RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 Q8N3U1 123 aa9.51□□□□□ -0.89
VPS54-203ENST00000409558 MT-ATP8P03928 68 aa9.51□□□□□ -0.89
VPS54-203ENST00000409558 FHL3Q13643 280 aa9.51□□□□□ -0.89
VPS54-203ENST00000409558 CARD19Q96LW7 228 aa9.51□□□□□ -0.89
VPS54-203ENST00000409558 GYPEP15421 78 aa9.5□□□□□ -0.89
VPS54-203ENST00000409558 BEAN1Q3B7T3 259 aa9.5□□□□□ -0.89
VPS54-203ENST00000409558 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.5□□□□□ -0.89
VPS54-203ENST00000409558 C2orf82Q6UX34 121 aa9.5□□□□□ -0.89
VPS54-203ENST00000409558 ICOSQ9Y6W8 199 aa9.5□□□□□ -0.89
VPS54-203ENST00000409558 FBN1P35555 2871 aaKnown RBP9.49□□□□□ -0.89
VPS54-203ENST00000409558 OR13C6PQ8NH95 151 aa9.49□□□□□ -0.89
VPS54-203ENST00000409558 LITAFQ99732 161 aa9.49□□□□□ -0.89
VPS54-203ENST00000409558 TRAV4A0A0B4J268 109 aa9.49□□□□□ -0.89
VPS54-203ENST00000409558 IGLV1-51P01701 117 aa9.49□□□□□ -0.89
VPS54-203ENST00000409558 RNASE1P07998 156 aaKnown RBP9.49□□□□□ -0.89
VPS54-203ENST00000409558 MIAQ16674 131 aa9.49□□□□□ -0.89
VPS54-203ENST00000409558 TMEM86BQ8N661 226 aa9.48□□□□□ -0.89
VPS54-203ENST00000409558 COX6CP09669 75 aa9.48□□□□□ -0.89
VPS54-203ENST00000409558 HERVK_113P63121 156 aa9.48□□□□□ -0.89
VPS54-203ENST00000409558 LINC00526Q96FQ7 95 aa9.48□□□□□ -0.89
VPS54-203ENST00000409558 DNAJC30Q96LL9 226 aa9.48□□□□□ -0.89
VPS54-203ENST00000409558 LINC01620Q4KN68 170 aa9.48□□□□□ -0.89
VPS54-203ENST00000409558 TEN1Q86WV5 123 aa9.48□□□□□ -0.89
VPS54-203ENST00000409558 SMIM1B2RUZ4 78 aa9.47□□□□□ -0.89
VPS54-203ENST00000409558 CDC42SE2Q9NRR3 84 aa9.47□□□□□ -0.89
VPS54-203ENST00000409558 PKD1L1Q8TDX9 2849 aa9.47□□□□□ -0.89
VPS54-203ENST00000409558 TRAV25A0A0B4J276 109 aa9.47□□□□□ -0.89
VPS54-203ENST00000409558 C16orf74Q96GX8 76 aa9.47□□□□□ -0.89
VPS54-203ENST00000409558 ZFAND6Q6FIF0 208 aa9.47□□□□□ -0.89
VPS54-203ENST00000409558 TRBV20-1A0A075B6N2 111 aa9.47□□□□□ -0.89
VPS54-203ENST00000409558 ATXN8Q156A1 80 aa9.47□□□□□ -0.89
VPS54-203ENST00000409558 ANK3Q12955 4377 aaKnown RBP9.46□□□□□ -0.89
VPS54-203ENST00000409558 DAZ2Q13117 558 aaKnown RBP9.46□□□□□ -0.89
VPS54-203ENST00000409558 DAZ4Q86SG3 579 aaKnown RBP9.46□□□□□ -0.89
VPS54-203ENST00000409558 DAZ3Q9NR90 486 aaKnown RBP9.46□□□□□ -0.89
VPS54-203ENST00000409558 SOSTDC1Q6X4U4 206 aa9.46□□□□□ -0.9
VPS54-203ENST00000409558 TEX29Q8N6K0 151 aa9.46□□□□□ -0.9
VPS54-203ENST00000409558 PPDPFLQ8WWR9 84 aa9.46□□□□□ -0.9
VPS54-203ENST00000409558 COL6A5A8TX70 2615 aa9.46□□□□□ -0.9
VPS54-203ENST00000409558 HILS1P60008 231 aa9.46□□□□□ -0.9
VPS54-203ENST00000409558 MIR7-3HGQ8N6C7 128 aa9.46□□□□□ -0.9
VPS54-203ENST00000409558 LINC00308Q8TCZ7 52 aa9.46□□□□□ -0.9
VPS54-203ENST00000409558 PLAC8L1A1L4L8 177 aa9.45□□□□□ -0.9
VPS54-203ENST00000409558 XGP55808 180 aa9.45□□□□□ -0.9
VPS54-203ENST00000409558 FAM222AQ5U5X8 452 aa9.45□□□□□ -0.9
VPS54-203ENST00000409558 Q9HAA7 133 aa9.45□□□□□ -0.9
VPS54-203ENST00000409558 A8MTW9 85 aa9.45□□□□□ -0.9
VPS54-203ENST00000409558 C19orf73Q9NVV2 129 aa9.45□□□□□ -0.9
VPS54-203ENST00000409558 A0A0B4J2C4 111 aa9.44□□□□□ -0.9
VPS54-203ENST00000409558 C6orf226Q5I0X4 101 aa9.44□□□□□ -0.9
VPS54-203ENST00000409558 PAX4O43316 350 aa9.43□□□□□ -0.9
VPS54-203ENST00000409558 FHL2Q14192 279 aa9.43□□□□□ -0.9
VPS54-203ENST00000409558 F5H768 121 aa9.43□□□□□ -0.9
VPS54-203ENST00000409558 MGAM2Q2M2H8 2515 aa9.42□□□□□ -0.9
VPS54-203ENST00000409558 TRBV6-8A0A0A6YYG3 113 aa9.42□□□□□ -0.9
VPS54-203ENST00000409558 ATP5G1P05496 136 aa9.42□□□□□ -0.9
VPS54-203ENST00000409558 ATP6V0E2Q8NHE4 81 aa9.42□□□□□ -0.9
VPS54-203ENST00000409558 TRBV10-1A0A0K0K1A3 114 aa9.42□□□□□ -0.9
VPS54-203ENST00000409558 PRR3P79522 188 aaKnown RBP9.42□□□□□ -0.9
VPS54-203ENST00000409558 TTC32Q5I0X7 151 aa9.42□□□□□ -0.9
VPS54-203ENST00000409558 NDUFA1O15239 70 aa9.41□□□□□ -0.9
VPS54-203ENST00000409558 CDIP1Q9H305 208 aa9.41□□□□□ -0.9
VPS54-203ENST00000409558 TRAV26-1A0A087WT03 109 aa9.41□□□□□ -0.9
VPS54-203ENST00000409558 ANGP03950 147 aaKnown RBP9.41□□□□□ -0.9
VPS54-203ENST00000409558 FAM110AQ9BQ89 295 aa9.4□□□□□ -0.9
VPS54-203ENST00000409558 TIRAPP58753 221 aa9.4□□□□□ -0.9
VPS54-203ENST00000409558 CSNK1G2-AS1Q8NCQ2 148 aa9.4□□□□□ -0.9
VPS54-203ENST00000409558 COX7B2Q8TF08 81 aa9.4□□□□□ -0.9
VPS54-203ENST00000409558 H7C423 109 aa9.4□□□□□ -0.91
VPS54-203ENST00000409558 LINC00269Q8N2A0 174 aa9.4□□□□□ -0.91
VPS54-203ENST00000409558 C9orf116Q5BN46 136 aaPredicted RBP9.39□□□□□ -0.91
VPS54-203ENST00000409558 UBE2WQ96B02 151 aa9.39□□□□□ -0.91
VPS54-203ENST00000409558 SND1-IT1Q9HBX3 110 aa9.38□□□□□ -0.91
VPS54-203ENST00000409558 CKS1BP61024 79 aa9.38□□□□□ -0.91
VPS54-203ENST00000409558 SPANXDQ9BXN6 97 aa9.38□□□□□ -0.91
VPS54-203ENST00000409558 SPANXCQ9NY87 97 aa9.38□□□□□ -0.91
VPS54-203ENST00000409558 TRAV8-4A0A0B4J246 113 aa9.37□□□□□ -0.91
VPS54-203ENST00000409558 DAD1P61803 113 aa9.37□□□□□ -0.91
VPS54-203ENST00000409558 TRBV6-4A0A1B0GX49 114 aa9.37□□□□□ -0.91
VPS54-203ENST00000409558 SLPIP03973 132 aa9.37□□□□□ -0.91
VPS54-203ENST00000409558 OXLD1Q5BKU9 147 aa9.37□□□□□ -0.91
VPS54-203ENST00000409558 IL17DQ8TAD2 202 aa9.37□□□□□ -0.91
VPS54-203ENST00000409558 RETNQ9HD89 108 aa9.37□□□□□ -0.91
VPS54-203ENST00000409558 CELA1Q9UNI1 258 aa9.37□□□□□ -0.91
VPS54-203ENST00000409558 CRPP02741 224 aa9.36□□□□□ -0.91
VPS54-203ENST00000409558 EDA2RQ9HAV5 297 aa9.36□□□□□ -0.91
VPS54-203ENST00000409558 TRBV30A0A0K0K1B3 111 aa9.36□□□□□ -0.91
VPS54-203ENST00000409558 CRYBA4P53673 196 aa9.36□□□□□ -0.91
VPS54-203ENST00000409558 SPATA25Q9BR10 227 aa9.36□□□□□ -0.91
VPS54-203ENST00000409558 TRBV10-2A0A0K0K1G8 114 aa9.36□□□□□ -0.91
VPS54-203ENST00000409558 SNCGO76070 127 aa9.35□□□□□ -0.91
VPS54-203ENST00000409558 MALP21145 153 aa9.35□□□□□ -0.91
VPS54-203ENST00000409558 C16orf95Q9H693 158 aa9.35□□□□□ -0.91
VPS54-203ENST00000409558 IGHV4-28A0A0C4DH34 117 aa9.35□□□□□ -0.91
VPS54-203ENST00000409558 SBSPONQ8IVN8 264 aa9.35□□□□□ -0.91
VPS54-203ENST00000409558 IGLV5-39A0A0G2JS06 123 aa9.34□□□□□ -0.91
VPS54-203ENST00000409558 PRB2P02812 416 aaPredicted RBP9.34□□□□□ -0.91
VPS54-203ENST00000409558 FAM218AQ96MZ4 157 aa9.34□□□□□ -0.91
VPS54-203ENST00000409558 TENM3Q9P273 2699 aa9.34□□□□□ -0.91
VPS54-203ENST00000409558 LINC00959A0A1B0GUT2 108 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 99 ms