RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 TMEM243Q9BU79 118 aa6.32□□□□□ -1.4
SYNE1-217ENST00000466159 C9JAW5 83 aa6.32□□□□□ -1.4
SYNE1-217ENST00000466159 PF4P02776 101 aa6.32□□□□□ -1.4
SYNE1-217ENST00000466159 CARD19Q96LW7 228 aa6.32□□□□□ -1.4
SYNE1-217ENST00000466159 HECTD1Q9ULT8 2610 aa6.32□□□□□ -1.4
SYNE1-217ENST00000466159 NOTCH2Q04721 2471 aa6.32□□□□□ -1.4
SYNE1-217ENST00000466159 TRAV26-1A0A087WT03 109 aa6.31□□□□□ -1.4
SYNE1-217ENST00000466159 TIMM17BO60830 172 aa6.31□□□□□ -1.4
SYNE1-217ENST00000466159 FHL2Q14192 279 aa6.31□□□□□ -1.4
SYNE1-217ENST00000466159 TEN1Q86WV5 123 aa6.31□□□□□ -1.4
SYNE1-217ENST00000466159 VWFP04275 2813 aa6.31□□□□□ -1.4
SYNE1-217ENST00000466159 TRBV30A0A0K0K1B3 111 aa6.31□□□□□ -1.4
SYNE1-217ENST00000466159 F5H768 121 aa6.31□□□□□ -1.4
SYNE1-217ENST00000466159 SLC25A20O43772 301 aa6.31□□□□□ -1.4
SYNE1-217ENST00000466159 LY6G6DO95868 133 aa6.31□□□□□ -1.4
SYNE1-217ENST00000466159 DEFB130BP0DP73 79 aa6.3□□□□□ -1.4
SYNE1-217ENST00000466159 DEFB130AP0DP74 79 aa6.3□□□□□ -1.4
SYNE1-217ENST00000466159 GAGE6Q13070 117 aa6.3□□□□□ -1.4
SYNE1-217ENST00000466159 ANKRD29Q8N6D5 301 aa6.3□□□□□ -1.4
SYNE1-217ENST00000466159 LINC00482Q8N8I6 264 aa6.3□□□□□ -1.4
SYNE1-217ENST00000466159 SPATA3Q8NHX4 192 aa6.3□□□□□ -1.4
SYNE1-217ENST00000466159 NBEAL2Q6ZNJ1 2754 aa6.3□□□□□ -1.4
SYNE1-217ENST00000466159 GCN1Q92616 2671 aaKnown RBP6.3□□□□□ -1.4
SYNE1-217ENST00000466159 CIRBPQ14011 172 aaKnown RBP6.3□□□□□ -1.4
SYNE1-217ENST00000466159 ICOSQ9Y6W8 199 aa6.3□□□□□ -1.4
SYNE1-217ENST00000466159 IGKV3OR2-268A0A0C4DH90 116 aa6.29□□□□□ -1.4
SYNE1-217ENST00000466159 CRLF1O75462 422 aa6.29□□□□□ -1.4
SYNE1-217ENST00000466159 IFITM1P13164 125 aa6.29□□□□□ -1.4
SYNE1-217ENST00000466159 ATXN8Q156A1 80 aa6.29□□□□□ -1.4
SYNE1-217ENST00000466159 PPDPFLQ8WWR9 84 aa6.29□□□□□ -1.4
SYNE1-217ENST00000466159 OTOGQ6ZRI0 2925 aa6.29□□□□□ -1.4
SYNE1-217ENST00000466159 IGLV4-60A0A075B6I1 120 aa6.29□□□□□ -1.4
SYNE1-217ENST00000466159 PRIMA1Q86XR5 153 aa6.29□□□□□ -1.4
SYNE1-217ENST00000466159 LINC00308Q8TCZ7 52 aa6.29□□□□□ -1.4
SYNE1-217ENST00000466159 RNF183Q96D59 192 aa6.29□□□□□ -1.4
SYNE1-217ENST00000466159 TRBV6-8A0A0A6YYG3 113 aa6.29□□□□□ -1.4
SYNE1-217ENST00000466159 RPL13AP40429 203 aaKnown RBP6.29□□□□□ -1.4
SYNE1-217ENST00000466159 LINC01620Q4KN68 170 aa6.29□□□□□ -1.4
SYNE1-217ENST00000466159 CDIP1Q9H305 208 aa6.29□□□□□ -1.4
SYNE1-217ENST00000466159 MEIG1Q5JSS6 88 aa6.28□□□□□ -1.4
SYNE1-217ENST00000466159 SOSTDC1Q6X4U4 206 aa6.28□□□□□ -1.4
SYNE1-217ENST00000466159 H7C423 109 aa6.28□□□□□ -1.4
SYNE1-217ENST00000466159 CLEC2BQ92478 149 aa6.28□□□□□ -1.4
SYNE1-217ENST00000466159 CHCHD5Q9BSY4 110 aa6.28□□□□□ -1.4
SYNE1-217ENST00000466159 INAFM1C9JVW0 142 aa6.27□□□□□ -1.41
SYNE1-217ENST00000466159 KIR2DL5BQ8NHK3 375 aa6.27□□□□□ -1.41
SYNE1-217ENST00000466159 X6R8D5 127 aa6.27□□□□□ -1.41
SYNE1-217ENST00000466159 COX6CP09669 75 aa6.26□□□□□ -1.41
SYNE1-217ENST00000466159 NTN5Q8WTR8 489 aaPredicted RBP6.26□□□□□ -1.41
SYNE1-217ENST00000466159 TOMM7Q9P0U1 55 aa6.26□□□□□ -1.41
SYNE1-217ENST00000466159 TENM1Q9UKZ4 2725 aa6.25□□□□□ -1.41
SYNE1-217ENST00000466159 TRBV10-2A0A0K0K1G8 114 aa6.25□□□□□ -1.41
SYNE1-217ENST00000466159 M0QXV9 152 aa6.25□□□□□ -1.41
SYNE1-217ENST00000466159 MT-ATP8P03928 68 aa6.25□□□□□ -1.41
SYNE1-217ENST00000466159 GYPEP15421 78 aa6.25□□□□□ -1.41
SYNE1-217ENST00000466159 LINC00612Q8N6U2 182 aa6.25□□□□□ -1.41
SYNE1-217ENST00000466159 HERV-K104P63124 156 aa6.25□□□□□ -1.41
SYNE1-217ENST00000466159 COX7B2Q8TF08 81 aa6.25□□□□□ -1.41
SYNE1-217ENST00000466159 NSD1Q96L73 2696 aaPredicted RBP6.24□□□□□ -1.41
SYNE1-217ENST00000466159 A0A096LPF7 62 aa6.24□□□□□ -1.41
SYNE1-217ENST00000466159 IGHV3OR16-9A0A0B4J2B5 98 aa6.24□□□□□ -1.41
SYNE1-217ENST00000466159 TEX49A0A1B0GTD5 131 aa6.24□□□□□ -1.41
SYNE1-217ENST00000466159 LST1O00453 97 aa6.24□□□□□ -1.41
SYNE1-217ENST00000466159 DEFB4AO15263 64 aa6.24□□□□□ -1.41
SYNE1-217ENST00000466159 XGP55808 180 aa6.24□□□□□ -1.41
SYNE1-217ENST00000466159 C5orf38Q86SI9 138 aa6.24□□□□□ -1.41
SYNE1-217ENST00000466159 FAM222AQ5U5X8 452 aa6.23□□□□□ -1.41
SYNE1-217ENST00000466159 C2orf82Q6UX34 121 aa6.23□□□□□ -1.41
SYNE1-217ENST00000466159 TRRAPQ9Y4A5 3859 aa6.23□□□□□ -1.41
SYNE1-217ENST00000466159 TMEM262E9PQX1 116 aa6.23□□□□□ -1.41
SYNE1-217ENST00000466159 DEFB135Q30KP9 77 aa6.23□□□□□ -1.41
SYNE1-217ENST00000466159 C9orf66Q5T8R8 295 aa6.23□□□□□ -1.41
SYNE1-217ENST00000466159 LINC01600Q96MT4 127 aa6.23□□□□□ -1.41
SYNE1-217ENST00000466159 LINC00959A0A1B0GUT2 108 aa6.22□□□□□ -1.41
SYNE1-217ENST00000466159 MIR7-3HGQ8N6C7 128 aa6.22□□□□□ -1.41
SYNE1-217ENST00000466159 COPS9Q8WXC6 57 aa6.22□□□□□ -1.41
SYNE1-217ENST00000466159 SMIM9A6NGZ8 99 aa6.22□□□□□ -1.41
SYNE1-217ENST00000466159 SHISA2Q6UWI4 295 aa6.22□□□□□ -1.41
SYNE1-217ENST00000466159 PRO0255Q9UI72 69 aa6.22□□□□□ -1.41
SYNE1-217ENST00000466159 A0A087WZ39 114 aa6.21□□□□□ -1.41
SYNE1-217ENST00000466159 CLPSL2Q6UWE3 100 aa6.21□□□□□ -1.41
SYNE1-217ENST00000466159 ATRQ13535 2644 aa6.21□□□□□ -1.42
SYNE1-217ENST00000466159 HIVEP1P15822 2718 aa6.2□□□□□ -1.42
SYNE1-217ENST00000466159 H3BT86 120 aa6.2□□□□□ -1.42
SYNE1-217ENST00000466159 PAX4O43316 350 aa6.2□□□□□ -1.42
SYNE1-217ENST00000466159 XCL1P47992 114 aa6.2□□□□□ -1.42
SYNE1-217ENST00000466159 LINC00158P58513 81 aa6.2□□□□□ -1.42
SYNE1-217ENST00000466159 UBE2WQ96B02 151 aa6.2□□□□□ -1.42
SYNE1-217ENST00000466159 COX7A2LO14548 114 aa6.2□□□□□ -1.42
SYNE1-217ENST00000466159 C11orf68Q9H3H3 251 aaKnown RBP6.2□□□□□ -1.42
SYNE1-217ENST00000466159 A0A1B0GUV1 79 aa6.19□□□□□ -1.42
SYNE1-217ENST00000466159 PFN2P35080 140 aa6.19□□□□□ -1.42
SYNE1-217ENST00000466159 IGKV2-28A0A075B6P5 120 aa6.19□□□□□ -1.42
SYNE1-217ENST00000466159 IGHV4-28A0A0C4DH34 117 aa6.19□□□□□ -1.42
SYNE1-217ENST00000466159 LYRM9A8MSI8 78 aa6.19□□□□□ -1.42
SYNE1-217ENST00000466159 IGKV2D-28P01615 120 aa6.19□□□□□ -1.42
SYNE1-217ENST00000466159 LINC00337Q8N6G1 96 aa6.19□□□□□ -1.42
SYNE1-217ENST00000466159 SND1-IT1Q9HBX3 110 aa6.19□□□□□ -1.42
SYNE1-217ENST00000466159 TEP1Q99973 2627 aaKnown RBP6.19□□□□□ -1.42
SYNE1-217ENST00000466159 Q8N3U1 123 aa6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms