RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 C15orf56Q8N910 161 aa8.12□□□□□ -1.11
USP40-205ENST00000430158 TRAV13-1A0A0B4J241 112 aa8.11□□□□□ -1.11
USP40-205ENST00000430158 PRSS1P07477 247 aa8.11□□□□□ -1.11
USP40-205ENST00000430158 XCL1P47992 114 aa8.11□□□□□ -1.11
USP40-205ENST00000430158 SS18Q15532 418 aa8.11□□□□□ -1.11
USP40-205ENST00000430158 PDZD11Q5EBL8 140 aa8.11□□□□□ -1.11
USP40-205ENST00000430158 RYR1P21817 5038 aa8.11□□□□□ -1.11
USP40-205ENST00000430158 KIAA1109Q2LD37 5005 aa8.11□□□□□ -1.11
USP40-205ENST00000430158 APOBP04114 4563 aaKnown RBP8.1□□□□□ -1.11
USP40-205ENST00000430158 IGHV3OR16-9A0A0B4J2B5 98 aa8.1□□□□□ -1.11
USP40-205ENST00000430158 LINC01549A6NIU2 74 aa8.1□□□□□ -1.11
USP40-205ENST00000430158 EREGO14944 169 aa8.1□□□□□ -1.11
USP40-205ENST00000430158 UBE2D1P51668 147 aa8.1□□□□□ -1.11
USP40-205ENST00000430158 RAB5BP61020 215 aa8.1□□□□□ -1.11
USP40-205ENST00000430158 PMCHL1Q16048 86 aa8.1□□□□□ -1.11
USP40-205ENST00000430158 LINC00242Q5T6M2 205 aa8.1□□□□□ -1.11
USP40-205ENST00000430158 CDPF1Q6NVV7 123 aa8.1□□□□□ -1.11
USP40-205ENST00000430158 FAM19A3Q7Z5A8 133 aa8.1□□□□□ -1.11
USP40-205ENST00000430158 CHCHD1Q96BP2 118 aaKnown RBP8.1□□□□□ -1.11
USP40-205ENST00000430158 SCGB3A1Q96QR1 104 aa8.1□□□□□ -1.11
USP40-205ENST00000430158 NUPR1O60356 82 aa8.09□□□□□ -1.11
USP40-205ENST00000430158 SLPIP03973 132 aa8.09□□□□□ -1.11
USP40-205ENST00000430158 COX6A2Q02221 97 aa8.09□□□□□ -1.11
USP40-205ENST00000430158 IFITM10A6NMD0 228 aa8.08□□□□□ -1.12
USP40-205ENST00000430158 HIST1H2BKO60814 126 aa8.08□□□□□ -1.12
USP40-205ENST00000430158 HBDP02042 147 aa8.08□□□□□ -1.12
USP40-205ENST00000430158 HIST1H2BJP06899 126 aa8.08□□□□□ -1.12
USP40-205ENST00000430158 HIST1H2BOP23527 126 aa8.08□□□□□ -1.12
USP40-205ENST00000430158 HIST1H2BBP33778 126 aa8.08□□□□□ -1.12
USP40-205ENST00000430158 HIST1H2BDP58876 126 aa8.08□□□□□ -1.12
USP40-205ENST00000430158 HIST1H2BCP62807 126 aa8.08□□□□□ -1.12
USP40-205ENST00000430158 HIST2H2BEQ16778 126 aa8.08□□□□□ -1.12
USP40-205ENST00000430158 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.08□□□□□ -1.12
USP40-205ENST00000430158 TEX43Q6ZNM6 134 aa8.08□□□□□ -1.12
USP40-205ENST00000430158 HIST1H2BHQ93079 126 aa8.08□□□□□ -1.12
USP40-205ENST00000430158 HIST1H2BNQ99877 126 aa8.08□□□□□ -1.12
USP40-205ENST00000430158 HIST1H2BMQ99879 126 aa8.08□□□□□ -1.12
USP40-205ENST00000430158 VCX2Q9H322 139 aa8.08□□□□□ -1.12
USP40-205ENST00000430158 GVQW2A0A096LPI5 108 aaPredicted RBP8.07□□□□□ -1.12
USP40-205ENST00000430158 C16orf90A8MZG2 172 aa8.07□□□□□ -1.12
USP40-205ENST00000430158 SERF1AO75920 110 aa8.07□□□□□ -1.12
USP40-205ENST00000430158 KRTAP10-1P60331 282 aa8.07□□□□□ -1.12
USP40-205ENST00000430158 C14orf177Q52M58 125 aa8.07□□□□□ -1.12
USP40-205ENST00000430158 LCE4AQ5TA78 99 aa8.07□□□□□ -1.12
USP40-205ENST00000430158 BAGE3Q86Y29 109 aa8.07□□□□□ -1.12
USP40-205ENST00000430158 CST9LQ9H4G1 147 aa8.07□□□□□ -1.12
USP40-205ENST00000430158 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.06□□□□□ -1.12
USP40-205ENST00000430158 PAPPA-AS1Q5QFB9 102 aa8.06□□□□□ -1.12
USP40-205ENST00000430158 IGLV5-52A0A0A0MRZ9 124 aa8.05□□□□□ -1.12
USP40-205ENST00000430158 IGHV1-58A0A0C4DH39 117 aa8.05□□□□□ -1.12
USP40-205ENST00000430158 COX7A2LO14548 114 aa8.05□□□□□ -1.12
USP40-205ENST00000430158 CNBPP62633 177 aaKnown RBP8.05□□□□□ -1.12
USP40-205ENST00000430158 CFAP161Q6P656 301 aa8.05□□□□□ -1.12
USP40-205ENST00000430158 Q6ZN92 141 aa8.05□□□□□ -1.12
USP40-205ENST00000430158 C5orf38Q86SI9 138 aa8.05□□□□□ -1.12
USP40-205ENST00000430158 HERC2O95714 4834 aa8.05□□□□□ -1.12
USP40-205ENST00000430158 HSPG2P98160 4391 aa8.05□□□□□ -1.12
USP40-205ENST00000430158 A0A087WZ39 114 aa8.04□□□□□ -1.12
USP40-205ENST00000430158 A0A0J9YXV3 536 aa8.04□□□□□ -1.12
USP40-205ENST00000430158 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.04□□□□□ -1.12
USP40-205ENST00000430158 GCSHP23434 173 aa8.04□□□□□ -1.12
USP40-205ENST00000430158 PMVKQ15126 192 aa8.04□□□□□ -1.12
USP40-205ENST00000430158 FAM19A2Q8N3H0 131 aa8.04□□□□□ -1.12
USP40-205ENST00000430158 C2orf88Q9BSF0 95 aa8.04□□□□□ -1.12
USP40-205ENST00000430158 IGLV5-45A0A087WSX0 123 aa8.03□□□□□ -1.12
USP40-205ENST00000430158 hDV102S1A0JD36 115 aa8.03□□□□□ -1.12
USP40-205ENST00000430158 HIGD2BQ4VC39 106 aa8.03□□□□□ -1.12
USP40-205ENST00000430158 COA6Q5JTJ3 125 aaKnown RBP8.03□□□□□ -1.12
USP40-205ENST00000430158 C9orf163Q8N9P6 203 aa8.03□□□□□ -1.12
USP40-205ENST00000430158 IGHV3-64A0A075B6Q5 118 aa8.02□□□□□ -1.13
USP40-205ENST00000430158 HSBP1O75506 76 aa8.02□□□□□ -1.13
USP40-205ENST00000430158 ATP5LO75964 103 aa8.02□□□□□ -1.13
USP40-205ENST00000430158 LINC01620Q4KN68 170 aa8.02□□□□□ -1.13
USP40-205ENST00000430158 LINC01561Q8N1V8 128 aa8.02□□□□□ -1.13
USP40-205ENST00000430158 IGLV4-69A0A075B6H9 119 aa8.01□□□□□ -1.13
USP40-205ENST00000430158 TINCRA0A1B0GVN0 87 aa8.01□□□□□ -1.13
USP40-205ENST00000430158 KIAA0087Q14695 138 aa8.01□□□□□ -1.13
USP40-205ENST00000430158 Q6ZSA8 131 aa8.01□□□□□ -1.13
USP40-205ENST00000430158 LINC00526Q96FQ7 95 aa8.01□□□□□ -1.13
USP40-205ENST00000430158 FAM30AQ9NZY2 134 aa8.01□□□□□ -1.13
USP40-205ENST00000430158 CDKN2A-AS1Q9UH64 79 aa8.01□□□□□ -1.13
USP40-205ENST00000430158 IGLC3P0DOY3 106 aa8□□□□□ -1.13
USP40-205ENST00000430158 SEC11AP67812 179 aa8□□□□□ -1.13
USP40-205ENST00000430158 SDIM1Q6ZPB5 146 aa8□□□□□ -1.13
USP40-205ENST00000430158 IFI27L1Q96BM0 104 aa8□□□□□ -1.13
USP40-205ENST00000430158 KRTAP4-11Q9BYQ6 195 aa8□□□□□ -1.13
USP40-205ENST00000430158 TRAV12-1A0A0B4J245 112 aa7.99□□□□□ -1.13
USP40-205ENST00000430158 MALP21145 153 aa7.99□□□□□ -1.13
USP40-205ENST00000430158 XGP55808 180 aa7.99□□□□□ -1.13
USP40-205ENST00000430158 HERVK_113P63121 156 aa7.99□□□□□ -1.13
USP40-205ENST00000430158 OR10D4PQ8NGN7 298 aa7.99□□□□□ -1.13
USP40-205ENST00000430158 KRTAP17-1Q9BYP8 105 aa7.99□□□□□ -1.13
USP40-205ENST00000430158 CDK2AP2O75956 126 aa7.98□□□□□ -1.13
USP40-205ENST00000430158 APOMO95445 188 aa7.98□□□□□ -1.13
USP40-205ENST00000430158 ORAOV1Q8WV07 137 aa7.98□□□□□ -1.13
USP40-205ENST00000430158 C2orf48Q96LS8 159 aa7.98□□□□□ -1.13
USP40-205ENST00000430158 C11orf86A6NJI1 115 aa7.97□□□□□ -1.13
USP40-205ENST00000430158 SPAG11BQ08648 103 aa7.97□□□□□ -1.13
USP40-205ENST00000430158 GEMIN7Q9H840 131 aaKnown RBP7.97□□□□□ -1.13
USP40-205ENST00000430158 SMIM1B2RUZ4 78 aa7.96□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms