RNA–Protein interactions for RNA: ENST00000623007.3

LDB3-208, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best) BASIC

Gene LDB3, Length 1,664 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-208ENST00000623007 SPART-AS1P0CW21 52 aa11.57□□□□□ -0.56
LDB3-208ENST00000623007 ZNF22P17026 224 aaPredicted RBP11.57□□□□□ -0.56
LDB3-208ENST00000623007 HERVK_113P63121 156 aa11.57□□□□□ -0.56
LDB3-208ENST00000623007 OPRPNQ99935 248 aaPredicted RBP11.57□□□□□ -0.56
LDB3-208ENST00000623007 GEMIN7Q9H840 131 aaKnown RBP11.57□□□□□ -0.56
LDB3-208ENST00000623007 TP73-AS1Q9UF72 201 aa11.57□□□□□ -0.56
LDB3-208ENST00000623007 COX11Q9Y6N1 276 aa11.57□□□□□ -0.56
LDB3-208ENST00000623007 J3QQQ9 107 aa11.56□□□□□ -0.56
LDB3-208ENST00000623007 FAM222AQ5U5X8 452 aa11.56□□□□□ -0.56
LDB3-208ENST00000623007 SCGB1D4Q6XE38 83 aa11.56□□□□□ -0.56
LDB3-208ENST00000623007 A0A0J9YXV3 536 aa11.55□□□□□ -0.56
LDB3-208ENST00000623007 SH2D6Q7Z4S9 175 aa11.55□□□□□ -0.56
LDB3-208ENST00000623007 CEND1Q8N111 149 aa11.55□□□□□ -0.56
LDB3-208ENST00000623007 MAPKAPK5-AS1Q8N8E1 139 aa11.55□□□□□ -0.56
LDB3-208ENST00000623007 TRBV6-8A0A0A6YYG3 113 aa11.55□□□□□ -0.56
LDB3-208ENST00000623007 IGHV4-28A0A0C4DH34 117 aa11.55□□□□□ -0.56
LDB3-208ENST00000623007 TMEM238LA0A1B0GVL6 79 aa11.55□□□□□ -0.56
LDB3-208ENST00000623007 A6NJY4 79 aa11.55□□□□□ -0.56
LDB3-208ENST00000623007 UBE2D1P51668 147 aa11.55□□□□□ -0.56
LDB3-208ENST00000623007 DAD1P61803 113 aa11.55□□□□□ -0.56
LDB3-208ENST00000623007 NTM-AS1Q6ZSK4 140 aa11.55□□□□□ -0.56
LDB3-208ENST00000623007 Q6ZUT4 128 aa11.55□□□□□ -0.56
LDB3-208ENST00000623007 IGLV5-45A0A087WSX0 123 aa11.54□□□□□ -0.56
LDB3-208ENST00000623007 ATP5G1P05496 136 aa11.54□□□□□ -0.56
LDB3-208ENST00000623007 Q8NAQ8 132 aa11.54□□□□□ -0.56
LDB3-208ENST00000623007 FAM104AQ969W3 186 aa11.54□□□□□ -0.56
LDB3-208ENST00000623007 HIST1H4GQ99525 98 aa11.54□□□□□ -0.56
LDB3-208ENST00000623007 KRTAP21-3Q3LHN1 58 aa11.53□□□□□ -0.56
LDB3-208ENST00000623007 ATP6V0E2Q8NHE4 81 aa11.53□□□□□ -0.56
LDB3-208ENST00000623007 SPANXB1Q9NS25 103 aaPredicted RBP11.53□□□□□ -0.56
LDB3-208ENST00000623007 TRAV26-1A0A087WT03 109 aa11.52□□□□□ -0.56
LDB3-208ENST00000623007 IGHV1-58A0A0C4DH39 117 aa11.52□□□□□ -0.56
LDB3-208ENST00000623007 GCSHP23434 173 aa11.52□□□□□ -0.56
LDB3-208ENST00000623007 PTTG1IPP53801 180 aa11.52□□□□□ -0.56
LDB3-208ENST00000623007 CEMP1Q6PRD7 247 aaPredicted RBP11.52□□□□□ -0.56
LDB3-208ENST00000623007 TTTY13Q9BZ97 58 aa11.52□□□□□ -0.56
LDB3-208ENST00000623007 CDC42SE2Q9NRR3 84 aa11.52□□□□□ -0.56
LDB3-208ENST00000623007 NIPBLQ6KC79 2804 aaeCLIP11.52□□□□□ -0.56
LDB3-208ENST00000623007 PAX4O43316 350 aa11.51□□□□□ -0.57
LDB3-208ENST00000623007 SMIM13P0DJ93 91 aa11.51□□□□□ -0.57
LDB3-208ENST00000623007 GYPEP15421 78 aa11.51□□□□□ -0.57
LDB3-208ENST00000623007 TAX1BP3O14907 124 aa11.5□□□□□ -0.57
LDB3-208ENST00000623007 OXLD1Q5BKU9 147 aa11.5□□□□□ -0.57
LDB3-208ENST00000623007 LINC00469Q8N7U9 141 aa11.5□□□□□ -0.57
LDB3-208ENST00000623007 SRSF9Q13242 221 aaKnown RBP eCLIP11.49□□□□□ -0.57
LDB3-208ENST00000623007 PRIMA1Q86XR5 153 aa11.49□□□□□ -0.57
LDB3-208ENST00000623007 TMEM238C9JI98 176 aa11.49□□□□□ -0.57
LDB3-208ENST00000623007 A0A0J9YY99 117 aa11.48□□□□□ -0.57
LDB3-208ENST00000623007 LOC100131303A0A0U1RQF7 123 aa11.48□□□□□ -0.57
LDB3-208ENST00000623007 A0A1B0GUV1 79 aa11.48□□□□□ -0.57
LDB3-208ENST00000623007 CCL25O15444 150 aa11.48□□□□□ -0.57
LDB3-208ENST00000623007 IGHV3-30-3P0DP02 117 aa11.48□□□□□ -0.57
LDB3-208ENST00000623007 VSIG2Q96IQ7 327 aa11.48□□□□□ -0.57
LDB3-208ENST00000623007 CHCHD5Q9BSY4 110 aa11.48□□□□□ -0.57
LDB3-208ENST00000623007 JMJD1CQ15652 2540 aa11.48□□□□□ -0.57
LDB3-208ENST00000623007 Q6ZVH6 145 aa11.47□□□□□ -0.57
LDB3-208ENST00000623007 C9orf118A6NHY6 69 aa11.46□□□□□ -0.57
LDB3-208ENST00000623007 MRPL23Q16540 153 aaKnown RBP11.46□□□□□ -0.57
LDB3-208ENST00000623007 KRTAP10-11P60412 298 aa11.46□□□□□ -0.58
LDB3-208ENST00000623007 RNASE13Q5GAN3 156 aaKnown RBP11.46□□□□□ -0.58
LDB3-208ENST00000623007 LINC00242Q5T6M2 205 aa11.46□□□□□ -0.58
LDB3-208ENST00000623007 C11orf68Q9H3H3 251 aaKnown RBP11.46□□□□□ -0.58
LDB3-208ENST00000623007 FXYD2P54710 66 aa11.45□□□□□ -0.58
LDB3-208ENST00000623007 ZFAND6Q6FIF0 208 aa11.45□□□□□ -0.58
LDB3-208ENST00000623007 H3BNG1 76 aa11.44□□□□□ -0.58
LDB3-208ENST00000623007 TSPEAR-AS2P59090 65 aa11.44□□□□□ -0.58
LDB3-208ENST00000623007 VAMP3Q15836 100 aa11.44□□□□□ -0.58
LDB3-208ENST00000623007 ATRQ13535 2644 aa11.44□□□□□ -0.58
LDB3-208ENST00000623007 A0A1B0GWB2 263 aa11.43□□□□□ -0.58
LDB3-208ENST00000623007 UBE2V1Q13404 147 aa11.43□□□□□ -0.58
LDB3-208ENST00000623007 COPS9Q8WXC6 57 aa11.43□□□□□ -0.58
LDB3-208ENST00000623007 CDKN2A-AS1Q9UH64 79 aa11.43□□□□□ -0.58
LDB3-208ENST00000623007 IGLV5-39A0A0G2JS06 123 aa11.43□□□□□ -0.58
LDB3-208ENST00000623007 TIMM17BO60830 172 aa11.43□□□□□ -0.58
LDB3-208ENST00000623007 GAGE6Q13070 117 aa11.43□□□□□ -0.58
LDB3-208ENST00000623007 SFTA2Q6UW10 78 aa11.43□□□□□ -0.58
LDB3-208ENST00000623007 GTF2H5Q6ZYL4 71 aa11.43□□□□□ -0.58
LDB3-208ENST00000623007 NHP2Q9NX24 153 aaKnown RBP11.43□□□□□ -0.58
LDB3-208ENST00000623007 NDUFA12Q9UI09 145 aa11.43□□□□□ -0.58
LDB3-208ENST00000623007 ICOSQ9Y6W8 199 aa11.43□□□□□ -0.58
LDB3-208ENST00000623007 TRAV13-1A0A0B4J241 112 aa11.42□□□□□ -0.58
LDB3-208ENST00000623007 F5H768 121 aa11.42□□□□□ -0.58
LDB3-208ENST00000623007 RPL24P83731 157 aaKnown RBP11.42□□□□□ -0.58
LDB3-208ENST00000623007 CIRBPQ14011 172 aaKnown RBP11.42□□□□□ -0.58
LDB3-208ENST00000623007 SAMD5Q5TGI4 173 aa11.42□□□□□ -0.58
LDB3-208ENST00000623007 DNHD1Q96M86 4753 aa11.42□□□□□ -0.58
LDB3-208ENST00000623007 NOTCH3Q9UM47 2321 aa11.41□□□□□ -0.58
LDB3-208ENST00000623007 NDUFA1O15239 70 aa11.4□□□□□ -0.58
LDB3-208ENST00000623007 SPINK8P0C7L1 97 aa11.4□□□□□ -0.58
LDB3-208ENST00000623007 C12orf74Q32Q52 190 aa11.4□□□□□ -0.58
LDB3-208ENST00000623007 A0A0J9YXY3 114 aa11.4□□□□□ -0.59
LDB3-208ENST00000623007 DEFB4AO15263 64 aa11.4□□□□□ -0.59
LDB3-208ENST00000623007 HERV-K104P63124 156 aa11.4□□□□□ -0.59
LDB3-208ENST00000623007 CELA1Q9UNI1 258 aa11.4□□□□□ -0.59
LDB3-208ENST00000623007 IGHV3-64A0A075B6Q5 118 aa11.39□□□□□ -0.59
LDB3-208ENST00000623007 TRAV8-3A0A0A6YYJ7 113 aa11.39□□□□□ -0.59
LDB3-208ENST00000623007 IGHV3-30P01768 117 aa11.39□□□□□ -0.59
LDB3-208ENST00000623007 IGHV3-30-5P0DP03 117 aa11.39□□□□□ -0.59
LDB3-208ENST00000623007 FABP2P12104 132 aa11.39□□□□□ -0.59
LDB3-208ENST00000623007 LINC01561Q8N1V8 128 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 141.7 ms