RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 GAGE4Q13068 117 aa9.69□□□□□ -0.86
COL6A3-207ENST00000433762 GAGE5Q13069 117 aa9.69□□□□□ -0.86
COL6A3-207ENST00000433762 CSNK1G2-AS1Q8NCQ2 148 aa9.69□□□□□ -0.86
COL6A3-207ENST00000433762 MYO9AB2RTY4 2548 aa9.69□□□□□ -0.86
COL6A3-207ENST00000433762 TRAV13-1A0A0B4J241 112 aa9.68□□□□□ -0.86
COL6A3-207ENST00000433762 TEX49A0A1B0GTD5 131 aa9.68□□□□□ -0.86
COL6A3-207ENST00000433762 LINC01006Q8NI28 216 aa9.68□□□□□ -0.86
COL6A3-207ENST00000433762 TEX15Q9BXT5 2789 aa9.68□□□□□ -0.86
COL6A3-207ENST00000433762 SNCGO76070 127 aa9.68□□□□□ -0.86
COL6A3-207ENST00000433762 TRACP01848 142 aa9.68□□□□□ -0.86
COL6A3-207ENST00000433762 NPC2P61916 151 aa9.68□□□□□ -0.86
COL6A3-207ENST00000433762 A0A1W2PRX2 142 aa9.67□□□□□ -0.86
COL6A3-207ENST00000433762 CLEC2BQ92478 149 aa9.67□□□□□ -0.86
COL6A3-207ENST00000433762 MEIG1Q5JSS6 88 aa9.67□□□□□ -0.86
COL6A3-207ENST00000433762 TRGV2A0A075B6R0 118 aa9.66□□□□□ -0.86
COL6A3-207ENST00000433762 NDUFA7O95182 113 aa9.66□□□□□ -0.86
COL6A3-207ENST00000433762 SOSTDC1Q6X4U4 206 aa9.66□□□□□ -0.86
COL6A3-207ENST00000433762 DAND5Q8N907 189 aa9.66□□□□□ -0.86
COL6A3-207ENST00000433762 TRAV13-2A0A0B4J235 113 aa9.66□□□□□ -0.86
COL6A3-207ENST00000433762 ACYP1P07311 99 aa9.66□□□□□ -0.86
COL6A3-207ENST00000433762 ITPR3Q14573 2671 aa9.65□□□□□ -0.86
COL6A3-207ENST00000433762 KRTAP1-1Q07627 177 aa9.65□□□□□ -0.87
COL6A3-207ENST00000433762 GAGE2BQ13066 116 aa9.65□□□□□ -0.87
COL6A3-207ENST00000433762 GAGE2EQ4V326 116 aa9.65□□□□□ -0.87
COL6A3-207ENST00000433762 GAGE2DQ9UEU5 116 aa9.65□□□□□ -0.87
COL6A3-207ENST00000433762 COX7B2Q8TF08 81 aa9.64□□□□□ -0.87
COL6A3-207ENST00000433762 TRBV6-8A0A0A6YYG3 113 aa9.64□□□□□ -0.87
COL6A3-207ENST00000433762 TRGV4A0A0C4DH28 118 aa9.64□□□□□ -0.87
COL6A3-207ENST00000433762 GAGE7O76087 117 aa9.64□□□□□ -0.87
COL6A3-207ENST00000433762 GAGE12FP0CL80 117 aa9.64□□□□□ -0.87
COL6A3-207ENST00000433762 GAGE12GP0CL81 117 aa9.64□□□□□ -0.87
COL6A3-207ENST00000433762 GAGE12IP0CL82 117 aa9.64□□□□□ -0.87
COL6A3-207ENST00000433762 LINC00612Q8N6U2 182 aa9.64□□□□□ -0.87
COL6A3-207ENST00000433762 KIR2DL5BQ8NHK3 375 aa9.64□□□□□ -0.87
COL6A3-207ENST00000433762 TRAV26-1A0A087WT03 109 aa9.63□□□□□ -0.87
COL6A3-207ENST00000433762 RPL28P46779 137 aaKnown RBP9.63□□□□□ -0.87
COL6A3-207ENST00000433762 FHL2Q14192 279 aa9.63□□□□□ -0.87
COL6A3-207ENST00000433762 HIST2H2BDQ6DRA6 164 aa9.63□□□□□ -0.87
COL6A3-207ENST00000433762 C11orf44Q8N8P7 122 aa9.63□□□□□ -0.87
COL6A3-207ENST00000433762 AKAP9Q99996 3911 aa9.62□□□□□ -0.87
COL6A3-207ENST00000433762 IGHV3OR16-9A0A0B4J2B5 98 aa9.61□□□□□ -0.87
COL6A3-207ENST00000433762 LINC01561Q8N1V8 128 aa9.61□□□□□ -0.87
COL6A3-207ENST00000433762 A0A087WZ39 114 aa9.61□□□□□ -0.87
COL6A3-207ENST00000433762 IBA57-AS1B1ANH7 110 aa9.61□□□□□ -0.87
COL6A3-207ENST00000433762 ANAPC13Q9BS18 74 aa9.61□□□□□ -0.87
COL6A3-207ENST00000433762 HILS1P60008 231 aa9.6□□□□□ -0.87
COL6A3-207ENST00000433762 C15orf53Q8NAA6 179 aa9.6□□□□□ -0.87
COL6A3-207ENST00000433762 FLNAP21333 2647 aaKnown RBP9.6□□□□□ -0.87
COL6A3-207ENST00000433762 NOTCH2Q04721 2471 aa9.6□□□□□ -0.87
COL6A3-207ENST00000433762 RPL35AP18077 110 aaKnown RBP9.6□□□□□ -0.87
COL6A3-207ENST00000433762 CRPP02741 224 aa9.59□□□□□ -0.87
COL6A3-207ENST00000433762 SMIM9A6NGZ8 99 aa9.59□□□□□ -0.87
COL6A3-207ENST00000433762 LOC100131303A0A0U1RQF7 123 aa9.58□□□□□ -0.88
COL6A3-207ENST00000433762 A0A1B0GUV1 79 aa9.58□□□□□ -0.88
COL6A3-207ENST00000433762 TRBV7-7A0A0K0K1E9 115 aa9.58□□□□□ -0.88
COL6A3-207ENST00000433762 GAGE6Q13070 117 aa9.58□□□□□ -0.88
COL6A3-207ENST00000433762 IMUPQ9GZP8 106 aa9.58□□□□□ -0.88
COL6A3-207ENST00000433762 NDUFV3P56181 108 aaKnown RBP9.57□□□□□ -0.88
COL6A3-207ENST00000433762 WFDC10AQ9H1F0 79 aa9.57□□□□□ -0.88
COL6A3-207ENST00000433762 WNK1Q9H4A3 2382 aa9.57□□□□□ -0.88
COL6A3-207ENST00000433762 A0A0U1RRA0 63 aa9.57□□□□□ -0.88
COL6A3-207ENST00000433762 CRLF1O75462 422 aa9.57□□□□□ -0.88
COL6A3-207ENST00000433762 MIR7-3HGQ8N6C7 128 aa9.57□□□□□ -0.88
COL6A3-207ENST00000433762 CHCHD5Q9BSY4 110 aa9.57□□□□□ -0.88
COL6A3-207ENST00000433762 SND1-IT1Q9HBX3 110 aa9.57□□□□□ -0.88
COL6A3-207ENST00000433762 TLN2Q9Y4G6 2542 aa9.56□□□□□ -0.88
COL6A3-207ENST00000433762 H0YGX0 51 aa9.56□□□□□ -0.88
COL6A3-207ENST00000433762 INAFM2P0DMQ5 153 aa9.56□□□□□ -0.88
COL6A3-207ENST00000433762 TTC32Q5I0X7 151 aa9.56□□□□□ -0.88
COL6A3-207ENST00000433762 ACANP16112 2415 aa9.56□□□□□ -0.88
COL6A3-207ENST00000433762 IGLV4-60A0A075B6I1 120 aa9.56□□□□□ -0.88
COL6A3-207ENST00000433762 SDIM1Q6ZPB5 146 aa9.56□□□□□ -0.88
COL6A3-207ENST00000433762 LINC00959A0A1B0GUT2 108 aa9.55□□□□□ -0.88
COL6A3-207ENST00000433762 BAALC-AS2P0C853 105 aa9.55□□□□□ -0.88
COL6A3-207ENST00000433762 IGKV2-28A0A075B6P5 120 aa9.54□□□□□ -0.88
COL6A3-207ENST00000433762 IGKV2D-28P01615 120 aa9.54□□□□□ -0.88
COL6A3-207ENST00000433762 NHLRC4P0CG21 123 aaPredicted RBP9.54□□□□□ -0.88
COL6A3-207ENST00000433762 LINC00337Q8N6G1 96 aa9.53□□□□□ -0.88
COL6A3-207ENST00000433762 ZNF469Q96JG9 3925 aaPredicted RBP9.53□□□□□ -0.88
COL6A3-207ENST00000433762 Q8IZM0 81 aa9.53□□□□□ -0.88
COL6A3-207ENST00000433762 CCL18P55774 89 aa9.52□□□□□ -0.88
COL6A3-207ENST00000433762 LINC00158P58513 81 aa9.52□□□□□ -0.88
COL6A3-207ENST00000433762 SS18Q15532 418 aa9.52□□□□□ -0.88
COL6A3-207ENST00000433762 SMR3AQ99954 134 aa9.52□□□□□ -0.88
COL6A3-207ENST00000433762 FLNBO75369 2602 aaKnown RBP9.52□□□□□ -0.89
COL6A3-207ENST00000433762 LY6G6DO95868 133 aa9.52□□□□□ -0.89
COL6A3-207ENST00000433762 LINC00482Q8N8I6 264 aa9.52□□□□□ -0.89
COL6A3-207ENST00000433762 TOMM7Q9P0U1 55 aa9.52□□□□□ -0.89
COL6A3-207ENST00000433762 PRO0255Q9UI72 69 aa9.52□□□□□ -0.89
COL6A3-207ENST00000433762 SONP18583 2426 aaKnown RBP9.51□□□□□ -0.89
COL6A3-207ENST00000433762 LYRM9A8MSI8 78 aa9.51□□□□□ -0.89
COL6A3-207ENST00000433762 LINC00643Q86TS7 51 aa9.51□□□□□ -0.89
COL6A3-207ENST00000433762 FAM218AQ96MZ4 157 aa9.51□□□□□ -0.89
COL6A3-207ENST00000433762 C22orf24Q9Y442 160 aa9.51□□□□□ -0.89
COL6A3-207ENST00000433762 MALP21145 153 aa9.5□□□□□ -0.89
COL6A3-207ENST00000433762 BAHCC1Q9P281 2608 aa9.5□□□□□ -0.89
COL6A3-207ENST00000433762 GYPEP15421 78 aa9.5□□□□□ -0.89
COL6A3-207ENST00000433762 CXCL5P42830 114 aa9.5□□□□□ -0.89
COL6A3-207ENST00000433762 X6R8D5 127 aa9.5□□□□□ -0.89
COL6A3-207ENST00000433762 SMIM11BQ8TCY0 68 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms