RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 FAM218AQ96MZ4 157 aa7.05□□□□□ -1.28
COL17A1-203ENST00000393211 C22orf24Q9Y442 160 aa7.05□□□□□ -1.28
COL17A1-203ENST00000393211 CELSR1Q9NYQ6 3014 aa7.05□□□□□ -1.28
COL17A1-203ENST00000393211 ZFHX3Q15911 3703 aa7.05□□□□□ -1.28
COL17A1-203ENST00000393211 SPG11Q96JI7 2443 aa7.05□□□□□ -1.28
COL17A1-203ENST00000393211 A0A087WZ39 114 aa7.05□□□□□ -1.28
COL17A1-203ENST00000393211 IGHV3OR16-9A0A0B4J2B5 98 aa7.05□□□□□ -1.28
COL17A1-203ENST00000393211 GIG44P09565 113 aaPredicted RBP7.05□□□□□ -1.28
COL17A1-203ENST00000393211 IGKV2-28A0A075B6P5 120 aa7.04□□□□□ -1.28
COL17A1-203ENST00000393211 TRBV6-8A0A0A6YYG3 113 aa7.04□□□□□ -1.28
COL17A1-203ENST00000393211 TRGV4A0A0C4DH28 118 aa7.04□□□□□ -1.28
COL17A1-203ENST00000393211 DNAL4O96015 105 aa7.04□□□□□ -1.28
COL17A1-203ENST00000393211 IGKV2D-28P01615 120 aa7.04□□□□□ -1.28
COL17A1-203ENST00000393211 C5orf38Q86SI9 138 aa7.04□□□□□ -1.28
COL17A1-203ENST00000393211 LINC00337Q8N6G1 96 aa7.04□□□□□ -1.28
COL17A1-203ENST00000393211 DNAJC9-AS1A6NH13 148 aa7.03□□□□□ -1.28
COL17A1-203ENST00000393211 LINC00158P58513 81 aa7.03□□□□□ -1.28
COL17A1-203ENST00000393211 LINC01561Q8N1V8 128 aa7.03□□□□□ -1.28
COL17A1-203ENST00000393211 SMCR5Q8TEV8 140 aa7.03□□□□□ -1.28
COL17A1-203ENST00000393211 OBSCN-AS1Q96MR7 158 aa7.03□□□□□ -1.28
COL17A1-203ENST00000393211 CHCHD5Q9BSY4 110 aa7.03□□□□□ -1.28
COL17A1-203ENST00000393211 CREBBPQ92793 2442 aa7.03□□□□□ -1.28
COL17A1-203ENST00000393211 FAM236AA0A1B0GUQ0 79 aa7.02□□□□□ -1.29
COL17A1-203ENST00000393211 FAM236BA0A1B0GV22 79 aa7.02□□□□□ -1.29
COL17A1-203ENST00000393211 CCL18P55774 89 aa7.02□□□□□ -1.29
COL17A1-203ENST00000393211 CSNK1G2-AS1Q8NCQ2 148 aa7.02□□□□□ -1.29
COL17A1-203ENST00000393211 SMIM11BQ8TCY0 68 aa7.02□□□□□ -1.29
COL17A1-203ENST00000393211 IGLV1-51P01701 117 aa7.01□□□□□ -1.29
COL17A1-203ENST00000393211 FHL2Q14192 279 aa7.01□□□□□ -1.29
COL17A1-203ENST00000393211 C11orf44Q8N8P7 122 aa7.01□□□□□ -1.29
COL17A1-203ENST00000393211 C16orf95Q9H693 158 aa7.01□□□□□ -1.29
COL17A1-203ENST00000393211 CHD6Q8TD26 2715 aa7.01□□□□□ -1.29
COL17A1-203ENST00000393211 UQCRQO14949 82 aa7.01□□□□□ -1.29
COL17A1-203ENST00000393211 LY6G6DO95868 133 aa7.01□□□□□ -1.29
COL17A1-203ENST00000393211 C19orf73Q9NVV2 129 aa7.01□□□□□ -1.29
COL17A1-203ENST00000393211 TOMM7Q9P0U1 55 aa7.01□□□□□ -1.29
COL17A1-203ENST00000393211 ANKRD17O75179 2603 aaKnown RBP7□□□□□ -1.29
COL17A1-203ENST00000393211 IGLV4-60A0A075B6I1 120 aa7□□□□□ -1.29
COL17A1-203ENST00000393211 LOC100131303A0A0U1RQF7 123 aa7□□□□□ -1.29
COL17A1-203ENST00000393211 A0A1B0GUV1 79 aa7□□□□□ -1.29
COL17A1-203ENST00000393211 A0A1B0GX51 115 aa7□□□□□ -1.29
COL17A1-203ENST00000393211 KRTAP10-9P60411 292 aa7□□□□□ -1.29
COL17A1-203ENST00000393211 GAGE2AQ6NT46 116 aa7□□□□□ -1.29
COL17A1-203ENST00000393211 KRTAP1-3Q8IUG1 177 aa7□□□□□ -1.29
COL17A1-203ENST00000393211 C3orf22Q8N5N4 141 aa7□□□□□ -1.29
COL17A1-203ENST00000393211 KIR2DL5BQ8NHK3 375 aa7□□□□□ -1.29
COL17A1-203ENST00000393211 Q9HAA7 133 aa7□□□□□ -1.29
COL17A1-203ENST00000393211 CFAP46Q8IYW2 2715 aa7□□□□□ -1.29
COL17A1-203ENST00000393211 LINC00959A0A1B0GUT2 108 aa6.99□□□□□ -1.29
COL17A1-203ENST00000393211 A0A1W2PRX2 142 aa6.99□□□□□ -1.29
COL17A1-203ENST00000393211 A0A087WYN8 130 aa6.98□□□□□ -1.29
COL17A1-203ENST00000393211 HIST1H4AP62805 103 aaKnown RBP6.98□□□□□ -1.29
COL17A1-203ENST00000393211 SS18Q15532 418 aa6.98□□□□□ -1.29
COL17A1-203ENST00000393211 Q6JHZ5 121 aa6.98□□□□□ -1.29
COL17A1-203ENST00000393211 Q8IZM0 81 aa6.98□□□□□ -1.29
COL17A1-203ENST00000393211 LINC00612Q8N6U2 182 aa6.98□□□□□ -1.29
COL17A1-203ENST00000393211 LINC00526Q96FQ7 95 aa6.98□□□□□ -1.29
COL17A1-203ENST00000393211 KLK5Q9Y337 293 aaPredicted RBP6.98□□□□□ -1.29
COL17A1-203ENST00000393211 USP9XQ93008 2570 aaPredicted RBP6.98□□□□□ -1.29
COL17A1-203ENST00000393211 ATOX1O00244 68 aa6.98□□□□□ -1.29
COL17A1-203ENST00000393211 PAX4O43316 350 aa6.98□□□□□ -1.29
COL17A1-203ENST00000393211 RPL35AP18077 110 aaKnown RBP6.98□□□□□ -1.29
COL17A1-203ENST00000393211 C6orf226Q5I0X4 101 aa6.98□□□□□ -1.29
COL17A1-203ENST00000393211 LINC00167Q96N53 147 aa6.97□□□□□ -1.29
COL17A1-203ENST00000393211 IGKV3OR2-268A0A0C4DH90 116 aa6.96□□□□□ -1.3
COL17A1-203ENST00000393211 NDUFC2O95298 119 aa6.96□□□□□ -1.3
COL17A1-203ENST00000393211 RNASE1P07998 156 aaKnown RBP6.96□□□□□ -1.3
COL17A1-203ENST00000393211 COX7CP15954 63 aa6.96□□□□□ -1.3
COL17A1-203ENST00000393211 COX17Q14061 63 aa6.96□□□□□ -1.3
COL17A1-203ENST00000393211 C9orf153Q5TBE3 101 aa6.96□□□□□ -1.3
COL17A1-203ENST00000393211 LINC01006Q8NI28 216 aa6.96□□□□□ -1.3
COL17A1-203ENST00000393211 KRTAP3-3Q9BYR6 98 aa6.96□□□□□ -1.3
COL17A1-203ENST00000393211 KRTAP3-2Q9BYR7 98 aa6.96□□□□□ -1.3
COL17A1-203ENST00000393211 ESM1Q9NQ30 184 aa6.96□□□□□ -1.3
COL17A1-203ENST00000393211 ORMDL1Q9P0S3 153 aa6.96□□□□□ -1.3
COL17A1-203ENST00000393211 VPS13CQ709C8 3753 aa6.96□□□□□ -1.3
COL17A1-203ENST00000393211 USP9YO00507 2555 aaPredicted RBP6.95□□□□□ -1.3
COL17A1-203ENST00000393211 SMIM9A6NGZ8 99 aa6.95□□□□□ -1.3
COL17A1-203ENST00000393211 LECT2O14960 151 aa6.95□□□□□ -1.3
COL17A1-203ENST00000393211 PFN2P35080 140 aa6.95□□□□□ -1.3
COL17A1-203ENST00000393211 ZNF843Q8N446 348 aa6.95□□□□□ -1.3
COL17A1-203ENST00000393211 FAM208BQ5VWN6 2430 aa6.95□□□□□ -1.3
COL17A1-203ENST00000393211 CELSR2Q9HCU4 2923 aa6.95□□□□□ -1.3
COL17A1-203ENST00000393211 ZNF462Q96JM2 2506 aa6.95□□□□□ -1.3
COL17A1-203ENST00000393211 JMJD7-PLA2G4BH0Y9G9 81 aa6.94□□□□□ -1.3
COL17A1-203ENST00000393211 S100A7L2Q5SY68 101 aa6.94□□□□□ -1.3
COL17A1-203ENST00000393211 SMIM20Q8N5G0 67 aa6.94□□□□□ -1.3
COL17A1-203ENST00000393211 OR13C6PQ8NH95 151 aa6.94□□□□□ -1.3
COL17A1-203ENST00000393211 C14orf132Q9NPU4 83 aa6.94□□□□□ -1.3
COL17A1-203ENST00000393211 MUC7Q8TAX7 377 aa6.94□□□□□ -1.3
COL17A1-203ENST00000393211 WFDC10AQ9H1F0 79 aa6.94□□□□□ -1.3
COL17A1-203ENST00000393211 COL12A1Q99715 3063 aa6.93□□□□□ -1.3
COL17A1-203ENST00000393211 FLNCQ14315 2725 aa6.93□□□□□ -1.3
COL17A1-203ENST00000393211 CCKP06307 115 aa6.93□□□□□ -1.3
COL17A1-203ENST00000393211 CRYGAP11844 174 aa6.93□□□□□ -1.3
COL17A1-203ENST00000393211 RPL18AQ02543 176 aaKnown RBP6.93□□□□□ -1.3
COL17A1-203ENST00000393211 MXRA5Q9NR99 2828 aa6.93□□□□□ -1.3
COL17A1-203ENST00000393211 CRYBG3Q68DQ2 2970 aa6.92□□□□□ -1.3
COL17A1-203ENST00000393211 IGHV4-28A0A0C4DH34 117 aa6.92□□□□□ -1.3
COL17A1-203ENST00000393211 GYPEP15421 78 aa6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms