RNA–Protein interactions for RNA: ENST00000618327.4

CIITA-213, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CIITA, Length 4,657 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-213ENST00000618327 PRO0255Q9UI72 69 aa10.28□□□□□ -0.76
CIITA-213ENST00000618327 TRBV10-2A0A0K0K1G8 114 aa10.28□□□□□ -0.76
CIITA-213ENST00000618327 P0DMU3 169 aa10.28□□□□□ -0.76
CIITA-213ENST00000618327 FAM231AP0DMU4 169 aa10.28□□□□□ -0.76
CIITA-213ENST00000618327 FAM231CP0DMU5 169 aa10.28□□□□□ -0.76
CIITA-213ENST00000618327 BAALCQ8WXS3 180 aa10.28□□□□□ -0.76
CIITA-213ENST00000618327 MGAQ8IWI9 3026 aa10.28□□□□□ -0.76
CIITA-213ENST00000618327 SMIM9A6NGZ8 99 aa10.28□□□□□ -0.76
CIITA-213ENST00000618327 NDUFC2O95298 119 aa10.28□□□□□ -0.76
CIITA-213ENST00000618327 OPRPNQ99935 248 aaPredicted RBP10.28□□□□□ -0.76
CIITA-213ENST00000618327 RNASE3P12724 160 aaKnown RBP10.27□□□□□ -0.76
CIITA-213ENST00000618327 FUSP35637 526 aaKnown RBP eCLIP10.27□□□□□ -0.76
CIITA-213ENST00000618327 WFDC10AQ9H1F0 79 aa10.27□□□□□ -0.76
CIITA-213ENST00000618327 C16orf95Q9H693 158 aa10.27□□□□□ -0.77
CIITA-213ENST00000618327 SPATA12Q7Z6I5 190 aa10.27□□□□□ -0.77
CIITA-213ENST00000618327 COL27A1Q8IZC6 1860 aaPredicted RBP10.26□□□□□ -0.77
CIITA-213ENST00000618327 RNF185Q96GF1 192 aa10.26□□□□□ -0.77
CIITA-213ENST00000618327 FAM222AQ5U5X8 452 aa10.26□□□□□ -0.77
CIITA-213ENST00000618327 DAND5Q8N907 189 aa10.26□□□□□ -0.77
CIITA-213ENST00000618327 C11orf86A6NJI1 115 aa10.25□□□□□ -0.77
CIITA-213ENST00000618327 HECTD1Q9ULT8 2610 aa10.25□□□□□ -0.77
CIITA-213ENST00000618327 DEFB105AQ8NG35 78 aa10.25□□□□□ -0.77
CIITA-213ENST00000618327 COX7B2Q8TF08 81 aa10.25□□□□□ -0.77
CIITA-213ENST00000618327 ODF3L2Q3SX64 289 aa10.24□□□□□ -0.77
CIITA-213ENST00000618327 RMI2Q96E14 147 aa10.24□□□□□ -0.77
CIITA-213ENST00000618327 CFAP126Q5VTH2 177 aa10.24□□□□□ -0.77
CIITA-213ENST00000618327 U3KQK5 164 aa10.24□□□□□ -0.77
CIITA-213ENST00000618327 LECT2O14960 151 aa10.24□□□□□ -0.77
CIITA-213ENST00000618327 LYRM9A8MSI8 78 aa10.23□□□□□ -0.77
CIITA-213ENST00000618327 JMJD7-PLA2G4BH0Y9G9 81 aa10.23□□□□□ -0.77
CIITA-213ENST00000618327 M0QY20 66 aa10.23□□□□□ -0.77
CIITA-213ENST00000618327 IGHV4-4A0A075B6R2 117 aa10.23□□□□□ -0.77
CIITA-213ENST00000618327 CLEC2BQ92478 149 aa10.23□□□□□ -0.77
CIITA-213ENST00000618327 RNF183Q96D59 192 aa10.23□□□□□ -0.77
CIITA-213ENST00000618327 VSIG2Q96IQ7 327 aa10.23□□□□□ -0.77
CIITA-213ENST00000618327 IGKV2D-24A0A075B6R9 120 aa10.22□□□□□ -0.77
CIITA-213ENST00000618327 NREPQ16612 68 aa10.22□□□□□ -0.77
CIITA-213ENST00000618327 IGLV10-54A0A075B6I4 117 aa10.22□□□□□ -0.77
CIITA-213ENST00000618327 PRB2P02812 416 aaPredicted RBP10.22□□□□□ -0.77
CIITA-213ENST00000618327 Q6ZUT4 128 aa10.22□□□□□ -0.77
CIITA-213ENST00000618327 LINC00643Q86TS7 51 aa10.22□□□□□ -0.77
CIITA-213ENST00000618327 CCL18P55774 89 aa10.22□□□□□ -0.77
CIITA-213ENST00000618327 CNFNQ9BYD5 112 aa10.22□□□□□ -0.77
CIITA-213ENST00000618327 NDUFS5O43920 106 aa10.21□□□□□ -0.77
CIITA-213ENST00000618327 IGLV1-51P01701 117 aa10.21□□□□□ -0.77
CIITA-213ENST00000618327 PRM2P04554 102 aa10.21□□□□□ -0.77
CIITA-213ENST00000618327 CEMP1Q6PRD7 247 aaPredicted RBP10.21□□□□□ -0.77
CIITA-213ENST00000618327 Q8N2B8 174 aa10.21□□□□□ -0.77
CIITA-213ENST00000618327 WFDC9Q8NEX5 89 aa10.21□□□□□ -0.77
CIITA-213ENST00000618327 C9orf85Q96MD7 179 aa10.21□□□□□ -0.77
CIITA-213ENST00000618327 IGHV3-30P01768 117 aa10.21□□□□□ -0.78
CIITA-213ENST00000618327 IGHV3-33P01772 117 aa10.21□□□□□ -0.78
CIITA-213ENST00000618327 IGHV3-30-3P0DP02 117 aa10.21□□□□□ -0.78
CIITA-213ENST00000618327 IGHV3-30-5P0DP03 117 aa10.21□□□□□ -0.78
CIITA-213ENST00000618327 MP68P56378 58 aa10.21□□□□□ -0.78
CIITA-213ENST00000618327 IGHV4-28A0A0C4DH34 117 aa10.21□□□□□ -0.78
CIITA-213ENST00000618327 Q9HAA7 133 aa10.21□□□□□ -0.78
CIITA-213ENST00000618327 NEXN-AS1Q8NBZ9 246 aa10.2□□□□□ -0.78
CIITA-213ENST00000618327 ETDCA0A1B0GVM5 59 aa10.2□□□□□ -0.78
CIITA-213ENST00000618327 PROK1P58294 105 aa10.2□□□□□ -0.78
CIITA-213ENST00000618327 MIFP14174 115 aa10.19□□□□□ -0.78
CIITA-213ENST00000618327 COX8CQ7Z4L0 72 aa10.19□□□□□ -0.78
CIITA-213ENST00000618327 UBE2BP63146 152 aa10.19□□□□□ -0.78
CIITA-213ENST00000618327 TCL1BO95988 128 aa10.18□□□□□ -0.78
CIITA-213ENST00000618327 C11orf45Q8TAV5 145 aa10.18□□□□□ -0.78
CIITA-213ENST00000618327 NRACQ8N912 160 aa10.18□□□□□ -0.78
CIITA-213ENST00000618327 COX7A2LO14548 114 aa10.18□□□□□ -0.78
CIITA-213ENST00000618327 NDUFV3P56181 108 aaKnown RBP10.18□□□□□ -0.78
CIITA-213ENST00000618327 MT-ATP8P03928 68 aa10.18□□□□□ -0.78
CIITA-213ENST00000618327 CAMK2N2Q96S95 79 aa10.18□□□□□ -0.78
CIITA-213ENST00000618327 CRYGDP07320 174 aa10.17□□□□□ -0.78
CIITA-213ENST00000618327 TRBV6-5A0A0K0K1A5 114 aa10.17□□□□□ -0.78
CIITA-213ENST00000618327 KIR2DL5BQ8NHK3 375 aa10.17□□□□□ -0.78
CIITA-213ENST00000618327 IGHV1-58A0A0C4DH39 117 aa10.17□□□□□ -0.78
CIITA-213ENST00000618327 TRBV27A0A0K0K1C4 114 aa10.17□□□□□ -0.78
CIITA-213ENST00000618327 TRBV6-4A0A1B0GX49 114 aa10.17□□□□□ -0.78
CIITA-213ENST00000618327 OXLD1Q5BKU9 147 aa10.16□□□□□ -0.78
CIITA-213ENST00000618327 FAM110AQ9BQ89 295 aa10.16□□□□□ -0.78
CIITA-213ENST00000618327 LINC00467Q9BRT7 94 aa10.16□□□□□ -0.78
CIITA-213ENST00000618327 MIR7-3HGQ8N6C7 128 aa10.16□□□□□ -0.78
CIITA-213ENST00000618327 GAS8-AS1O95177 125 aa10.16□□□□□ -0.78
CIITA-213ENST00000618327 KLK12Q9UKR0 248 aa10.16□□□□□ -0.78
CIITA-213ENST00000618327 CENPEQ02224 2701 aa10.16□□□□□ -0.78
CIITA-213ENST00000618327 AKAP13Q12802 2813 aa10.15□□□□□ -0.78
CIITA-213ENST00000618327 F8P00451 2351 aa10.15□□□□□ -0.78
CIITA-213ENST00000618327 H3BQ85 93 aa10.15□□□□□ -0.78
CIITA-213ENST00000618327 BRK1Q8WUW1 75 aa10.15□□□□□ -0.78
CIITA-213ENST00000618327 FSHBP01225 129 aa10.14□□□□□ -0.79
CIITA-213ENST00000618327 SPANXB1Q9NS25 103 aaPredicted RBP10.14□□□□□ -0.79
CIITA-213ENST00000618327 RBX1P62877 108 aa10.14□□□□□ -0.79
CIITA-213ENST00000618327 TM2D2Q9BX73 214 aa10.14□□□□□ -0.79
CIITA-213ENST00000618327 VPS13AQ96RL7 3174 aa10.14□□□□□ -0.79
CIITA-213ENST00000618327 UQCRQO14949 82 aa10.13□□□□□ -0.79
CIITA-213ENST00000618327 SPATA25Q9BR10 227 aa10.13□□□□□ -0.79
CIITA-213ENST00000618327 TP73-AS1Q9UF72 201 aa10.13□□□□□ -0.79
CIITA-213ENST00000618327 TMEM256-PLSCR3K7ERE1 68 aa10.13□□□□□ -0.79
CIITA-213ENST00000618327 NDUFB1O75438 58 aa10.13□□□□□ -0.79
CIITA-213ENST00000618327 HIGD2BQ4VC39 106 aa10.13□□□□□ -0.79
CIITA-213ENST00000618327 LAMA1P25391 3075 aa10.13□□□□□ -0.79
CIITA-213ENST00000618327 PIK3CD-AS1Q5SR53 167 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms