RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 TRRAPQ9Y4A5 3859 aa10.87□□□□□ -0.67
UPF3B-202ENST00000345865 J3QR89 54 aa10.87□□□□□ -0.67
UPF3B-202ENST00000345865 TRIAP1O43715 76 aa10.87□□□□□ -0.67
UPF3B-202ENST00000345865 ATP6V0E2Q8NHE4 81 aa10.87□□□□□ -0.67
UPF3B-202ENST00000345865 CARD19Q96LW7 228 aa10.87□□□□□ -0.67
UPF3B-202ENST00000345865 NSD1Q96L73 2696 aaPredicted RBP10.87□□□□□ -0.67
UPF3B-202ENST00000345865 GAGE12HA6NDE8 117 aa10.87□□□□□ -0.67
UPF3B-202ENST00000345865 UBE2L6O14933 153 aa10.87□□□□□ -0.67
UPF3B-202ENST00000345865 TRBV30A0A0K0K1B3 111 aa10.86□□□□□ -0.67
UPF3B-202ENST00000345865 A0A0U1RRA0 63 aa10.86□□□□□ -0.67
UPF3B-202ENST00000345865 CRLF1O75462 422 aa10.86□□□□□ -0.67
UPF3B-202ENST00000345865 GAGE6Q13070 117 aa10.85□□□□□ -0.67
UPF3B-202ENST00000345865 TEN1Q86WV5 123 aa10.85□□□□□ -0.67
UPF3B-202ENST00000345865 SPATA25Q9BR10 227 aa10.85□□□□□ -0.67
UPF3B-202ENST00000345865 IGLV4-60A0A075B6I1 120 aa10.85□□□□□ -0.67
UPF3B-202ENST00000345865 C9JAW5 83 aa10.85□□□□□ -0.67
UPF3B-202ENST00000345865 CIDEAO60543 219 aa10.85□□□□□ -0.67
UPF3B-202ENST00000345865 DEFB130BP0DP73 79 aa10.85□□□□□ -0.67
UPF3B-202ENST00000345865 DEFB130AP0DP74 79 aa10.85□□□□□ -0.67
UPF3B-202ENST00000345865 RNF183Q96D59 192 aa10.84□□□□□ -0.67
UPF3B-202ENST00000345865 TRBV6-8A0A0A6YYG3 113 aa10.84□□□□□ -0.67
UPF3B-202ENST00000345865 SLC25A20O43772 301 aa10.84□□□□□ -0.67
UPF3B-202ENST00000345865 IFITM1P13164 125 aa10.84□□□□□ -0.67
UPF3B-202ENST00000345865 SOSTDC1Q6X4U4 206 aa10.84□□□□□ -0.67
UPF3B-202ENST00000345865 ANKRD29Q8N6D5 301 aa10.84□□□□□ -0.67
UPF3B-202ENST00000345865 ICOSQ9Y6W8 199 aa10.84□□□□□ -0.67
UPF3B-202ENST00000345865 INAFM1C9JVW0 142 aa10.83□□□□□ -0.68
UPF3B-202ENST00000345865 LINC00308Q8TCZ7 52 aa10.83□□□□□ -0.68
UPF3B-202ENST00000345865 X6R8D5 127 aa10.83□□□□□ -0.68
UPF3B-202ENST00000345865 H7C423 109 aa10.82□□□□□ -0.68
UPF3B-202ENST00000345865 SMAGPQ0VAQ4 97 aa10.82□□□□□ -0.68
UPF3B-202ENST00000345865 LINC00612Q8N6U2 182 aa10.82□□□□□ -0.68
UPF3B-202ENST00000345865 IGKV3OR2-268A0A0C4DH90 116 aa10.81□□□□□ -0.68
UPF3B-202ENST00000345865 CIRBPQ14011 172 aaKnown RBP10.81□□□□□ -0.68
UPF3B-202ENST00000345865 PRIMA1Q86XR5 153 aa10.81□□□□□ -0.68
UPF3B-202ENST00000345865 KIR2DL5BQ8NHK3 375 aa10.81□□□□□ -0.68
UPF3B-202ENST00000345865 PPDPFLQ8WWR9 84 aa10.81□□□□□ -0.68
UPF3B-202ENST00000345865 ATXN8Q156A1 80 aa10.81□□□□□ -0.68
UPF3B-202ENST00000345865 LINC01620Q4KN68 170 aa10.81□□□□□ -0.68
UPF3B-202ENST00000345865 SIGMAR1Q99720 223 aa10.81□□□□□ -0.68
UPF3B-202ENST00000345865 RPL13AP40429 203 aaKnown RBP10.8□□□□□ -0.68
UPF3B-202ENST00000345865 HIVEP1P15822 2718 aa10.8□□□□□ -0.68
UPF3B-202ENST00000345865 CHCHD5Q9BSY4 110 aa10.8□□□□□ -0.68
UPF3B-202ENST00000345865 CDIP1Q9H305 208 aa10.8□□□□□ -0.68
UPF3B-202ENST00000345865 CLEC2BQ92478 149 aa10.79□□□□□ -0.68
UPF3B-202ENST00000345865 MEIG1Q5JSS6 88 aa10.78□□□□□ -0.68
UPF3B-202ENST00000345865 M0QXV9 152 aa10.78□□□□□ -0.68
UPF3B-202ENST00000345865 ATRQ13535 2644 aa10.77□□□□□ -0.68
UPF3B-202ENST00000345865 IGHV3OR16-9A0A0B4J2B5 98 aa10.77□□□□□ -0.69
UPF3B-202ENST00000345865 GYPEP15421 78 aa10.77□□□□□ -0.69
UPF3B-202ENST00000345865 HERV-K104P63124 156 aa10.75□□□□□ -0.69
UPF3B-202ENST00000345865 TRBV10-2A0A0K0K1G8 114 aa10.75□□□□□ -0.69
UPF3B-202ENST00000345865 DEFB4AO15263 64 aa10.75□□□□□ -0.69
UPF3B-202ENST00000345865 C9orf66Q5T8R8 295 aa10.75□□□□□ -0.69
UPF3B-202ENST00000345865 FAM222AQ5U5X8 452 aa10.75□□□□□ -0.69
UPF3B-202ENST00000345865 COX7B2Q8TF08 81 aa10.75□□□□□ -0.69
UPF3B-202ENST00000345865 A0A096LPF7 62 aa10.74□□□□□ -0.69
UPF3B-202ENST00000345865 NTN5Q8WTR8 489 aaPredicted RBP10.74□□□□□ -0.69
UPF3B-202ENST00000345865 LINC01600Q96MT4 127 aa10.74□□□□□ -0.69
UPF3B-202ENST00000345865 TOMM7Q9P0U1 55 aa10.74□□□□□ -0.69
UPF3B-202ENST00000345865 TEP1Q99973 2627 aaKnown RBP10.74□□□□□ -0.69
UPF3B-202ENST00000345865 COX6CP09669 75 aa10.74□□□□□ -0.69
UPF3B-202ENST00000345865 DEFB135Q30KP9 77 aa10.74□□□□□ -0.69
UPF3B-202ENST00000345865 SMIM9A6NGZ8 99 aa10.73□□□□□ -0.69
UPF3B-202ENST00000345865 LST1O00453 97 aa10.73□□□□□ -0.69
UPF3B-202ENST00000345865 LINC00959A0A1B0GUT2 108 aa10.73□□□□□ -0.69
UPF3B-202ENST00000345865 C5orf38Q86SI9 138 aa10.73□□□□□ -0.69
UPF3B-202ENST00000345865 PRO0255Q9UI72 69 aa10.72□□□□□ -0.69
UPF3B-202ENST00000345865 A0A087WZ39 114 aa10.72□□□□□ -0.69
UPF3B-202ENST00000345865 TEX49A0A1B0GTD5 131 aa10.72□□□□□ -0.69
UPF3B-202ENST00000345865 SHISA2Q6UWI4 295 aa10.71□□□□□ -0.69
UPF3B-202ENST00000345865 XGP55808 180 aa10.7□□□□□ -0.7
UPF3B-202ENST00000345865 MIR7-3HGQ8N6C7 128 aa10.7□□□□□ -0.7
UPF3B-202ENST00000345865 TMEM262E9PQX1 116 aa10.7□□□□□ -0.7
UPF3B-202ENST00000345865 MT-ATP8P03928 68 aa10.69□□□□□ -0.7
UPF3B-202ENST00000345865 C2orf82Q6UX34 121 aa10.69□□□□□ -0.7
UPF3B-202ENST00000345865 CITED1Q99966 193 aa10.69□□□□□ -0.7
UPF3B-202ENST00000345865 CLPSL2Q6UWE3 100 aa10.69□□□□□ -0.7
UPF3B-202ENST00000345865 COPS9Q8WXC6 57 aa10.69□□□□□ -0.7
UPF3B-202ENST00000345865 A0A1B0GUV1 79 aa10.68□□□□□ -0.7
UPF3B-202ENST00000345865 LYRM9A8MSI8 78 aa10.68□□□□□ -0.7
UPF3B-202ENST00000345865 PAX4O43316 350 aa10.68□□□□□ -0.7
UPF3B-202ENST00000345865 IGHV4-28A0A0C4DH34 117 aa10.68□□□□□ -0.7
UPF3B-202ENST00000345865 SCGB1A1P11684 91 aa10.68□□□□□ -0.7
UPF3B-202ENST00000345865 XCL1P47992 114 aa10.68□□□□□ -0.7
UPF3B-202ENST00000345865 Q8N3U1 123 aa10.67□□□□□ -0.7
UPF3B-202ENST00000345865 PPDPFQ9H3Y8 114 aa10.67□□□□□ -0.7
UPF3B-202ENST00000345865 CELA1Q9UNI1 258 aa10.67□□□□□ -0.7
UPF3B-202ENST00000345865 IGKV2-28A0A075B6P5 120 aa10.67□□□□□ -0.7
UPF3B-202ENST00000345865 COX7A2LO14548 114 aa10.67□□□□□ -0.7
UPF3B-202ENST00000345865 IGKV2D-28P01615 120 aa10.67□□□□□ -0.7
UPF3B-202ENST00000345865 H3BT86 120 aa10.66□□□□□ -0.7
UPF3B-202ENST00000345865 LINC00337Q8N6G1 96 aa10.66□□□□□ -0.7
UPF3B-202ENST00000345865 LINC00158P58513 81 aa10.66□□□□□ -0.7
UPF3B-202ENST00000345865 Q8NAQ8 132 aa10.65□□□□□ -0.7
UPF3B-202ENST00000345865 UBE2WQ96B02 151 aa10.65□□□□□ -0.7
UPF3B-202ENST00000345865 C11orf68Q9H3H3 251 aaKnown RBP10.65□□□□□ -0.7
UPF3B-202ENST00000345865 ANK2Q01484 3957 aa10.65□□□□□ -0.7
UPF3B-202ENST00000345865 PFN2P35080 140 aa10.64□□□□□ -0.71
UPF3B-202ENST00000345865 APOC4P55056 127 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms