RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 C9orf66Q5T8R8 295 aa10.62□□□□□ -0.71
LDLR-202ENST00000455727 TRBV6-8A0A0A6YYG3 113 aa10.62□□□□□ -0.71
LDLR-202ENST00000455727 CRLF1O75462 422 aa10.62□□□□□ -0.71
LDLR-202ENST00000455727 SCGB1A1P11684 91 aa10.61□□□□□ -0.71
LDLR-202ENST00000455727 Q9H8V8 135 aa10.61□□□□□ -0.71
LDLR-202ENST00000455727 INAFM1C9JVW0 142 aa10.61□□□□□ -0.71
LDLR-202ENST00000455727 H7C2G1 150 aa10.59□□□□□ -0.71
LDLR-202ENST00000455727 M0QXV9 152 aa10.59□□□□□ -0.71
LDLR-202ENST00000455727 Q1RN00 199 aa10.59□□□□□ -0.71
LDLR-202ENST00000455727 ZNF625Q96I27 306 aaPredicted RBP10.59□□□□□ -0.71
LDLR-202ENST00000455727 X6R8D5 127 aa10.59□□□□□ -0.71
LDLR-202ENST00000455727 C2CD3Q4AC94 2353 aa10.59□□□□□ -0.71
LDLR-202ENST00000455727 HERV-K104P63124 156 aa10.59□□□□□ -0.71
LDLR-202ENST00000455727 FOXI1Q12951 378 aa10.59□□□□□ -0.71
LDLR-202ENST00000455727 COPS9Q8WXC6 57 aa10.58□□□□□ -0.72
LDLR-202ENST00000455727 OTOGQ6ZRI0 2925 aa10.58□□□□□ -0.72
LDLR-202ENST00000455727 DEFB130BP0DP73 79 aa10.58□□□□□ -0.72
LDLR-202ENST00000455727 DEFB130AP0DP74 79 aa10.58□□□□□ -0.72
LDLR-202ENST00000455727 TEN1Q86WV5 123 aa10.58□□□□□ -0.72
LDLR-202ENST00000455727 GAGE6Q13070 117 aa10.57□□□□□ -0.72
LDLR-202ENST00000455727 PPDPFQ9H3Y8 114 aa10.57□□□□□ -0.72
LDLR-202ENST00000455727 HECTD1Q9ULT8 2610 aa10.57□□□□□ -0.72
LDLR-202ENST00000455727 FN1P02751 2386 aaKnown RBP10.57□□□□□ -0.72
LDLR-202ENST00000455727 ATXN8Q156A1 80 aa10.57□□□□□ -0.72
LDLR-202ENST00000455727 LINC00308Q8TCZ7 52 aa10.57□□□□□ -0.72
LDLR-202ENST00000455727 TRIAP1O43715 76 aa10.56□□□□□ -0.72
LDLR-202ENST00000455727 NPC2P61916 151 aa10.56□□□□□ -0.72
LDLR-202ENST00000455727 PRIMA1Q86XR5 153 aa10.56□□□□□ -0.72
LDLR-202ENST00000455727 DAND5Q8N907 189 aa10.56□□□□□ -0.72
LDLR-202ENST00000455727 LINC01600Q96MT4 127 aa10.56□□□□□ -0.72
LDLR-202ENST00000455727 CHCHD5Q9BSY4 110 aa10.56□□□□□ -0.72
LDLR-202ENST00000455727 ICOSQ9Y6W8 199 aa10.56□□□□□ -0.72
LDLR-202ENST00000455727 IGLV4-60A0A075B6I1 120 aa10.55□□□□□ -0.72
LDLR-202ENST00000455727 PPDPFLQ8WWR9 84 aa10.55□□□□□ -0.72
LDLR-202ENST00000455727 NSD1Q96L73 2696 aaPredicted RBP10.55□□□□□ -0.72
LDLR-202ENST00000455727 LYRM9A8MSI8 78 aa10.55□□□□□ -0.72
LDLR-202ENST00000455727 SLC25A20O43772 301 aa10.55□□□□□ -0.72
LDLR-202ENST00000455727 COX6CP09669 75 aa10.55□□□□□ -0.72
LDLR-202ENST00000455727 SPATA3Q8NHX4 192 aa10.55□□□□□ -0.72
LDLR-202ENST00000455727 CITED1Q99966 193 aa10.54□□□□□ -0.72
LDLR-202ENST00000455727 PRO0255Q9UI72 69 aa10.54□□□□□ -0.72
LDLR-202ENST00000455727 C9JAW5 83 aa10.53□□□□□ -0.72
LDLR-202ENST00000455727 GYPEP15421 78 aa10.53□□□□□ -0.72
LDLR-202ENST00000455727 IGHV3OR16-9A0A0B4J2B5 98 aa10.53□□□□□ -0.72
LDLR-202ENST00000455727 LINC01620Q4KN68 170 aa10.53□□□□□ -0.72
LDLR-202ENST00000455727 APOC4P55056 127 aa10.52□□□□□ -0.72
LDLR-202ENST00000455727 MEIG1Q5JSS6 88 aa10.52□□□□□ -0.72
LDLR-202ENST00000455727 A0A1B0GUV1 79 aa10.52□□□□□ -0.73
LDLR-202ENST00000455727 RPL13AP40429 203 aaKnown RBP10.52□□□□□ -0.73
LDLR-202ENST00000455727 COX7B2Q8TF08 81 aa10.52□□□□□ -0.73
LDLR-202ENST00000455727 CARD19Q96LW7 228 aa10.52□□□□□ -0.73
LDLR-202ENST00000455727 NOTCH2Q04721 2471 aa10.51□□□□□ -0.73
LDLR-202ENST00000455727 VWFP04275 2813 aa10.51□□□□□ -0.73
LDLR-202ENST00000455727 A0A087WZ39 114 aa10.51□□□□□ -0.73
LDLR-202ENST00000455727 FAM222AQ5U5X8 452 aa10.51□□□□□ -0.73
LDLR-202ENST00000455727 SOSTDC1Q6X4U4 206 aa10.51□□□□□ -0.73
LDLR-202ENST00000455727 ANKRD29Q8N6D5 301 aa10.5□□□□□ -0.73
LDLR-202ENST00000455727 CDIP1Q9H305 208 aa10.5□□□□□ -0.73
LDLR-202ENST00000455727 TRBV10-2A0A0K0K1G8 114 aa10.49□□□□□ -0.73
LDLR-202ENST00000455727 A0A0U1RRA0 63 aa10.49□□□□□ -0.73
LDLR-202ENST00000455727 LINC00959A0A1B0GUT2 108 aa10.49□□□□□ -0.73
LDLR-202ENST00000455727 WFDC9Q8NEX5 89 aa10.49□□□□□ -0.73
LDLR-202ENST00000455727 IGKV3OR2-268A0A0C4DH90 116 aa10.48□□□□□ -0.73
LDLR-202ENST00000455727 DEFB135Q30KP9 77 aa10.48□□□□□ -0.73
LDLR-202ENST00000455727 PAX4O43316 350 aa10.47□□□□□ -0.73
LDLR-202ENST00000455727 LST1O00453 97 aa10.47□□□□□ -0.73
LDLR-202ENST00000455727 WIPF1O43516 503 aa10.47□□□□□ -0.73
LDLR-202ENST00000455727 SHISA2Q6UWI4 295 aa10.46□□□□□ -0.74
LDLR-202ENST00000455727 IGHV4-28A0A0C4DH34 117 aa10.45□□□□□ -0.74
LDLR-202ENST00000455727 TMEM262E9PQX1 116 aa10.45□□□□□ -0.74
LDLR-202ENST00000455727 MIFP14174 115 aa10.45□□□□□ -0.74
LDLR-202ENST00000455727 TOMM7Q9P0U1 55 aa10.45□□□□□ -0.74
LDLR-202ENST00000455727 TENM1Q9UKZ4 2725 aa10.45□□□□□ -0.74
LDLR-202ENST00000455727 HIVEP1P15822 2718 aa10.45□□□□□ -0.74
LDLR-202ENST00000455727 H3BT86 120 aa10.45□□□□□ -0.74
LDLR-202ENST00000455727 SS18Q15532 418 aa10.45□□□□□ -0.74
LDLR-202ENST00000455727 LINC01561Q8N1V8 128 aa10.45□□□□□ -0.74
LDLR-202ENST00000455727 NBEAL2Q6ZNJ1 2754 aa10.44□□□□□ -0.74
LDLR-202ENST00000455727 CLEC2BQ92478 149 aa10.44□□□□□ -0.74
LDLR-202ENST00000455727 A0A1B0GV72 72 aa10.44□□□□□ -0.74
LDLR-202ENST00000455727 IBA57-AS1B1ANH7 110 aa10.44□□□□□ -0.74
LDLR-202ENST00000455727 C5orf38Q86SI9 138 aa10.44□□□□□ -0.74
LDLR-202ENST00000455727 Q8NAQ8 132 aa10.44□□□□□ -0.74
LDLR-202ENST00000455727 DAD1P61803 113 aa10.43□□□□□ -0.74
LDLR-202ENST00000455727 MIR7-3HGQ8N6C7 128 aa10.43□□□□□ -0.74
LDLR-202ENST00000455727 TRAV26-1A0A087WT03 109 aa10.42□□□□□ -0.74
LDLR-202ENST00000455727 COX7A2LO14548 114 aa10.42□□□□□ -0.74
LDLR-202ENST00000455727 MT-ATP8P03928 68 aa10.42□□□□□ -0.74
LDLR-202ENST00000455727 XGP55808 180 aa10.42□□□□□ -0.74
LDLR-202ENST00000455727 C2orf82Q6UX34 121 aa10.42□□□□□ -0.74
LDLR-202ENST00000455727 NTN5Q8WTR8 489 aaPredicted RBP10.42□□□□□ -0.74
LDLR-202ENST00000455727 TEP1Q99973 2627 aaKnown RBP10.42□□□□□ -0.74
LDLR-202ENST00000455727 TRAV13-2A0A0B4J235 113 aa10.41□□□□□ -0.74
LDLR-202ENST00000455727 DEFB4AO15263 64 aa10.41□□□□□ -0.74
LDLR-202ENST00000455727 ATP5G1P05496 136 aa10.41□□□□□ -0.74
LDLR-202ENST00000455727 A0A096LPF7 62 aa10.4□□□□□ -0.74
LDLR-202ENST00000455727 LINC00158P58513 81 aa10.4□□□□□ -0.74
LDLR-202ENST00000455727 SPART-AS1P0CW21 52 aa10.4□□□□□ -0.74
LDLR-202ENST00000455727 XCL1P47992 114 aa10.4□□□□□ -0.74
LDLR-202ENST00000455727 CKS1BP61024 79 aa10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms