RNA–Protein interactions for RNA: ENST00000622226.1

PDLIM2-220, Transcript of PDZ and LIM domain 2, humanhuman

Gene PDLIM2, Length 6,559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-220ENST00000622226 CRYGDP07320 174 aa11.42□□□□□ -0.58
PDLIM2-220ENST00000622226 SMR3AQ99954 134 aa11.42□□□□□ -0.58
PDLIM2-220ENST00000622226 LST1O00453 97 aa11.42□□□□□ -0.58
PDLIM2-220ENST00000622226 PRR14LQ5THK1 2151 aa11.42□□□□□ -0.58
PDLIM2-220ENST00000622226 IGLV2-18A0A075B6J9 118 aa11.41□□□□□ -0.58
PDLIM2-220ENST00000622226 LINC01548A6NM66 108 aa11.41□□□□□ -0.58
PDLIM2-220ENST00000622226 FAM222AQ5U5X8 452 aa11.41□□□□□ -0.58
PDLIM2-220ENST00000622226 WFDC10AQ9H1F0 79 aa11.41□□□□□ -0.58
PDLIM2-220ENST00000622226 LY6G6DO95868 133 aa11.41□□□□□ -0.58
PDLIM2-220ENST00000622226 PRORYQ9H606 182 aa11.41□□□□□ -0.58
PDLIM2-220ENST00000622226 CCDC140Q96MF4 163 aa11.41□□□□□ -0.58
PDLIM2-220ENST00000622226 LOC107984640A0A0U1RRK4 108 aa11.41□□□□□ -0.58
PDLIM2-220ENST00000622226 C4orf3Q8WVX3 66 aa11.41□□□□□ -0.58
PDLIM2-220ENST00000622226 GPR179Q6PRD1 2367 aa11.41□□□□□ -0.58
PDLIM2-220ENST00000622226 LYRM9A8MSI8 78 aa11.4□□□□□ -0.58
PDLIM2-220ENST00000622226 RPL37AP8A6NKH3 93 aa11.4□□□□□ -0.58
PDLIM2-220ENST00000622226 CRIP1P50238 77 aa11.4□□□□□ -0.58
PDLIM2-220ENST00000622226 RNF185Q96GF1 192 aa11.4□□□□□ -0.59
PDLIM2-220ENST00000622226 IGLV1-47P01700 117 aa11.39□□□□□ -0.59
PDLIM2-220ENST00000622226 BEAN1Q3B7T3 259 aa11.39□□□□□ -0.59
PDLIM2-220ENST00000622226 KRTAP27-1Q3LI81 207 aa11.39□□□□□ -0.59
PDLIM2-220ENST00000622226 SIP14410 1827 aa11.39□□□□□ -0.59
PDLIM2-220ENST00000622226 IGLV9-49A0A0B4J1Y8 123 aa11.39□□□□□ -0.59
PDLIM2-220ENST00000622226 C11orf45Q8TAV5 145 aa11.39□□□□□ -0.59
PDLIM2-220ENST00000622226 LINC00208Q96KT6 92 aa11.38□□□□□ -0.59
PDLIM2-220ENST00000622226 PCDH15Q96QU1 1955 aa11.38□□□□□ -0.59
PDLIM2-220ENST00000622226 ARHGAP32A7KAX9 2087 aa11.38□□□□□ -0.59
PDLIM2-220ENST00000622226 WISP2O76076 250 aa11.38□□□□□ -0.59
PDLIM2-220ENST00000622226 LY6LH3BQJ8 138 aa11.37□□□□□ -0.59
PDLIM2-220ENST00000622226 M0QY20 66 aa11.37□□□□□ -0.59
PDLIM2-220ENST00000622226 KIR2DL5BQ8NHK3 375 aa11.36□□□□□ -0.59
PDLIM2-220ENST00000622226 Q6JHZ5 121 aa11.35□□□□□ -0.59
PDLIM2-220ENST00000622226 TRBV6-8A0A0A6YYG3 113 aa11.35□□□□□ -0.59
PDLIM2-220ENST00000622226 C14orf177Q52M58 125 aa11.34□□□□□ -0.59
PDLIM2-220ENST00000622226 MYCNOSP40205 109 aa11.34□□□□□ -0.59
PDLIM2-220ENST00000622226 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.34□□□□□ -0.59
PDLIM2-220ENST00000622226 RETNLBQ9BQ08 111 aa11.34□□□□□ -0.59
PDLIM2-220ENST00000622226 TRAV7A0A075B6U4 112 aa11.34□□□□□ -0.59
PDLIM2-220ENST00000622226 TRBV7-6A0A0J9YX20 115 aa11.34□□□□□ -0.59
PDLIM2-220ENST00000622226 Q6ZVQ6 151 aa11.34□□□□□ -0.59
PDLIM2-220ENST00000622226 COL4A3Q01955 1670 aa11.33□□□□□ -0.59
PDLIM2-220ENST00000622226 CRIP2P52943 208 aaPredicted RBP11.33□□□□□ -0.59
PDLIM2-220ENST00000622226 PLA2G2AP14555 144 aa11.33□□□□□ -0.6
PDLIM2-220ENST00000622226 X6R8D5 127 aa11.33□□□□□ -0.6
PDLIM2-220ENST00000622226 SYCNQ0VAF6 134 aa11.33□□□□□ -0.6
PDLIM2-220ENST00000622226 PCOTHQ58A44 107 aa11.33□□□□□ -0.6
PDLIM2-220ENST00000622226 YPEL4Q96NS1 127 aa11.33□□□□□ -0.6
PDLIM2-220ENST00000622226 TANC1Q9C0D5 1861 aa11.33□□□□□ -0.6
PDLIM2-220ENST00000622226 GAS8-AS1O95177 125 aa11.32□□□□□ -0.6
PDLIM2-220ENST00000622226 Q6ZSV7 163 aa11.32□□□□□ -0.6
PDLIM2-220ENST00000622226 MRPS36P82909 103 aaKnown RBP11.32□□□□□ -0.6
PDLIM2-220ENST00000622226 ZNF295-AS1Q8N0V1 137 aa11.32□□□□□ -0.6
PDLIM2-220ENST00000622226 A0A1W2PNU3 283 aaPredicted RBP11.32□□□□□ -0.6
PDLIM2-220ENST00000622226 Q6ZSR3 168 aa11.32□□□□□ -0.6
PDLIM2-220ENST00000622226 U3KQK5 164 aa11.32□□□□□ -0.6
PDLIM2-220ENST00000622226 PRYO14603 147 aa11.31□□□□□ -0.6
PDLIM2-220ENST00000622226 PRM2P04554 102 aa11.31□□□□□ -0.6
PDLIM2-220ENST00000622226 ZFHX2Q9C0A1 2572 aaPredicted RBP11.31□□□□□ -0.6
PDLIM2-220ENST00000622226 LOC100131303A0A0U1RQF7 123 aa11.31□□□□□ -0.6
PDLIM2-220ENST00000622226 BRWD1-AS2P59051 145 aa11.31□□□□□ -0.6
PDLIM2-220ENST00000622226 DEFB131BA0A096LNP1 70 aa11.31□□□□□ -0.6
PDLIM2-220ENST00000622226 SPINK1P00995 79 aa11.31□□□□□ -0.6
PDLIM2-220ENST00000622226 MSMPQ1L6U9 139 aa11.3□□□□□ -0.6
PDLIM2-220ENST00000622226 CSDC2Q9Y534 153 aaKnown RBP11.3□□□□□ -0.6
PDLIM2-220ENST00000622226 PRRC2AP48634 2157 aaKnown RBP11.3□□□□□ -0.6
PDLIM2-220ENST00000622226 ESRGQ1W209 222 aa11.3□□□□□ -0.6
PDLIM2-220ENST00000622226 C1orf229Q6ZS94 237 aaPredicted RBP11.3□□□□□ -0.6
PDLIM2-220ENST00000622226 UBE2D4Q9Y2X8 147 aa11.3□□□□□ -0.6
PDLIM2-220ENST00000622226 TSHBP01222 138 aa11.3□□□□□ -0.6
PDLIM2-220ENST00000622226 PLXNA2O75051 1894 aa11.29□□□□□ -0.6
PDLIM2-220ENST00000622226 P0C879 139 aa11.29□□□□□ -0.6
PDLIM2-220ENST00000622226 LINC00482Q8N8I6 264 aa11.29□□□□□ -0.6
PDLIM2-220ENST00000622226 BBC3Q96PG8 261 aaPredicted RBP11.29□□□□□ -0.6
PDLIM2-220ENST00000622226 MUC4Q99102 2169 aa11.29□□□□□ -0.6
PDLIM2-220ENST00000622226 NRACQ8N912 160 aa11.28□□□□□ -0.6
PDLIM2-220ENST00000622226 A6NDX4 124 aa11.28□□□□□ -0.6
PDLIM2-220ENST00000622226 M0R378 163 aa11.28□□□□□ -0.6
PDLIM2-220ENST00000622226 NTM-AS1Q6ZSK4 140 aa11.28□□□□□ -0.6
PDLIM2-220ENST00000622226 NOTCH4Q99466 2003 aa11.27□□□□□ -0.6
PDLIM2-220ENST00000622226 K7EQG2 157 aa11.27□□□□□ -0.6
PDLIM2-220ENST00000622226 DHRS4-AS1Q9P1J3 65 aa11.27□□□□□ -0.6
PDLIM2-220ENST00000622226 Q6ZPA2 131 aa11.27□□□□□ -0.61
PDLIM2-220ENST00000622226 HCFC1P51610 2035 aa11.27□□□□□ -0.61
PDLIM2-220ENST00000622226 TRBV7-7A0A0K0K1E9 115 aa11.27□□□□□ -0.61
PDLIM2-220ENST00000622226 MUC6Q6W4X9 2439 aa11.26□□□□□ -0.61
PDLIM2-220ENST00000622226 ZNF73O43830 326 aaPredicted RBP11.26□□□□□ -0.61
PDLIM2-220ENST00000622226 CRYGAP11844 174 aa11.26□□□□□ -0.61
PDLIM2-220ENST00000622226 SPG11Q96JI7 2443 aa11.26□□□□□ -0.61
PDLIM2-220ENST00000622226 SERTAD4-AS1Q5TG53 156 aa11.26□□□□□ -0.61
PDLIM2-220ENST00000622226 LINC01547P58512 204 aaPredicted RBP11.26□□□□□ -0.61
PDLIM2-220ENST00000622226 UBE2D3P61077 147 aa11.26□□□□□ -0.61
PDLIM2-220ENST00000622226 ODF3Q96PU9 254 aa11.25□□□□□ -0.61
PDLIM2-220ENST00000622226 UBE2D1P51668 147 aa11.25□□□□□ -0.61
PDLIM2-220ENST00000622226 Q8NA96 180 aa11.24□□□□□ -0.61
PDLIM2-220ENST00000622226 FAM208BQ5VWN6 2430 aa11.24□□□□□ -0.61
PDLIM2-220ENST00000622226 TMEM89A2RUT3 159 aa11.24□□□□□ -0.61
PDLIM2-220ENST00000622226 Q8N3U1 123 aa11.24□□□□□ -0.61
PDLIM2-220ENST00000622226 DEFB114Q30KQ6 69 aa11.24□□□□□ -0.61
PDLIM2-220ENST00000622226 LINC00959A0A1B0GUT2 108 aa11.23□□□□□ -0.61
PDLIM2-220ENST00000622226 DENND4CQ5VZ89 1909 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms