RNA–Protein interactions for RNA: ENST00000350034.4

TRIM55-203, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 1,177 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-203ENST00000350034 HERC2O95714 4834 aa4.8□□□□□ -1.64
TRIM55-203ENST00000350034 IGLV4-60A0A075B6I1 120 aa4.8□□□□□ -1.64
TRIM55-203ENST00000350034 IGHV3-64A0A075B6Q5 118 aa4.8□□□□□ -1.64
TRIM55-203ENST00000350034 A0A0J9YXY3 114 aa4.8□□□□□ -1.64
TRIM55-203ENST00000350034 A0A1B0GUV1 79 aa4.8□□□□□ -1.64
TRIM55-203ENST00000350034 IGHV3-30P01768 117 aa4.8□□□□□ -1.64
TRIM55-203ENST00000350034 SPINK8P0C7L1 97 aa4.8□□□□□ -1.64
TRIM55-203ENST00000350034 IGHV3-30-5P0DP03 117 aa4.8□□□□□ -1.64
TRIM55-203ENST00000350034 PTTG1IPP53801 180 aa4.8□□□□□ -1.64
TRIM55-203ENST00000350034 LITAFQ99732 161 aa4.8□□□□□ -1.64
TRIM55-203ENST00000350034 NOTCH3Q9UM47 2321 aa4.8□□□□□ -1.64
TRIM55-203ENST00000350034 TRAV13-1A0A0B4J241 112 aa4.79□□□□□ -1.64
TRIM55-203ENST00000350034 SMIM1B2RUZ4 78 aa4.79□□□□□ -1.64
TRIM55-203ENST00000350034 K7ERJ3 54 aa4.79□□□□□ -1.64
TRIM55-203ENST00000350034 CCL25O15444 150 aa4.79□□□□□ -1.64
TRIM55-203ENST00000350034 TIMM17BO60830 172 aa4.79□□□□□ -1.64
TRIM55-203ENST00000350034 SRSF9Q13242 221 aaKnown RBP eCLIP4.79□□□□□ -1.64
TRIM55-203ENST00000350034 VAMP3Q15836 100 aa4.79□□□□□ -1.64
TRIM55-203ENST00000350034 CHCHD5Q9BSY4 110 aa4.79□□□□□ -1.64
TRIM55-203ENST00000350034 C11orf68Q9H3H3 251 aaKnown RBP4.79□□□□□ -1.64
TRIM55-203ENST00000350034 NHP2Q9NX24 153 aaKnown RBP4.79□□□□□ -1.64
TRIM55-203ENST00000350034 NDUFA12Q9UI09 145 aa4.79□□□□□ -1.64
TRIM55-203ENST00000350034 TMEM238LA0A1B0GVL6 79 aa4.78□□□□□ -1.64
TRIM55-203ENST00000350034 A0A1W2PPM0 123 aa4.78□□□□□ -1.64
TRIM55-203ENST00000350034 A6NJY4 79 aa4.78□□□□□ -1.64
TRIM55-203ENST00000350034 IGLL5B9A064 214 aa4.78□□□□□ -1.64
TRIM55-203ENST00000350034 G3V4G9 280 aa4.78□□□□□ -1.64
TRIM55-203ENST00000350034 H3BUT2 72 aa4.78□□□□□ -1.64
TRIM55-203ENST00000350034 NDUFA1O15239 70 aa4.78□□□□□ -1.64
TRIM55-203ENST00000350034 RBX1P62877 108 aa4.78□□□□□ -1.64
TRIM55-203ENST00000350034 MRPL23Q16540 153 aaKnown RBP4.78□□□□□ -1.64
TRIM55-203ENST00000350034 SH2D6Q7Z4S9 175 aa4.78□□□□□ -1.64
TRIM55-203ENST00000350034 RAB37Q96AX2 223 aa4.78□□□□□ -1.64
TRIM55-203ENST00000350034 RETNQ9HD89 108 aa4.78□□□□□ -1.64
TRIM55-203ENST00000350034 RYR2Q92736 4967 aa4.78□□□□□ -1.64
TRIM55-203ENST00000350034 TRRAPQ9Y4A5 3859 aa4.77□□□□□ -1.65
TRIM55-203ENST00000350034 IGHV3OR16-9A0A0B4J2B5 98 aa4.77□□□□□ -1.65
TRIM55-203ENST00000350034 LINC00959A0A1B0GUT2 108 aa4.77□□□□□ -1.65
TRIM55-203ENST00000350034 TMEM238C9JI98 176 aa4.77□□□□□ -1.65
TRIM55-203ENST00000350034 H3BNG1 76 aa4.77□□□□□ -1.65
TRIM55-203ENST00000350034 K7EP34 96 aa4.77□□□□□ -1.65
TRIM55-203ENST00000350034 ZNF625Q96I27 306 aaPredicted RBP4.77□□□□□ -1.65
TRIM55-203ENST00000350034 SPANXDQ9BXN6 97 aa4.77□□□□□ -1.65
TRIM55-203ENST00000350034 SPANXCQ9NY87 97 aa4.77□□□□□ -1.65
TRIM55-203ENST00000350034 A0A087WZ39 114 aa4.76□□□□□ -1.65
TRIM55-203ENST00000350034 A0A096LPF7 62 aa4.76□□□□□ -1.65
TRIM55-203ENST00000350034 LOC100996750A0A140TA64 210 aa4.76□□□□□ -1.65
TRIM55-203ENST00000350034 EIF4EBP3O60516 100 aaPredicted RBP4.76□□□□□ -1.65
TRIM55-203ENST00000350034 CFC1BP0CG36 223 aa4.76□□□□□ -1.65
TRIM55-203ENST00000350034 CFC1P0CG37 223 aa4.76□□□□□ -1.65
TRIM55-203ENST00000350034 ADAMTSL4-AS1Q5T5F5 129 aa4.76□□□□□ -1.65
TRIM55-203ENST00000350034 KPRPQ5T749 579 aaPredicted RBP4.76□□□□□ -1.65
TRIM55-203ENST00000350034 LELP1Q5T871 98 aa4.76□□□□□ -1.65
TRIM55-203ENST00000350034 MUSTN1Q8IVN3 82 aa4.76□□□□□ -1.65
TRIM55-203ENST00000350034 LINC01561Q8N1V8 128 aa4.76□□□□□ -1.65
TRIM55-203ENST00000350034 NAA38Q9BRA0 125 aaKnown RBP4.76□□□□□ -1.65
TRIM55-203ENST00000350034 KRTAP4-6Q9BYQ5 205 aa4.76□□□□□ -1.65
TRIM55-203ENST00000350034 ICOSQ9Y6W8 199 aa4.76□□□□□ -1.65
TRIM55-203ENST00000350034 A0A0B4J2C4 111 aa4.75□□□□□ -1.65
TRIM55-203ENST00000350034 A4D1N5 150 aa4.75□□□□□ -1.65
TRIM55-203ENST00000350034 GAGE10A6NGK3 116 aa4.75□□□□□ -1.65
TRIM55-203ENST00000350034 FABP2P12104 132 aa4.75□□□□□ -1.65
TRIM55-203ENST00000350034 IFITM1P13164 125 aa4.75□□□□□ -1.65
TRIM55-203ENST00000350034 HERV-K104P63124 156 aa4.75□□□□□ -1.65
TRIM55-203ENST00000350034 MIAQ16674 131 aa4.75□□□□□ -1.65
TRIM55-203ENST00000350034 GTF2H5Q6ZYL4 71 aa4.75□□□□□ -1.65
TRIM55-203ENST00000350034 PPDPFQ9H3Y8 114 aa4.75□□□□□ -1.65
TRIM55-203ENST00000350034 Q9H8V8 135 aa4.75□□□□□ -1.65
TRIM55-203ENST00000350034 TMEM262E9PQX1 116 aa4.74□□□□□ -1.65
TRIM55-203ENST00000350034 HTN3P15516 51 aa4.74□□□□□ -1.65
TRIM55-203ENST00000350034 RPL24P83731 157 aaKnown RBP4.74□□□□□ -1.65
TRIM55-203ENST00000350034 LYPD5Q6UWN5 251 aa4.74□□□□□ -1.65
TRIM55-203ENST00000350034 SPCS1Q9Y6A9 102 aa4.74□□□□□ -1.65
TRIM55-203ENST00000350034 TRAV16A0A0A6YYK6 109 aaPredicted RBP4.73□□□□□ -1.65
TRIM55-203ENST00000350034 K7EIL1 84 aa4.73□□□□□ -1.65
TRIM55-203ENST00000350034 APOMO95445 188 aa4.73□□□□□ -1.65
TRIM55-203ENST00000350034 TSPAN13O95857 204 aa4.73□□□□□ -1.65
TRIM55-203ENST00000350034 SS18Q15532 418 aa4.73□□□□□ -1.65
TRIM55-203ENST00000350034 Q6ZTC4 211 aa4.73□□□□□ -1.65
TRIM55-203ENST00000350034 COX7B2Q8TF08 81 aa4.73□□□□□ -1.65
TRIM55-203ENST00000350034 TM2D3Q9BRN9 247 aa4.73□□□□□ -1.65
TRIM55-203ENST00000350034 PRR34Q9NV39 138 aa4.73□□□□□ -1.65
TRIM55-203ENST00000350034 PGPEP1Q9NXJ5 209 aa4.73□□□□□ -1.65
TRIM55-203ENST00000350034 PRO1854Q9UHT4 67 aa4.73□□□□□ -1.65
TRIM55-203ENST00000350034 TENM3Q9P273 2699 aa4.72□□□□□ -1.65
TRIM55-203ENST00000350034 IGKV3OR2-268A0A0C4DH90 116 aa4.72□□□□□ -1.65
TRIM55-203ENST00000350034 A0A0J9YWU9 116 aa4.72□□□□□ -1.65
TRIM55-203ENST00000350034 IGHV3-33P01772 117 aa4.72□□□□□ -1.65
TRIM55-203ENST00000350034 CIRBPQ14011 172 aaKnown RBP4.72□□□□□ -1.65
TRIM55-203ENST00000350034 CD164L2Q6UWJ8 174 aa4.72□□□□□ -1.65
TRIM55-203ENST00000350034 C5orf38Q86SI9 138 aa4.72□□□□□ -1.65
TRIM55-203ENST00000350034 LINC00269Q8N2A0 174 aa4.72□□□□□ -1.65
TRIM55-203ENST00000350034 Q8N3U1 123 aa4.72□□□□□ -1.65
TRIM55-203ENST00000350034 SPATA25Q9BR10 227 aa4.72□□□□□ -1.65
TRIM55-203ENST00000350034 PRSS2P07478 247 aa4.71□□□□□ -1.66
TRIM55-203ENST00000350034 REG3AQ06141 175 aa4.71□□□□□ -1.66
TRIM55-203ENST00000350034 SFTA2Q6UW10 78 aa4.71□□□□□ -1.66
TRIM55-203ENST00000350034 SOSTDC1Q6X4U4 206 aa4.71□□□□□ -1.66
TRIM55-203ENST00000350034 C11orf45Q8TAV5 145 aa4.71□□□□□ -1.66
TRIM55-203ENST00000350034 LINC00308Q8TCZ7 52 aa4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 89.8 ms