RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 H7C423 109 aa14.69□□□□□ -0.06
CCDC88B-203ENST00000359902 DAND5Q8N907 189 aa14.69□□□□□ -0.06
CCDC88B-203ENST00000359902 IFITM1P13164 125 aa14.68□□□□□ -0.06
CCDC88B-203ENST00000359902 FOXI1Q12951 378 aa14.68□□□□□ -0.06
CCDC88B-203ENST00000359902 TRBV30A0A0K0K1B3 111 aa14.67□□□□□ -0.06
CCDC88B-203ENST00000359902 GCN1Q92616 2671 aaKnown RBP14.67□□□□□ -0.06
CCDC88B-203ENST00000359902 CRLF1O75462 422 aa14.66□□□□□ -0.06
CCDC88B-203ENST00000359902 CIRBPQ14011 172 aaKnown RBP14.66□□□□□ -0.06
CCDC88B-203ENST00000359902 TRBV6-8A0A0A6YYG3 113 aa14.65□□□□□ -0.06
CCDC88B-203ENST00000359902 TRIAP1O43715 76 aa14.65□□□□□ -0.06
CCDC88B-203ENST00000359902 DEFB130BP0DP73 79 aa14.65□□□□□ -0.06
CCDC88B-203ENST00000359902 DEFB130AP0DP74 79 aa14.65□□□□□ -0.06
CCDC88B-203ENST00000359902 GAGE6Q13070 117 aa14.65□□□□□ -0.06
CCDC88B-203ENST00000359902 KIR2DL5BQ8NHK3 375 aa14.65□□□□□ -0.06
CCDC88B-203ENST00000359902 SPATA3Q8NHX4 192 aa14.65□□□□□ -0.06
CCDC88B-203ENST00000359902 ZNF625Q96I27 306 aaPredicted RBP14.65□□□□□ -0.06
CCDC88B-203ENST00000359902 HECTD1Q9ULT8 2610 aa14.65□□□□□ -0.06
CCDC88B-203ENST00000359902 TEN1Q86WV5 123 aa14.64□□□□□ -0.07
CCDC88B-203ENST00000359902 SVIPQ8NHG7 77 aa14.64□□□□□ -0.07
CCDC88B-203ENST00000359902 LINC00612Q8N6U2 182 aa14.64□□□□□ -0.07
CCDC88B-203ENST00000359902 INAFM1C9JVW0 142 aa14.63□□□□□ -0.07
CCDC88B-203ENST00000359902 C9JAW5 83 aa14.62□□□□□ -0.07
CCDC88B-203ENST00000359902 LINC00308Q8TCZ7 52 aa14.62□□□□□ -0.07
CCDC88B-203ENST00000359902 CARD19Q96LW7 228 aa14.62□□□□□ -0.07
CCDC88B-203ENST00000359902 ICOSQ9Y6W8 199 aa14.62□□□□□ -0.07
CCDC88B-203ENST00000359902 X6R8D5 127 aa14.62□□□□□ -0.07
CCDC88B-203ENST00000359902 FN1P02751 2386 aaKnown RBP14.61□□□□□ -0.07
CCDC88B-203ENST00000359902 OTOGQ6ZRI0 2925 aa14.61□□□□□ -0.07
CCDC88B-203ENST00000359902 IGLV4-60A0A075B6I1 120 aa14.61□□□□□ -0.07
CCDC88B-203ENST00000359902 SLC25A20O43772 301 aa14.61□□□□□ -0.07
CCDC88B-203ENST00000359902 ATXN8Q156A1 80 aa14.61□□□□□ -0.07
CCDC88B-203ENST00000359902 PRIMA1Q86XR5 153 aa14.61□□□□□ -0.07
CCDC88B-203ENST00000359902 A0A0U1RRA0 63 aa14.6□□□□□ -0.07
CCDC88B-203ENST00000359902 PPDPFLQ8WWR9 84 aa14.6□□□□□ -0.07
CCDC88B-203ENST00000359902 CHCHD5Q9BSY4 110 aa14.6□□□□□ -0.07
CCDC88B-203ENST00000359902 NOTCH2Q04721 2471 aa14.59□□□□□ -0.07
CCDC88B-203ENST00000359902 C9orf66Q5T8R8 295 aa14.59□□□□□ -0.07
CCDC88B-203ENST00000359902 ANKRD29Q8N6D5 301 aa14.59□□□□□ -0.07
CCDC88B-203ENST00000359902 M0QXV9 152 aa14.58□□□□□ -0.08
CCDC88B-203ENST00000359902 LINC01620Q4KN68 170 aa14.58□□□□□ -0.08
CCDC88B-203ENST00000359902 TRAV26-1A0A087WT03 109 aa14.58□□□□□ -0.08
CCDC88B-203ENST00000359902 SMIM9A6NGZ8 99 aa14.58□□□□□ -0.08
CCDC88B-203ENST00000359902 HERV-K104P63124 156 aa14.58□□□□□ -0.08
CCDC88B-203ENST00000359902 CDIP1Q9H305 208 aa14.58□□□□□ -0.08
CCDC88B-203ENST00000359902 VWFP04275 2813 aa14.58□□□□□ -0.08
CCDC88B-203ENST00000359902 RPL13AP40429 203 aaKnown RBP14.57□□□□□ -0.08
CCDC88B-203ENST00000359902 SOSTDC1Q6X4U4 206 aa14.57□□□□□ -0.08
CCDC88B-203ENST00000359902 IGKV3OR2-268A0A0C4DH90 116 aa14.57□□□□□ -0.08
CCDC88B-203ENST00000359902 MEIG1Q5JSS6 88 aa14.57□□□□□ -0.08
CCDC88B-203ENST00000359902 GYPEP15421 78 aa14.55□□□□□ -0.08
CCDC88B-203ENST00000359902 COX6CP09669 75 aa14.55□□□□□ -0.08
CCDC88B-203ENST00000359902 COPS9Q8WXC6 57 aa14.54□□□□□ -0.08
CCDC88B-203ENST00000359902 IGHV3OR16-9A0A0B4J2B5 98 aa14.53□□□□□ -0.08
CCDC88B-203ENST00000359902 COX7B2Q8TF08 81 aa14.53□□□□□ -0.08
CCDC88B-203ENST00000359902 LINC01600Q96MT4 127 aa14.53□□□□□ -0.08
CCDC88B-203ENST00000359902 NSD1Q96L73 2696 aaPredicted RBP14.52□□□□□ -0.09
CCDC88B-203ENST00000359902 MT-ATP8P03928 68 aa14.52□□□□□ -0.09
CCDC88B-203ENST00000359902 FAM222AQ5U5X8 452 aa14.52□□□□□ -0.09
CCDC88B-203ENST00000359902 PRO0255Q9UI72 69 aa14.52□□□□□ -0.09
CCDC88B-203ENST00000359902 NBEAL2Q6ZNJ1 2754 aa14.51□□□□□ -0.09
CCDC88B-203ENST00000359902 TRBV10-2A0A0K0K1G8 114 aa14.51□□□□□ -0.09
CCDC88B-203ENST00000359902 CLEC2BQ92478 149 aa14.51□□□□□ -0.09
CCDC88B-203ENST00000359902 XGP55808 180 aa14.5□□□□□ -0.09
CCDC88B-203ENST00000359902 TOMM7Q9P0U1 55 aa14.49□□□□□ -0.09
CCDC88B-203ENST00000359902 A0A087WZ39 114 aa14.49□□□□□ -0.09
CCDC88B-203ENST00000359902 LYRM9A8MSI8 78 aa14.49□□□□□ -0.09
CCDC88B-203ENST00000359902 DEFB135Q30KP9 77 aa14.49□□□□□ -0.09
CCDC88B-203ENST00000359902 PPDPFQ9H3Y8 114 aa14.49□□□□□ -0.09
CCDC88B-203ENST00000359902 LINC00959A0A1B0GUT2 108 aa14.48□□□□□ -0.09
CCDC88B-203ENST00000359902 LST1O00453 97 aa14.48□□□□□ -0.09
CCDC88B-203ENST00000359902 TENM1Q9UKZ4 2725 aa14.48□□□□□ -0.09
CCDC88B-203ENST00000359902 CITED1Q99966 193 aa14.48□□□□□ -0.09
CCDC88B-203ENST00000359902 TMEM262E9PQX1 116 aa14.47□□□□□ -0.09
CCDC88B-203ENST00000359902 DEFB4AO15263 64 aa14.47□□□□□ -0.09
CCDC88B-203ENST00000359902 C5orf38Q86SI9 138 aa14.47□□□□□ -0.09
CCDC88B-203ENST00000359902 NTN5Q8WTR8 489 aaPredicted RBP14.47□□□□□ -0.09
CCDC88B-203ENST00000359902 A0A1B0GUV1 79 aa14.46□□□□□ -0.09
CCDC88B-203ENST00000359902 A0A096LPF7 62 aa14.46□□□□□ -0.1
CCDC88B-203ENST00000359902 PAX4O43316 350 aa14.46□□□□□ -0.1
CCDC88B-203ENST00000359902 APOC4P55056 127 aa14.45□□□□□ -0.1
CCDC88B-203ENST00000359902 SHISA2Q6UWI4 295 aa14.45□□□□□ -0.1
CCDC88B-203ENST00000359902 C2orf82Q6UX34 121 aa14.44□□□□□ -0.1
CCDC88B-203ENST00000359902 IGHV4-28A0A0C4DH34 117 aa14.43□□□□□ -0.1
CCDC88B-203ENST00000359902 MIR7-3HGQ8N6C7 128 aa14.43□□□□□ -0.1
CCDC88B-203ENST00000359902 HIVEP1P15822 2718 aa14.42□□□□□ -0.1
CCDC88B-203ENST00000359902 H3BT86 120 aa14.42□□□□□ -0.1
CCDC88B-203ENST00000359902 TEX49A0A1B0GTD5 131 aa14.41□□□□□ -0.1
CCDC88B-203ENST00000359902 COX7A2LO14548 114 aa14.41□□□□□ -0.1
CCDC88B-203ENST00000359902 ANAPC13Q9BS18 74 aa14.41□□□□□ -0.1
CCDC88B-203ENST00000359902 XCL1P47992 114 aa14.4□□□□□ -0.1
CCDC88B-203ENST00000359902 LINC00158P58513 81 aa14.4□□□□□ -0.1
CCDC88B-203ENST00000359902 SS18Q15532 418 aa14.4□□□□□ -0.1
CCDC88B-203ENST00000359902 IBA57-AS1B1ANH7 110 aa14.39□□□□□ -0.11
CCDC88B-203ENST00000359902 DAD1P61803 113 aa14.38□□□□□ -0.11
CCDC88B-203ENST00000359902 Q8NAQ8 132 aa14.38□□□□□ -0.11
CCDC88B-203ENST00000359902 WFDC9Q8NEX5 89 aa14.38□□□□□ -0.11
CCDC88B-203ENST00000359902 CLPSL2Q6UWE3 100 aa14.38□□□□□ -0.11
CCDC88B-203ENST00000359902 UBE2WQ96B02 151 aa14.38□□□□□ -0.11
CCDC88B-203ENST00000359902 SND1-IT1Q9HBX3 110 aa14.37□□□□□ -0.11
CCDC88B-203ENST00000359902 CELA1Q9UNI1 258 aa14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 107.5 ms