RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 NFE4Q86UQ8 179 aa7.6□□□□□ -1.19
CUX1-217ENST00000558836 EDA2RQ9HAV5 297 aa7.6□□□□□ -1.19
CUX1-217ENST00000558836 PLAC8L1A1L4L8 177 aa7.59□□□□□ -1.19
CUX1-217ENST00000558836 APOMO95445 188 aa7.59□□□□□ -1.19
CUX1-217ENST00000558836 IL17DQ8TAD2 202 aa7.59□□□□□ -1.19
CUX1-217ENST00000558836 SS18L2Q9UHA2 77 aa7.59□□□□□ -1.19
CUX1-217ENST00000558836 IGLL5B9A064 214 aa7.59□□□□□ -1.19
CUX1-217ENST00000558836 K7EP34 96 aa7.59□□□□□ -1.19
CUX1-217ENST00000558836 PIK3CD-AS1Q5SR53 167 aa7.59□□□□□ -1.19
CUX1-217ENST00000558836 MTURNQ8N3F0 131 aa7.59□□□□□ -1.19
CUX1-217ENST00000558836 AMELXQ99217 191 aa7.59□□□□□ -1.19
CUX1-217ENST00000558836 GTF2H5Q6ZYL4 71 aa7.59□□□□□ -1.2
CUX1-217ENST00000558836 CSNK1G2-AS1Q8NCQ2 148 aa7.59□□□□□ -1.2
CUX1-217ENST00000558836 PTH2Q96A98 100 aa7.59□□□□□ -1.2
CUX1-217ENST00000558836 G3V4G9 280 aa7.58□□□□□ -1.2
CUX1-217ENST00000558836 TAL2Q16559 108 aa7.58□□□□□ -1.2
CUX1-217ENST00000558836 DGAT2L7PQ6IED9 249 aa7.58□□□□□ -1.2
CUX1-217ENST00000558836 LINC00482Q8N8I6 264 aa7.58□□□□□ -1.2
CUX1-217ENST00000558836 SPINK8P0C7L1 97 aa7.58□□□□□ -1.2
CUX1-217ENST00000558836 RRN3P1Q2M238 152 aa7.58□□□□□ -1.2
CUX1-217ENST00000558836 NTM-AS1Q6ZSK4 140 aa7.58□□□□□ -1.2
CUX1-217ENST00000558836 PYGO1Q9Y3Y4 419 aa7.58□□□□□ -1.2
CUX1-217ENST00000558836 STAB1Q9NY15 2570 aa7.57□□□□□ -1.2
CUX1-217ENST00000558836 K7EQD1 137 aa7.57□□□□□ -1.2
CUX1-217ENST00000558836 PKD1L1Q8TDX9 2849 aa7.57□□□□□ -1.2
CUX1-217ENST00000558836 IGHV3-30-3P0DP02 117 aa7.57□□□□□ -1.2
CUX1-217ENST00000558836 DEFB130BP0DP73 79 aa7.57□□□□□ -1.2
CUX1-217ENST00000558836 DEFB130AP0DP74 79 aa7.57□□□□□ -1.2
CUX1-217ENST00000558836 CKS1BP61024 79 aa7.57□□□□□ -1.2
CUX1-217ENST00000558836 SMAGPQ0VAQ4 97 aa7.57□□□□□ -1.2
CUX1-217ENST00000558836 NDUFA11Q86Y39 141 aa7.56□□□□□ -1.2
CUX1-217ENST00000558836 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP7.56□□□□□ -1.2
CUX1-217ENST00000558836 DNAJC30Q96LL9 226 aa7.56□□□□□ -1.2
CUX1-217ENST00000558836 GTSF1LQ9H1H1 148 aa7.56□□□□□ -1.2
CUX1-217ENST00000558836 MRPS36P82909 103 aaKnown RBP7.56□□□□□ -1.2
CUX1-217ENST00000558836 RPL36AP83881 106 aaKnown RBP7.56□□□□□ -1.2
CUX1-217ENST00000558836 C10orf126Q8N4M7 172 aa7.56□□□□□ -1.2
CUX1-217ENST00000558836 RPL36ALQ969Q0 106 aaKnown RBP7.56□□□□□ -1.2
CUX1-217ENST00000558836 TIMM21Q9BVV7 248 aa7.56□□□□□ -1.2
CUX1-217ENST00000558836 TRAV4A0A0B4J268 109 aa7.56□□□□□ -1.2
CUX1-217ENST00000558836 H3BMG7 143 aa7.56□□□□□ -1.2
CUX1-217ENST00000558836 LEPROTO15243 131 aa7.56□□□□□ -1.2
CUX1-217ENST00000558836 C16orf74Q96GX8 76 aa7.56□□□□□ -1.2
CUX1-217ENST00000558836 TRAV13-1A0A0B4J241 112 aa7.55□□□□□ -1.2
CUX1-217ENST00000558836 DEFB4AO15263 64 aa7.55□□□□□ -1.2
CUX1-217ENST00000558836 CRLF1O75462 422 aa7.55□□□□□ -1.2
CUX1-217ENST00000558836 NPC2P61916 151 aa7.55□□□□□ -1.2
CUX1-217ENST00000558836 COX6A2Q02221 97 aa7.55□□□□□ -1.2
CUX1-217ENST00000558836 CDKN2A-AS1Q9UH64 79 aa7.55□□□□□ -1.2
CUX1-217ENST00000558836 TRGV4A0A0C4DH28 118 aa7.55□□□□□ -1.2
CUX1-217ENST00000558836 IGHV3-30P01768 117 aa7.55□□□□□ -1.2
CUX1-217ENST00000558836 IGHV3-30-5P0DP03 117 aa7.55□□□□□ -1.2
CUX1-217ENST00000558836 CMC4P56277 68 aaPredicted RBP7.55□□□□□ -1.2
CUX1-217ENST00000558836 DAZ2Q13117 558 aaKnown RBP7.55□□□□□ -1.2
CUX1-217ENST00000558836 SPANXA1Q9NS26 97 aa7.55□□□□□ -1.2
CUX1-217ENST00000558836 SMIM20Q8N5G0 67 aa7.54□□□□□ -1.2
CUX1-217ENST00000558836 C1QTNF4Q9BXJ3 329 aa7.54□□□□□ -1.2
CUX1-217ENST00000558836 IGKV3OR2-268A0A0C4DH90 116 aa7.54□□□□□ -1.2
CUX1-217ENST00000558836 RPL24P83731 157 aaKnown RBP7.54□□□□□ -1.2
CUX1-217ENST00000558836 UBE2D3P61077 147 aa7.53□□□□□ -1.2
CUX1-217ENST00000558836 UBE2D2P62837 147 aa7.53□□□□□ -1.2
CUX1-217ENST00000558836 LOC107984156A0A0G2JMH3 177 aa7.53□□□□□ -1.2
CUX1-217ENST00000558836 H7C2G1 150 aa7.53□□□□□ -1.2
CUX1-217ENST00000558836 PRSS2P07478 247 aa7.53□□□□□ -1.2
CUX1-217ENST00000558836 SCGB1A1P11684 91 aa7.53□□□□□ -1.2
CUX1-217ENST00000558836 UBE2D1P51668 147 aa7.53□□□□□ -1.2
CUX1-217ENST00000558836 ARL17AQ8IVW1 177 aa7.53□□□□□ -1.2
CUX1-217ENST00000558836 ANK2Q01484 3957 aa7.53□□□□□ -1.2
CUX1-217ENST00000558836 MAST4O15021 2626 aa7.53□□□□□ -1.2
CUX1-217ENST00000558836 A0A0J9YXY3 114 aa7.53□□□□□ -1.2
CUX1-217ENST00000558836 CFC1BP0CG36 223 aa7.53□□□□□ -1.2
CUX1-217ENST00000558836 CFC1P0CG37 223 aa7.53□□□□□ -1.2
CUX1-217ENST00000558836 MUSTN1Q8IVN3 82 aa7.53□□□□□ -1.2
CUX1-217ENST00000558836 OR5A1Q8NGJ0 315 aa7.53□□□□□ -1.2
CUX1-217ENST00000558836 TINCRA0A1B0GVN0 87 aa7.52□□□□□ -1.21
CUX1-217ENST00000558836 A0A1B0GWB2 263 aa7.52□□□□□ -1.21
CUX1-217ENST00000558836 TSPAN13O95857 204 aa7.52□□□□□ -1.21
CUX1-217ENST00000558836 DAND5Q8N907 189 aa7.52□□□□□ -1.21
CUX1-217ENST00000558836 ZNF625Q96I27 306 aaPredicted RBP7.52□□□□□ -1.21
CUX1-217ENST00000558836 FBN1P35555 2871 aaKnown RBP7.52□□□□□ -1.21
CUX1-217ENST00000558836 IGHV1-58A0A0C4DH39 117 aa7.52□□□□□ -1.21
CUX1-217ENST00000558836 A0A0U1RRA0 63 aa7.52□□□□□ -1.21
CUX1-217ENST00000558836 ADAMTSL4-AS1Q5T5F5 129 aa7.52□□□□□ -1.21
CUX1-217ENST00000558836 NDUFA12Q9UI09 145 aa7.52□□□□□ -1.21
CUX1-217ENST00000558836 A0A096LPF7 62 aa7.51□□□□□ -1.21
CUX1-217ENST00000558836 TRBV10-1A0A0K0K1A3 114 aa7.51□□□□□ -1.21
CUX1-217ENST00000558836 DAZ4Q86SG3 579 aaKnown RBP7.51□□□□□ -1.21
CUX1-217ENST00000558836 VSIG2Q96IQ7 327 aa7.51□□□□□ -1.21
CUX1-217ENST00000558836 DAZ3Q9NR90 486 aaKnown RBP7.51□□□□□ -1.21
CUX1-217ENST00000558836 EIF4EBP3O60516 100 aaPredicted RBP7.51□□□□□ -1.21
CUX1-217ENST00000558836 WFDC2Q14508 124 aa7.51□□□□□ -1.21
CUX1-217ENST00000558836 LINC00242Q5T6M2 205 aa7.51□□□□□ -1.21
CUX1-217ENST00000558836 SIGMAR1Q99720 223 aa7.51□□□□□ -1.21
CUX1-217ENST00000558836 GAGE6Q13070 117 aa7.5□□□□□ -1.21
CUX1-217ENST00000558836 FHL2Q14192 279 aa7.5□□□□□ -1.21
CUX1-217ENST00000558836 DEFB135Q30KP9 77 aa7.5□□□□□ -1.21
CUX1-217ENST00000558836 OVOL2Q9BRP0 275 aa7.5□□□□□ -1.21
CUX1-217ENST00000558836 UBE2L6O14933 153 aa7.5□□□□□ -1.21
CUX1-217ENST00000558836 SPANXB1Q9NS25 103 aaPredicted RBP7.5□□□□□ -1.21
CUX1-217ENST00000558836 TMEM101Q96IK0 257 aa7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 148.8 ms