAC6-228ENST00000486227 NUPR2A6NF83 97 aa7.93□□□□□ -1.14
HDAC6-228ENST00000486227 TRBV7-7A0A0K0K1E9 115 aa7.93□□□□□ -1.14
HDAC6-228ENST00000486227 LELP1Q5T871 98 aa7.93□□□□□ -1.14
HDAC6-228ENST00000486227 Q6JHZ5 121 aa7.92□□□□□ -1.14
HDAC6-228ENST00000486227 IBA57-AS1B1ANH7 110 aa7.92□□□□□ -1.14
HDAC6-228ENST00000486227 RETNQ9HD89 108 aa7.91□□□□□ -1.14
HDAC6-228ENST00000486227 FUSP35637 526 aaKnown RBP eCLIP7.91□□□□□ -1.14
HDAC6-228ENST00000486227 Q8N2B8 174 aa7.91□□□□□ -1.14
HDAC6-228ENST00000486227 DIRC1Q969H9 104 aa7.91□□□□□ -1.14
HDAC6-228ENST00000486227 ADAMTSL4-AS1Q5T5F5 129 aa7.9□□□□□ -1.15
HDAC6-228ENST00000486227 Q6ZSN1 163 aa7.9□□□□□ -1.15
HDAC6-228ENST00000486227 CDC42SE2Q9NRR3 84 aa7.9□□□□□ -1.15
HDAC6-228ENST00000486227 SYCNQ0VAF6 134 aa7.9□□□□□ -1.15
HDAC6-228ENST00000486227 ENHOQ6UWT2 76 aa7.9□□□□□ -1.15
HDAC6-228ENST00000486227 B9D2Q9BPU9 175 aa7.89□□□□□ -1.15
HDAC6-228ENST00000486227 LINC00959A0A1B0GUT2 108 aa7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms