RNA–Protein interactions for RNA: ENST00000298130.4

SPTSSA-201, Transcript of serine palmitoyltransferase small subunit A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTSSA, Length 2,777 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTSSA-201ENST00000298130 CITED1Q99966 193 aa17.32■□□□□ 0.36
SPTSSA-201ENST00000298130 ANAPC13Q9BS18 74 aa17.32■□□□□ 0.36
SPTSSA-201ENST00000298130 TIMM17BO60830 172 aa17.31■□□□□ 0.36
SPTSSA-201ENST00000298130 TOMM7Q9P0U1 55 aa17.31■□□□□ 0.36
SPTSSA-201ENST00000298130 C15orf53Q8NAA6 179 aa17.31■□□□□ 0.36
SPTSSA-201ENST00000298130 UBE2L6O14933 153 aa17.3■□□□□ 0.36
SPTSSA-201ENST00000298130 GAGE6Q13070 117 aa17.3■□□□□ 0.36
SPTSSA-201ENST00000298130 F5H768 121 aa17.29■□□□□ 0.36
SPTSSA-201ENST00000298130 GCN1Q92616 2671 aaKnown RBP17.29■□□□□ 0.36
SPTSSA-201ENST00000298130 DAZ2Q13117 558 aaKnown RBP17.28■□□□□ 0.36
SPTSSA-201ENST00000298130 DAZ4Q86SG3 579 aaKnown RBP17.28■□□□□ 0.36
SPTSSA-201ENST00000298130 DAZ3Q9NR90 486 aaKnown RBP17.28■□□□□ 0.36
SPTSSA-201ENST00000298130 GAGE2BQ13066 116 aa17.28■□□□□ 0.36
SPTSSA-201ENST00000298130 GAGE2EQ4V326 116 aa17.28■□□□□ 0.36
SPTSSA-201ENST00000298130 GAGE2DQ9UEU5 116 aa17.28■□□□□ 0.36
SPTSSA-201ENST00000298130 PLAC8L1A1L4L8 177 aa17.27■□□□□ 0.35
SPTSSA-201ENST00000298130 TMEM243Q9BU79 118 aa17.26■□□□□ 0.35
SPTSSA-201ENST00000298130 ITPR2Q14571 2701 aa17.26■□□□□ 0.35
SPTSSA-201ENST00000298130 TRBV10-1A0A0K0K1A3 114 aa17.25■□□□□ 0.35
SPTSSA-201ENST00000298130 H3BT86 120 aa17.25■□□□□ 0.35
SPTSSA-201ENST00000298130 TRAV25A0A0B4J276 109 aa17.24■□□□□ 0.35
SPTSSA-201ENST00000298130 TENM4Q6N022 2769 aa17.24■□□□□ 0.35
SPTSSA-201ENST00000298130 IGLV4-60A0A075B6I1 120 aa17.24■□□□□ 0.35
SPTSSA-201ENST00000298130 TRGV4A0A0C4DH28 118 aa17.23■□□□□ 0.35
SPTSSA-201ENST00000298130 LINC01006Q8NI28 216 aa17.23■□□□□ 0.35
SPTSSA-201ENST00000298130 NHLRC4P0CG21 123 aaPredicted RBP17.22■□□□□ 0.35
SPTSSA-201ENST00000298130 LRRC75A-AS1Q8N1F1 130 aa17.22■□□□□ 0.35
SPTSSA-201ENST00000298130 FAM218AQ96MZ4 157 aa17.22■□□□□ 0.35
SPTSSA-201ENST00000298130 CSDC2Q9Y534 153 aaKnown RBP17.21■□□□□ 0.35
SPTSSA-201ENST00000298130 C11orf68Q9H3H3 251 aaKnown RBP17.2■□□□□ 0.34
SPTSSA-201ENST00000298130 COX7A2LO14548 114 aa17.19■□□□□ 0.34
SPTSSA-201ENST00000298130 DEFB130BP0DP73 79 aa17.19■□□□□ 0.34
SPTSSA-201ENST00000298130 DEFB130AP0DP74 79 aa17.19■□□□□ 0.34
SPTSSA-201ENST00000298130 MIR7-3HGQ8N6C7 128 aa17.19■□□□□ 0.34
SPTSSA-201ENST00000298130 CHCHD5Q9BSY4 110 aa17.19■□□□□ 0.34
SPTSSA-201ENST00000298130 Q9HAA7 133 aa17.19■□□□□ 0.34
SPTSSA-201ENST00000298130 LINC01600Q96MT4 127 aa17.18■□□□□ 0.34
SPTSSA-201ENST00000298130 C5orf38Q86SI9 138 aa17.18■□□□□ 0.34
SPTSSA-201ENST00000298130 NDUFV3P56181 108 aaKnown RBP17.17■□□□□ 0.34
SPTSSA-201ENST00000298130 TMEM86BQ8N661 226 aa17.17■□□□□ 0.34
SPTSSA-201ENST00000298130 SHISA2Q6UWI4 295 aa17.17■□□□□ 0.34
SPTSSA-201ENST00000298130 FAM19A3Q7Z5A8 133 aa17.17■□□□□ 0.34
SPTSSA-201ENST00000298130 C19orf73Q9NVV2 129 aa17.16■□□□□ 0.34
SPTSSA-201ENST00000298130 C16orf74Q96GX8 76 aa17.16■□□□□ 0.34
SPTSSA-201ENST00000298130 PFN2P35080 140 aa17.15■□□□□ 0.34
SPTSSA-201ENST00000298130 COX7B2Q8TF08 81 aa17.15■□□□□ 0.34
SPTSSA-201ENST00000298130 A0A096LPF7 62 aa17.14■□□□□ 0.33
SPTSSA-201ENST00000298130 LINC00158P58513 81 aa17.14■□□□□ 0.33
SPTSSA-201ENST00000298130 B5MCH6 92 aa17.14■□□□□ 0.33
SPTSSA-201ENST00000298130 ANK3Q12955 4377 aaKnown RBP17.14■□□□□ 0.33
SPTSSA-201ENST00000298130 LINC00337Q8N6G1 96 aa17.13■□□□□ 0.33
SPTSSA-201ENST00000298130 CSNK1G2-AS1Q8NCQ2 148 aa17.13■□□□□ 0.33
SPTSSA-201ENST00000298130 CLPSL2Q6UWE3 100 aa17.13■□□□□ 0.33
SPTSSA-201ENST00000298130 HIVEP2P31629 2446 aa17.13■□□□□ 0.33
SPTSSA-201ENST00000298130 SS18L2Q9UHA2 77 aa17.12■□□□□ 0.33
SPTSSA-201ENST00000298130 FHL2Q14192 279 aa17.12■□□□□ 0.33
SPTSSA-201ENST00000298130 CCDC179H3BU77 68 aa17.11■□□□□ 0.33
SPTSSA-201ENST00000298130 BAALC-AS2P0C853 105 aa17.11■□□□□ 0.33
SPTSSA-201ENST00000298130 NOTCH2Q04721 2471 aa17.11■□□□□ 0.33
SPTSSA-201ENST00000298130 PDZD2O15018 2839 aa17.11■□□□□ 0.33
SPTSSA-201ENST00000298130 IGLV1-51P01701 117 aa17.11■□□□□ 0.33
SPTSSA-201ENST00000298130 VWFP04275 2813 aa17.11■□□□□ 0.33
SPTSSA-201ENST00000298130 IGKV2-28A0A075B6P5 120 aa17.1■□□□□ 0.33
SPTSSA-201ENST00000298130 IGKV2D-28P01615 120 aa17.1■□□□□ 0.33
SPTSSA-201ENST00000298130 HERV-K104P63124 156 aa17.1■□□□□ 0.33
SPTSSA-201ENST00000298130 SND1-IT1Q9HBX3 110 aa17.1■□□□□ 0.33
SPTSSA-201ENST00000298130 TRBV6-8A0A0A6YYG3 113 aa17.1■□□□□ 0.33
SPTSSA-201ENST00000298130 TRBV6-4A0A1B0GX49 114 aa17.1■□□□□ 0.33
SPTSSA-201ENST00000298130 CRPP02741 224 aa17.07■□□□□ 0.32
SPTSSA-201ENST00000298130 KRTAP1-1Q07627 177 aa17.07■□□□□ 0.32
SPTSSA-201ENST00000298130 C22orf24Q9Y442 160 aa17.07■□□□□ 0.32
SPTSSA-201ENST00000298130 DEFB121Q5J5C9 76 aa17.06■□□□□ 0.32
SPTSSA-201ENST00000298130 IGHV3OR16-9A0A0B4J2B5 98 aa17.06■□□□□ 0.32
SPTSSA-201ENST00000298130 XCL1P47992 114 aa17.06■□□□□ 0.32
SPTSSA-201ENST00000298130 SMCR5Q8TEV8 140 aa17.06■□□□□ 0.32
SPTSSA-201ENST00000298130 COPS9Q8WXC6 57 aa17.06■□□□□ 0.32
SPTSSA-201ENST00000298130 ATP5G1P05496 136 aa17.05■□□□□ 0.32
SPTSSA-201ENST00000298130 FASNP49327 2511 aaKnown RBP17.05■□□□□ 0.32
SPTSSA-201ENST00000298130 CCL18P55774 89 aa17.05■□□□□ 0.32
SPTSSA-201ENST00000298130 SMR3AQ99954 134 aa17.05■□□□□ 0.32
SPTSSA-201ENST00000298130 OVOL2Q9BRP0 275 aa17.04■□□□□ 0.32
SPTSSA-201ENST00000298130 A0A087WYN8 130 aa17.04■□□□□ 0.32
SPTSSA-201ENST00000298130 SMIM11BQ8TCY0 68 aa17.03■□□□□ 0.32
SPTSSA-201ENST00000298130 DEFB4AO15263 64 aa17.02■□□□□ 0.32
SPTSSA-201ENST00000298130 C9orf129Q5T035 196 aaKnown RBP17.02■□□□□ 0.32
SPTSSA-201ENST00000298130 GYPEP15421 78 aa17.01■□□□□ 0.31
SPTSSA-201ENST00000298130 HELZ2Q9BYK8 2649 aaKnown RBP17.01■□□□□ 0.31
SPTSSA-201ENST00000298130 C3orf56Q8N813 242 aa17■□□□□ 0.31
SPTSSA-201ENST00000298130 OR13C6PQ8NH95 151 aa17■□□□□ 0.31
SPTSSA-201ENST00000298130 PAX4O43316 350 aa17■□□□□ 0.31
SPTSSA-201ENST00000298130 TRAV13-2A0A0B4J235 113 aa17■□□□□ 0.31
SPTSSA-201ENST00000298130 TRACP01848 142 aa17■□□□□ 0.31
SPTSSA-201ENST00000298130 FAM240AA0A1B0GVK7 77 aa16.99■□□□□ 0.31
SPTSSA-201ENST00000298130 RNASE1P07998 156 aaKnown RBP16.99■□□□□ 0.31
SPTSSA-201ENST00000298130 SPATA3Q8NHX4 192 aa16.99■□□□□ 0.31
SPTSSA-201ENST00000298130 LINC00959A0A1B0GUT2 108 aa16.98■□□□□ 0.31
SPTSSA-201ENST00000298130 Q6Q795 121 aa16.98■□□□□ 0.31
SPTSSA-201ENST00000298130 Q8N3U1 123 aa16.98■□□□□ 0.31
SPTSSA-201ENST00000298130 C6orf226Q5I0X4 101 aa16.98■□□□□ 0.31
SPTSSA-201ENST00000298130 GAGE2AQ6NT46 116 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 6.8 ms