RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 TIMM21Q9BVV7 248 aa9.19□□□□□ -0.94
CLK3-201ENST00000345005 IGLV4-3A0A075B6K6 122 aa9.18□□□□□ -0.94
CLK3-201ENST00000345005 IGHV3-73A0A0B4J1V6 119 aa9.18□□□□□ -0.94
CLK3-201ENST00000345005 A0A0J9YXY3 114 aa9.18□□□□□ -0.94
CLK3-201ENST00000345005 TIMM17BO60830 172 aa9.18□□□□□ -0.94
CLK3-201ENST00000345005 SMIM20Q8N5G0 67 aa9.18□□□□□ -0.94
CLK3-201ENST00000345005 COPS9Q8WXC6 57 aa9.18□□□□□ -0.94
CLK3-201ENST00000345005 FAM240AA0A1B0GVK7 77 aa9.17□□□□□ -0.94
CLK3-201ENST00000345005 H3BT86 120 aa9.17□□□□□ -0.94
CLK3-201ENST00000345005 KIR2DL5BQ8NHK3 375 aa9.17□□□□□ -0.94
CLK3-201ENST00000345005 OVOL2Q9BRP0 275 aa9.17□□□□□ -0.94
CLK3-201ENST00000345005 IMUPQ9GZP8 106 aa9.17□□□□□ -0.94
CLK3-201ENST00000345005 IGHV3-53P01767 116 aa9.17□□□□□ -0.94
CLK3-201ENST00000345005 NOP10Q9NPE3 64 aaKnown RBP9.17□□□□□ -0.94
CLK3-201ENST00000345005 IGHV1-58A0A0C4DH39 117 aa9.16□□□□□ -0.94
CLK3-201ENST00000345005 TINCRA0A1B0GVN0 87 aa9.16□□□□□ -0.94
CLK3-201ENST00000345005 PLAC8L1A1L4L8 177 aa9.16□□□□□ -0.94
CLK3-201ENST00000345005 APOC4P55056 127 aa9.16□□□□□ -0.94
CLK3-201ENST00000345005 Q6ZTI0 123 aa9.16□□□□□ -0.94
CLK3-201ENST00000345005 DNAJC30Q96LL9 226 aa9.16□□□□□ -0.94
CLK3-201ENST00000345005 TRAV8-4A0A0B4J246 113 aa9.15□□□□□ -0.94
CLK3-201ENST00000345005 TRAV4A0A0B4J268 109 aa9.15□□□□□ -0.94
CLK3-201ENST00000345005 A0A0J9YXV3 536 aa9.15□□□□□ -0.94
CLK3-201ENST00000345005 SMIM9A6NGZ8 99 aa9.15□□□□□ -0.94
CLK3-201ENST00000345005 IGHV3-30-3P0DP02 117 aa9.15□□□□□ -0.94
CLK3-201ENST00000345005 Q6ZSN1 163 aa9.15□□□□□ -0.94
CLK3-201ENST00000345005 UBE2WQ96B02 151 aa9.15□□□□□ -0.95
CLK3-201ENST00000345005 MIAQ16674 131 aa9.14□□□□□ -0.95
CLK3-201ENST00000345005 CCDC179H3BU77 68 aa9.13□□□□□ -0.95
CLK3-201ENST00000345005 ATP5G1P05496 136 aa9.13□□□□□ -0.95
CLK3-201ENST00000345005 CIRBPQ14011 172 aaKnown RBP9.13□□□□□ -0.95
CLK3-201ENST00000345005 NTN5Q8WTR8 489 aaPredicted RBP9.13□□□□□ -0.95
CLK3-201ENST00000345005 ICOSQ9Y6W8 199 aa9.13□□□□□ -0.95
CLK3-201ENST00000345005 PRSS2P07478 247 aa9.12□□□□□ -0.95
CLK3-201ENST00000345005 C2orf82Q6UX34 121 aa9.12□□□□□ -0.95
CLK3-201ENST00000345005 VSIG2Q96IQ7 327 aa9.12□□□□□ -0.95
CLK3-201ENST00000345005 NDUFA12Q9UI09 145 aa9.12□□□□□ -0.95
CLK3-201ENST00000345005 TRGV2A0A075B6R0 118 aa9.12□□□□□ -0.95
CLK3-201ENST00000345005 TRBV7-7A0A0K0K1E9 115 aa9.12□□□□□ -0.95
CLK3-201ENST00000345005 H7C2G1 150 aa9.12□□□□□ -0.95
CLK3-201ENST00000345005 DEFB121Q5J5C9 76 aa9.12□□□□□ -0.95
CLK3-201ENST00000345005 LITAFQ99732 161 aa9.12□□□□□ -0.95
CLK3-201ENST00000345005 OPRPNQ99935 248 aaPredicted RBP9.12□□□□□ -0.95
CLK3-201ENST00000345005 TRIAP1O43715 76 aa9.11□□□□□ -0.95
CLK3-201ENST00000345005 ACYP1P07311 99 aa9.11□□□□□ -0.95
CLK3-201ENST00000345005 TIRAPP58753 221 aa9.11□□□□□ -0.95
CLK3-201ENST00000345005 C5orf47Q569G3 176 aa9.11□□□□□ -0.95
CLK3-201ENST00000345005 OXLD1Q5BKU9 147 aa9.11□□□□□ -0.95
CLK3-201ENST00000345005 MEIG1Q5JSS6 88 aa9.11□□□□□ -0.95
CLK3-201ENST00000345005 X6R8D5 127 aa9.11□□□□□ -0.95
CLK3-201ENST00000345005 FBN3Q75N90 2809 aa9.11□□□□□ -0.95
CLK3-201ENST00000345005 TRBV10-1A0A0K0K1A3 114 aa9.1□□□□□ -0.95
CLK3-201ENST00000345005 EIF4EBP3O60516 100 aaPredicted RBP9.1□□□□□ -0.95
CLK3-201ENST00000345005 DEFB104AQ8WTQ1 72 aa9.1□□□□□ -0.95
CLK3-201ENST00000345005 K7EQD1 137 aa9.1□□□□□ -0.95
CLK3-201ENST00000345005 IGHV4-30-4P0DP06 118 aa9.1□□□□□ -0.95
CLK3-201ENST00000345005 Q9UF83 564 aa9.1□□□□□ -0.95
CLK3-201ENST00000345005 TRRAPQ9Y4A5 3859 aa9.09□□□□□ -0.95
CLK3-201ENST00000345005 A0A1B0GX51 115 aa9.09□□□□□ -0.95
CLK3-201ENST00000345005 LST1O00453 97 aa9.09□□□□□ -0.95
CLK3-201ENST00000345005 EGFEM1PQ0D2K5 195 aa9.09□□□□□ -0.95
CLK3-201ENST00000345005 DEFB135Q30KP9 77 aa9.09□□□□□ -0.95
CLK3-201ENST00000345005 C15orf53Q8NAA6 179 aa9.09□□□□□ -0.95
CLK3-201ENST00000345005 PPDPFQ9H3Y8 114 aa9.09□□□□□ -0.95
CLK3-201ENST00000345005 IGHV3-64A0A075B6Q5 118 aa9.08□□□□□ -0.96
CLK3-201ENST00000345005 RPS28P62857 69 aaKnown RBP9.08□□□□□ -0.96
CLK3-201ENST00000345005 RPL36AP83881 106 aaKnown RBP9.08□□□□□ -0.96
CLK3-201ENST00000345005 RPL36ALQ969Q0 106 aaKnown RBP9.08□□□□□ -0.96
CLK3-201ENST00000345005 H7C423 109 aa9.08□□□□□ -0.96
CLK3-201ENST00000345005 LINC00612Q8N6U2 182 aa9.08□□□□□ -0.96
CLK3-201ENST00000345005 IGLV5-45A0A087WSX0 123 aa9.07□□□□□ -0.96
CLK3-201ENST00000345005 TRGV4A0A0C4DH28 118 aa9.07□□□□□ -0.96
CLK3-201ENST00000345005 TRBV6-4A0A1B0GX49 114 aa9.07□□□□□ -0.96
CLK3-201ENST00000345005 NDUFA1O15239 70 aa9.07□□□□□ -0.96
CLK3-201ENST00000345005 KRTAP10-11P60412 298 aa9.07□□□□□ -0.96
CLK3-201ENST00000345005 UBE2D4Q9Y2X8 147 aa9.07□□□□□ -0.96
CLK3-201ENST00000345005 TEX49A0A1B0GTD5 131 aa9.06□□□□□ -0.96
CLK3-201ENST00000345005 LYRM9A8MSI8 78 aa9.06□□□□□ -0.96
CLK3-201ENST00000345005 A8MZ25 164 aa9.05□□□□□ -0.96
CLK3-201ENST00000345005 MIFP14174 115 aa9.05□□□□□ -0.96
CLK3-201ENST00000345005 DAZ4Q86SG3 579 aaKnown RBP9.05□□□□□ -0.96
CLK3-201ENST00000345005 TMEM101Q96IK0 257 aa9.05□□□□□ -0.96
CLK3-201ENST00000345005 CHCHD7Q9BUK0 85 aa9.05□□□□□ -0.96
CLK3-201ENST00000345005 DAZ3Q9NR90 486 aaKnown RBP9.05□□□□□ -0.96
CLK3-201ENST00000345005 NBEAL2Q6ZNJ1 2754 aa9.05□□□□□ -0.96
CLK3-201ENST00000345005 DEFB130BP0DP73 79 aa9.05□□□□□ -0.96
CLK3-201ENST00000345005 DEFB130AP0DP74 79 aa9.05□□□□□ -0.96
CLK3-201ENST00000345005 HERVK_113P63121 156 aa9.05□□□□□ -0.96
CLK3-201ENST00000345005 FHL2Q14192 279 aa9.05□□□□□ -0.96
CLK3-201ENST00000345005 IGHV3-38A0A0C4DH36 116 aa9.04□□□□□ -0.96
CLK3-201ENST00000345005 ADAMTSL4-AS1Q5T5F5 129 aa9.04□□□□□ -0.96
CLK3-201ENST00000345005 FAM19A3Q7Z5A8 133 aa9.04□□□□□ -0.96
CLK3-201ENST00000345005 FAM104AQ969W3 186 aa9.04□□□□□ -0.96
CLK3-201ENST00000345005 PKD1L1Q8TDX9 2849 aa9.04□□□□□ -0.96
CLK3-201ENST00000345005 TRAV8-3A0A0A6YYJ7 113 aa9.03□□□□□ -0.96
CLK3-201ENST00000345005 UQCRQO14949 82 aa9.03□□□□□ -0.96
CLK3-201ENST00000345005 FAM222AQ5U5X8 452 aa9.03□□□□□ -0.96
CLK3-201ENST00000345005 DGAT2L7PQ6IED9 249 aa9.03□□□□□ -0.96
CLK3-201ENST00000345005 IGHV4-28A0A0C4DH34 117 aa9.03□□□□□ -0.96
CLK3-201ENST00000345005 Q8NAQ8 132 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms