RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 TMEM243Q9BU79 118 aa11.79□□□□□ -0.52
VPS54-201ENST00000272322 ICOSQ9Y6W8 199 aa11.79□□□□□ -0.52
VPS54-201ENST00000272322 ZFAND6Q6FIF0 208 aa11.79□□□□□ -0.52
VPS54-201ENST00000272322 PKD1L1Q8TDX9 2849 aa11.79□□□□□ -0.52
VPS54-201ENST00000272322 A0A1B0GV72 72 aa11.79□□□□□ -0.52
VPS54-201ENST00000272322 J3QKU1 62 aa11.79□□□□□ -0.52
VPS54-201ENST00000272322 HTN3P15516 51 aa11.78□□□□□ -0.52
VPS54-201ENST00000272322 KRTAP10-3P60369 221 aa11.78□□□□□ -0.52
VPS54-201ENST00000272322 CIRBPQ14011 172 aaKnown RBP11.78□□□□□ -0.52
VPS54-201ENST00000272322 LINC01620Q4KN68 170 aa11.78□□□□□ -0.52
VPS54-201ENST00000272322 CDC42SE2Q9NRR3 84 aa11.78□□□□□ -0.52
VPS54-201ENST00000272322 TRAV4A0A0B4J268 109 aa11.78□□□□□ -0.52
VPS54-201ENST00000272322 IGLV1-51P01701 117 aa11.78□□□□□ -0.52
VPS54-201ENST00000272322 XGP55808 180 aa11.78□□□□□ -0.52
VPS54-201ENST00000272322 PPDPFLQ8WWR9 84 aa11.78□□□□□ -0.52
VPS54-201ENST00000272322 TRAV25A0A0B4J276 109 aa11.77□□□□□ -0.52
VPS54-201ENST00000272322 PLAC8L1A1L4L8 177 aa11.77□□□□□ -0.52
VPS54-201ENST00000272322 SMIM1B2RUZ4 78 aa11.77□□□□□ -0.52
VPS54-201ENST00000272322 HERVK_113P63121 156 aa11.77□□□□□ -0.53
VPS54-201ENST00000272322 A0A0B4J2C4 111 aa11.77□□□□□ -0.53
VPS54-201ENST00000272322 SOSTDC1Q6X4U4 206 aa11.77□□□□□ -0.53
VPS54-201ENST00000272322 C2orf82Q6UX34 121 aa11.76□□□□□ -0.53
VPS54-201ENST00000272322 INAFM1C9JVW0 142 aa11.76□□□□□ -0.53
VPS54-201ENST00000272322 RNASE1P07998 156 aaKnown RBP11.76□□□□□ -0.53
VPS54-201ENST00000272322 CDIP1Q9H305 208 aa11.76□□□□□ -0.53
VPS54-201ENST00000272322 ATXN8Q156A1 80 aa11.76□□□□□ -0.53
VPS54-201ENST00000272322 C19orf73Q9NVV2 129 aa11.76□□□□□ -0.53
VPS54-201ENST00000272322 FBN1P35555 2871 aaKnown RBP11.75□□□□□ -0.53
VPS54-201ENST00000272322 XCL1P47992 114 aa11.75□□□□□ -0.53
VPS54-201ENST00000272322 DAZ2Q13117 558 aaKnown RBP11.75□□□□□ -0.53
VPS54-201ENST00000272322 DAZ4Q86SG3 579 aaKnown RBP11.75□□□□□ -0.53
VPS54-201ENST00000272322 DAZ3Q9NR90 486 aaKnown RBP11.75□□□□□ -0.53
VPS54-201ENST00000272322 IGLV10-54A0A075B6I4 117 aa11.75□□□□□ -0.53
VPS54-201ENST00000272322 DEFB135Q30KP9 77 aa11.75□□□□□ -0.53
VPS54-201ENST00000272322 Q8N3U1 123 aa11.75□□□□□ -0.53
VPS54-201ENST00000272322 LINC00308Q8TCZ7 52 aa11.75□□□□□ -0.53
VPS54-201ENST00000272322 COX6CP09669 75 aa11.74□□□□□ -0.53
VPS54-201ENST00000272322 LINC00158P58513 81 aa11.74□□□□□ -0.53
VPS54-201ENST00000272322 C16orf74Q96GX8 76 aa11.74□□□□□ -0.53
VPS54-201ENST00000272322 EDA2RQ9HAV5 297 aa11.74□□□□□ -0.53
VPS54-201ENST00000272322 GYPEP15421 78 aa11.73□□□□□ -0.53
VPS54-201ENST00000272322 NBEAL1Q6ZS30 2694 aa11.73□□□□□ -0.53
VPS54-201ENST00000272322 LY6G6DO95868 133 aa11.72□□□□□ -0.53
VPS54-201ENST00000272322 SPATA25Q9BR10 227 aa11.72□□□□□ -0.53
VPS54-201ENST00000272322 NDUFA1O15239 70 aa11.72□□□□□ -0.53
VPS54-201ENST00000272322 TIRAPP58753 221 aa11.72□□□□□ -0.53
VPS54-201ENST00000272322 TRBV10-1A0A0K0K1A3 114 aa11.71□□□□□ -0.53
VPS54-201ENST00000272322 HILS1P60008 231 aa11.71□□□□□ -0.53
VPS54-201ENST00000272322 FHL2Q14192 279 aa11.71□□□□□ -0.53
VPS54-201ENST00000272322 MIR7-3HGQ8N6C7 128 aa11.71□□□□□ -0.54
VPS54-201ENST00000272322 CSNK1G2-AS1Q8NCQ2 148 aa11.7□□□□□ -0.54
VPS54-201ENST00000272322 CRYBA4P53673 196 aa11.7□□□□□ -0.54
VPS54-201ENST00000272322 IL17DQ8TAD2 202 aa11.7□□□□□ -0.54
VPS54-201ENST00000272322 SPANXDQ9BXN6 97 aa11.7□□□□□ -0.54
VPS54-201ENST00000272322 SPANXCQ9NY87 97 aa11.7□□□□□ -0.54
VPS54-201ENST00000272322 H7C423 109 aa11.69□□□□□ -0.54
VPS54-201ENST00000272322 TEX29Q8N6K0 151 aa11.69□□□□□ -0.54
VPS54-201ENST00000272322 Q9HAA7 133 aa11.69□□□□□ -0.54
VPS54-201ENST00000272322 TRBV6-8A0A0A6YYG3 113 aa11.68□□□□□ -0.54
VPS54-201ENST00000272322 KMT2BQ9UMN6 2715 aaPredicted RBP11.68□□□□□ -0.54
VPS54-201ENST00000272322 OR13C6PQ8NH95 151 aa11.68□□□□□ -0.54
VPS54-201ENST00000272322 TRBV30A0A0K0K1B3 111 aa11.68□□□□□ -0.54
VPS54-201ENST00000272322 FAM222AQ5U5X8 452 aa11.68□□□□□ -0.54
VPS54-201ENST00000272322 F5H768 121 aa11.67□□□□□ -0.54
VPS54-201ENST00000272322 LINC00526Q96FQ7 95 aa11.67□□□□□ -0.54
VPS54-201ENST00000272322 IGLV5-39A0A0G2JS06 123 aa11.66□□□□□ -0.54
VPS54-201ENST00000272322 SBSPONQ8IVN8 264 aa11.66□□□□□ -0.54
VPS54-201ENST00000272322 CKS1BP61024 79 aa11.66□□□□□ -0.54
VPS54-201ENST00000272322 TTC32Q5I0X7 151 aa11.66□□□□□ -0.54
VPS54-201ENST00000272322 IGLV5-45A0A087WSX0 123 aa11.65□□□□□ -0.54
VPS54-201ENST00000272322 C6orf226Q5I0X4 101 aa11.65□□□□□ -0.54
VPS54-201ENST00000272322 COL6A5A8TX70 2615 aa11.65□□□□□ -0.54
VPS54-201ENST00000272322 TRBV10-2A0A0K0K1G8 114 aa11.65□□□□□ -0.54
VPS54-201ENST00000272322 COX7B2Q8TF08 81 aa11.65□□□□□ -0.54
VPS54-201ENST00000272322 UBE2WQ96B02 151 aa11.65□□□□□ -0.54
VPS54-201ENST00000272322 ATP6V0E2Q8NHE4 81 aa11.65□□□□□ -0.55
VPS54-201ENST00000272322 TRBV6-4A0A1B0GX49 114 aa11.64□□□□□ -0.55
VPS54-201ENST00000272322 PAX4O43316 350 aa11.64□□□□□ -0.55
VPS54-201ENST00000272322 ATP5G1P05496 136 aa11.64□□□□□ -0.55
VPS54-201ENST00000272322 PRR3P79522 188 aaKnown RBP11.64□□□□□ -0.55
VPS54-201ENST00000272322 C16orf95Q9H693 158 aa11.63□□□□□ -0.55
VPS54-201ENST00000272322 TRAV8-4A0A0B4J246 113 aa11.62□□□□□ -0.55
VPS54-201ENST00000272322 SND1-IT1Q9HBX3 110 aa11.62□□□□□ -0.55
VPS54-201ENST00000272322 CLUHP3Q96NS8 147 aa11.62□□□□□ -0.55
VPS54-201ENST00000272322 FAM218AQ96MZ4 157 aa11.61□□□□□ -0.55
VPS54-201ENST00000272322 TRAV26-1A0A087WT03 109 aa11.61□□□□□ -0.55
VPS54-201ENST00000272322 IFITM1P13164 125 aa11.61□□□□□ -0.55
VPS54-201ENST00000272322 LINC00269Q8N2A0 174 aa11.61□□□□□ -0.55
VPS54-201ENST00000272322 LST1O00453 97 aa11.6□□□□□ -0.55
VPS54-201ENST00000272322 TENM3Q9P273 2699 aa11.6□□□□□ -0.55
VPS54-201ENST00000272322 C9orf116Q5BN46 136 aaPredicted RBP11.6□□□□□ -0.55
VPS54-201ENST00000272322 LINC00337Q8N6G1 96 aa11.6□□□□□ -0.55
VPS54-201ENST00000272322 ANGP03950 147 aaKnown RBP11.59□□□□□ -0.55
VPS54-201ENST00000272322 OVOL2Q9BRP0 275 aa11.59□□□□□ -0.55
VPS54-201ENST00000272322 CSDC2Q9Y534 153 aaKnown RBP11.59□□□□□ -0.55
VPS54-201ENST00000272322 CMC4P56277 68 aaPredicted RBP11.59□□□□□ -0.55
VPS54-201ENST00000272322 LINC00959A0A1B0GUT2 108 aa11.58□□□□□ -0.56
VPS54-201ENST00000272322 SNCGO76070 127 aa11.58□□□□□ -0.56
VPS54-201ENST00000272322 X6R8D5 127 aa11.58□□□□□ -0.56
VPS54-201ENST00000272322 IGHV3OR16-9A0A0B4J2B5 98 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms