RNA–Protein interactions for RNA: ENST00000600031.1

VRK3-218, Transcript of vaccinia related kinase 3, humanhuman

Gene VRK3, Length 2,110 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-218ENST00000600031 GAGE12IP0CL82 117 aa10.81□□□□□ -0.68
VRK3-218ENST00000600031 RHOHQ15669 191 aa10.81□□□□□ -0.68
VRK3-218ENST00000600031 Q6ZSN1 163 aa10.81□□□□□ -0.68
VRK3-218ENST00000600031 H3BMG7 143 aa10.81□□□□□ -0.68
VRK3-218ENST00000600031 GAGE13Q4V321 117 aa10.81□□□□□ -0.68
VRK3-218ENST00000600031 PLEKHB2Q96CS7 222 aa10.81□□□□□ -0.68
VRK3-218ENST00000600031 UBE2D1P51668 147 aa10.8□□□□□ -0.68
VRK3-218ENST00000600031 RPL39P62891 51 aaKnown RBP10.8□□□□□ -0.68
VRK3-218ENST00000600031 WFDC2Q14508 124 aa10.8□□□□□ -0.68
VRK3-218ENST00000600031 SPANXB1Q9NS25 103 aaPredicted RBP10.8□□□□□ -0.68
VRK3-218ENST00000600031 KPRPQ5T749 579 aaPredicted RBP10.79□□□□□ -0.68
VRK3-218ENST00000600031 IGHV4-28A0A0C4DH34 117 aa10.79□□□□□ -0.68
VRK3-218ENST00000600031 RHODO00212 210 aa10.79□□□□□ -0.68
VRK3-218ENST00000600031 DEFB4AO15263 64 aa10.79□□□□□ -0.68
VRK3-218ENST00000600031 IGHV3-53P01767 116 aa10.79□□□□□ -0.68
VRK3-218ENST00000600031 PGPEP1Q9NXJ5 209 aa10.79□□□□□ -0.68
VRK3-218ENST00000600031 TRAV4A0A0B4J268 109 aa10.78□□□□□ -0.68
VRK3-218ENST00000600031 A0A0J9YY99 117 aa10.78□□□□□ -0.68
VRK3-218ENST00000600031 P0DMU3 169 aa10.78□□□□□ -0.68
VRK3-218ENST00000600031 FAM231AP0DMU4 169 aa10.78□□□□□ -0.68
VRK3-218ENST00000600031 FAM231CP0DMU5 169 aa10.78□□□□□ -0.68
VRK3-218ENST00000600031 Q8NAQ8 132 aa10.78□□□□□ -0.68
VRK3-218ENST00000600031 TRGV2A0A075B6R0 118 aa10.78□□□□□ -0.68
VRK3-218ENST00000600031 TMEM170BQ5T4T1 132 aa10.78□□□□□ -0.68
VRK3-218ENST00000600031 NFE4Q86UQ8 179 aa10.78□□□□□ -0.68
VRK3-218ENST00000600031 RETNQ9HD89 108 aa10.78□□□□□ -0.68
VRK3-218ENST00000600031 Q9UF83 564 aa10.78□□□□□ -0.68
VRK3-218ENST00000600031 K7EIL1 84 aa10.77□□□□□ -0.69
VRK3-218ENST00000600031 MIFP14174 115 aa10.77□□□□□ -0.69
VRK3-218ENST00000600031 EDA2RQ9HAV5 297 aa10.77□□□□□ -0.69
VRK3-218ENST00000600031 PRO0461Q9UI25 63 aa10.77□□□□□ -0.69
VRK3-218ENST00000600031 LYRM7Q5U5X0 104 aa10.76□□□□□ -0.69
VRK3-218ENST00000600031 DEFB130BP0DP73 79 aa10.76□□□□□ -0.69
VRK3-218ENST00000600031 DEFB130AP0DP74 79 aa10.76□□□□□ -0.69
VRK3-218ENST00000600031 FAM222AQ5U5X8 452 aa10.76□□□□□ -0.69
VRK3-218ENST00000600031 LINC00612Q8N6U2 182 aa10.76□□□□□ -0.69
VRK3-218ENST00000600031 ZNRF2Q8NHG8 242 aa10.76□□□□□ -0.69
VRK3-218ENST00000600031 I3L3M4 83 aa10.75□□□□□ -0.69
VRK3-218ENST00000600031 SLC25A29Q8N8R3 303 aa10.75□□□□□ -0.69
VRK3-218ENST00000600031 LGALS3P17931 250 aaKnown RBP10.75□□□□□ -0.69
VRK3-218ENST00000600031 C20orf203Q8NBC4 194 aa10.75□□□□□ -0.69
VRK3-218ENST00000600031 DEFB104AQ8WTQ1 72 aa10.75□□□□□ -0.69
VRK3-218ENST00000600031 J3QQQ9 107 aa10.74□□□□□ -0.69
VRK3-218ENST00000600031 TSPAN13O95857 204 aa10.74□□□□□ -0.69
VRK3-218ENST00000600031 ETDBQ3ZM63 59 aa10.74□□□□□ -0.69
VRK3-218ENST00000600031 LYRM9A8MSI8 78 aa10.73□□□□□ -0.69
VRK3-218ENST00000600031 LEPROTO15243 131 aa10.73□□□□□ -0.69
VRK3-218ENST00000600031 IGHV3-30P01768 117 aa10.73□□□□□ -0.69
VRK3-218ENST00000600031 IGHV3-30-5P0DP03 117 aa10.73□□□□□ -0.69
VRK3-218ENST00000600031 TSPEAR-AS2P59090 65 aa10.73□□□□□ -0.69
VRK3-218ENST00000600031 UBE2D3P61077 147 aa10.73□□□□□ -0.69
VRK3-218ENST00000600031 UBE2D2P62837 147 aa10.73□□□□□ -0.69
VRK3-218ENST00000600031 SH2D6Q7Z4S9 175 aa10.73□□□□□ -0.69
VRK3-218ENST00000600031 SBSPONQ8IVN8 264 aa10.73□□□□□ -0.69
VRK3-218ENST00000600031 DNHD1Q96M86 4753 aa10.73□□□□□ -0.69
VRK3-218ENST00000600031 TMEM223A0PJW6 202 aa10.72□□□□□ -0.69
VRK3-218ENST00000600031 APOMO95445 188 aa10.72□□□□□ -0.69
VRK3-218ENST00000600031 DEFB121Q5J5C9 76 aa10.72□□□□□ -0.69
VRK3-218ENST00000600031 AMELXQ99217 191 aa10.72□□□□□ -0.69
VRK3-218ENST00000600031 CELA1Q9UNI1 258 aa10.72□□□□□ -0.69
VRK3-218ENST00000600031 ATP6V0E2Q8NHE4 81 aa10.72□□□□□ -0.69
VRK3-218ENST00000600031 SIGMAR1Q99720 223 aa10.72□□□□□ -0.69
VRK3-218ENST00000600031 GAGE12HA6NDE8 117 aa10.71□□□□□ -0.69
VRK3-218ENST00000600031 SCGB1A1P11684 91 aa10.71□□□□□ -0.69
VRK3-218ENST00000600031 FHL2Q14192 279 aa10.71□□□□□ -0.69
VRK3-218ENST00000600031 TNFRSF18Q9Y5U5 241 aa10.71□□□□□ -0.69
VRK3-218ENST00000600031 TRGV4A0A0C4DH28 118 aa10.7□□□□□ -0.7
VRK3-218ENST00000600031 LOC107984156A0A0G2JMH3 177 aa10.7□□□□□ -0.7
VRK3-218ENST00000600031 TMEM238C9JI98 176 aa10.7□□□□□ -0.7
VRK3-218ENST00000600031 CIDEAO60543 219 aa10.7□□□□□ -0.7
VRK3-218ENST00000600031 ARL17AQ8IVW1 177 aa10.7□□□□□ -0.7
VRK3-218ENST00000600031 SPATA25Q9BR10 227 aa10.7□□□□□ -0.7
VRK3-218ENST00000600031 VCX2Q9H322 139 aa10.7□□□□□ -0.7
VRK3-218ENST00000600031 TRBV20-1A0A075B6N2 111 aa10.7□□□□□ -0.7
VRK3-218ENST00000600031 K7EQD1 137 aa10.7□□□□□ -0.7
VRK3-218ENST00000600031 CFC1BP0CG36 223 aa10.7□□□□□ -0.7
VRK3-218ENST00000600031 CFC1P0CG37 223 aa10.7□□□□□ -0.7
VRK3-218ENST00000600031 PSMB2P49721 201 aa10.7□□□□□ -0.7
VRK3-218ENST00000600031 CRYBA4P53673 196 aa10.7□□□□□ -0.7
VRK3-218ENST00000600031 PYGO1Q9Y3Y4 419 aa10.7□□□□□ -0.7
VRK3-218ENST00000600031 IGLV4-3A0A075B6K6 122 aa10.69□□□□□ -0.7
VRK3-218ENST00000600031 ZNF22P17026 224 aaPredicted RBP10.69□□□□□ -0.7
VRK3-218ENST00000600031 C10orf126Q8N4M7 172 aa10.69□□□□□ -0.7
VRK3-218ENST00000600031 DNAJC30Q96LL9 226 aa10.69□□□□□ -0.7
VRK3-218ENST00000600031 OPRPNQ99935 248 aaPredicted RBP10.69□□□□□ -0.7
VRK3-218ENST00000600031 SPART-AS1P0CW21 52 aa10.69□□□□□ -0.7
VRK3-218ENST00000600031 MTURNQ8N3F0 131 aa10.69□□□□□ -0.7
VRK3-218ENST00000600031 MRAPQ8TCY5 172 aa10.69□□□□□ -0.7
VRK3-218ENST00000600031 DAD1P61803 113 aa10.68□□□□□ -0.7
VRK3-218ENST00000600031 KRTAP21-3Q3LHN1 58 aa10.68□□□□□ -0.7
VRK3-218ENST00000600031 PRO1854Q9UHT4 67 aa10.68□□□□□ -0.7
VRK3-218ENST00000600031 TENM3Q9P273 2699 aa10.68□□□□□ -0.7
VRK3-218ENST00000600031 TRBV10-1A0A0K0K1A3 114 aa10.67□□□□□ -0.7
VRK3-218ENST00000600031 TRBV6-4A0A1B0GX49 114 aa10.67□□□□□ -0.7
VRK3-218ENST00000600031 LOC100131303A0A0U1RQF7 123 aa10.67□□□□□ -0.7
VRK3-218ENST00000600031 SMCPP49901 116 aaPredicted RBP10.67□□□□□ -0.7
VRK3-218ENST00000600031 IGHV3-38A0A0C4DH36 116 aa10.66□□□□□ -0.7
VRK3-218ENST00000600031 A0A0J9YXV3 536 aa10.66□□□□□ -0.7
VRK3-218ENST00000600031 FOXI1Q12951 378 aa10.66□□□□□ -0.7
VRK3-218ENST00000600031 GAGE12JA6NER3 117 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms