RNA–Protein interactions for RNA: ENST00000557439.5

XRCC3-218, Transcript of X-ray repair cross complementing 3, humanhuman

TSL 5

Gene XRCC3, Length 2,599 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC3-218ENST00000557439 C9JAW5 83 aa12.75□□□□□ -0.37
XRCC3-218ENST00000557439 COX6A2Q02221 97 aa12.75□□□□□ -0.37
XRCC3-218ENST00000557439 ANKRD29Q8N6D5 301 aa12.75□□□□□ -0.37
XRCC3-218ENST00000557439 VSIG2Q96IQ7 327 aa12.75□□□□□ -0.37
XRCC3-218ENST00000557439 STHQ8IWL8 128 aa12.75□□□□□ -0.37
XRCC3-218ENST00000557439 RS1O15537 224 aa12.74□□□□□ -0.37
XRCC3-218ENST00000557439 LYRM7Q5U5X0 104 aa12.74□□□□□ -0.37
XRCC3-218ENST00000557439 Q6ZTI0 123 aa12.74□□□□□ -0.37
XRCC3-218ENST00000557439 CDIP1Q9H305 208 aa12.74□□□□□ -0.37
XRCC3-218ENST00000557439 GEMIN7Q9H840 131 aaKnown RBP12.74□□□□□ -0.37
XRCC3-218ENST00000557439 TENM4Q6N022 2769 aa12.74□□□□□ -0.37
XRCC3-218ENST00000557439 A0A0U1RRA0 63 aa12.74□□□□□ -0.37
XRCC3-218ENST00000557439 TINCRA0A1B0GVN0 87 aa12.73□□□□□ -0.37
XRCC3-218ENST00000557439 BEAN1Q3B7T3 259 aa12.73□□□□□ -0.37
XRCC3-218ENST00000557439 TEN1Q86WV5 123 aa12.73□□□□□ -0.37
XRCC3-218ENST00000557439 ZNF625Q96I27 306 aaPredicted RBP12.73□□□□□ -0.37
XRCC3-218ENST00000557439 SPANXA1Q9NS26 97 aa12.73□□□□□ -0.37
XRCC3-218ENST00000557439 TRBV20-1A0A075B6N2 111 aa12.73□□□□□ -0.37
XRCC3-218ENST00000557439 A0A0B4J2C4 111 aa12.73□□□□□ -0.37
XRCC3-218ENST00000557439 DGAT2L7PQ6IED9 249 aa12.72□□□□□ -0.37
XRCC3-218ENST00000557439 CCL24O00175 119 aa12.71□□□□□ -0.37
XRCC3-218ENST00000557439 TRIAP1O43715 76 aa12.71□□□□□ -0.37
XRCC3-218ENST00000557439 SLC25A20O43772 301 aa12.71□□□□□ -0.37
XRCC3-218ENST00000557439 PLA2G2AP14555 144 aa12.71□□□□□ -0.37
XRCC3-218ENST00000557439 ATP6V0E2Q8NHE4 81 aa12.71□□□□□ -0.37
XRCC3-218ENST00000557439 CITED2Q99967 270 aaPredicted RBP12.71□□□□□ -0.37
XRCC3-218ENST00000557439 PPDPFLQ8WWR9 84 aa12.7□□□□□ -0.38
XRCC3-218ENST00000557439 MT-ATP8P03928 68 aa12.69□□□□□ -0.38
XRCC3-218ENST00000557439 SBSPONQ8IVN8 264 aa12.69□□□□□ -0.38
XRCC3-218ENST00000557439 TMEM101Q96IK0 257 aa12.69□□□□□ -0.38
XRCC3-218ENST00000557439 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.69□□□□□ -0.38
XRCC3-218ENST00000557439 TRAV13-1A0A0B4J241 112 aa12.69□□□□□ -0.38
XRCC3-218ENST00000557439 GAGE12JA6NER3 117 aa12.69□□□□□ -0.38
XRCC3-218ENST00000557439 GAGE4Q13068 117 aa12.69□□□□□ -0.38
XRCC3-218ENST00000557439 GAGE5Q13069 117 aa12.69□□□□□ -0.38
XRCC3-218ENST00000557439 NTM-AS1Q6ZSK4 140 aa12.69□□□□□ -0.38
XRCC3-218ENST00000557439 CRYBA4P53673 196 aa12.68□□□□□ -0.38
XRCC3-218ENST00000557439 PIK3CD-AS1Q5SR53 167 aa12.68□□□□□ -0.38
XRCC3-218ENST00000557439 NOP10Q9NPE3 64 aaKnown RBP12.68□□□□□ -0.38
XRCC3-218ENST00000557439 XGP55808 180 aa12.68□□□□□ -0.38
XRCC3-218ENST00000557439 DNAJC30Q96LL9 226 aa12.68□□□□□ -0.38
XRCC3-218ENST00000557439 ITPR2Q14571 2701 aa12.67□□□□□ -0.38
XRCC3-218ENST00000557439 MIAQ16674 131 aa12.67□□□□□ -0.38
XRCC3-218ENST00000557439 LRRC75A-AS1Q8N1F1 130 aa12.67□□□□□ -0.38
XRCC3-218ENST00000557439 RPL35AP18077 110 aaKnown RBP12.67□□□□□ -0.38
XRCC3-218ENST00000557439 ZFAND6Q6FIF0 208 aa12.67□□□□□ -0.38
XRCC3-218ENST00000557439 FN1P02751 2386 aaKnown RBP12.66□□□□□ -0.38
XRCC3-218ENST00000557439 LOC100131303A0A0U1RQF7 123 aa12.66□□□□□ -0.38
XRCC3-218ENST00000557439 LINC00242Q5T6M2 205 aa12.66□□□□□ -0.38
XRCC3-218ENST00000557439 CLEC2BQ92478 149 aa12.66□□□□□ -0.38
XRCC3-218ENST00000557439 SPANXDQ9BXN6 97 aa12.65□□□□□ -0.38
XRCC3-218ENST00000557439 SPANXCQ9NY87 97 aa12.65□□□□□ -0.38
XRCC3-218ENST00000557439 LINC01620Q4KN68 170 aa12.65□□□□□ -0.39
XRCC3-218ENST00000557439 IL17DQ8TAD2 202 aa12.65□□□□□ -0.39
XRCC3-218ENST00000557439 Q9H8V8 135 aa12.65□□□□□ -0.39
XRCC3-218ENST00000557439 GIG44P09565 113 aaPredicted RBP12.64□□□□□ -0.39
XRCC3-218ENST00000557439 NTN5Q8WTR8 489 aaPredicted RBP12.64□□□□□ -0.39
XRCC3-218ENST00000557439 ICOSQ9Y6W8 199 aa12.64□□□□□ -0.39
XRCC3-218ENST00000557439 ANK3Q12955 4377 aaKnown RBP12.64□□□□□ -0.39
XRCC3-218ENST00000557439 K7EQD1 137 aa12.64□□□□□ -0.39
XRCC3-218ENST00000557439 PDZD2O15018 2839 aa12.64□□□□□ -0.39
XRCC3-218ENST00000557439 GAGE7O76087 117 aa12.63□□□□□ -0.39
XRCC3-218ENST00000557439 GAGE12FP0CL80 117 aa12.63□□□□□ -0.39
XRCC3-218ENST00000557439 GAGE12GP0CL81 117 aa12.63□□□□□ -0.39
XRCC3-218ENST00000557439 GAGE12IP0CL82 117 aa12.63□□□□□ -0.39
XRCC3-218ENST00000557439 RPL36AP83881 106 aaKnown RBP12.62□□□□□ -0.39
XRCC3-218ENST00000557439 ATXN8Q156A1 80 aa12.62□□□□□ -0.39
XRCC3-218ENST00000557439 RPL36ALQ969Q0 106 aaKnown RBP12.62□□□□□ -0.39
XRCC3-218ENST00000557439 TEX49A0A1B0GTD5 131 aa12.62□□□□□ -0.39
XRCC3-218ENST00000557439 RPL13AP40429 203 aaKnown RBP12.62□□□□□ -0.39
XRCC3-218ENST00000557439 TRBV30A0A0K0K1B3 111 aa12.61□□□□□ -0.39
XRCC3-218ENST00000557439 LINC01006Q8NI28 216 aa12.61□□□□□ -0.39
XRCC3-218ENST00000557439 IGLV5-45A0A087WSX0 123 aa12.61□□□□□ -0.39
XRCC3-218ENST00000557439 TIRAPP58753 221 aa12.61□□□□□ -0.39
XRCC3-218ENST00000557439 IGKV3OR2-268A0A0C4DH90 116 aa12.6□□□□□ -0.39
XRCC3-218ENST00000557439 CLUHP3Q96NS8 147 aa12.6□□□□□ -0.39
XRCC3-218ENST00000557439 NBEAL2Q6ZNJ1 2754 aa12.6□□□□□ -0.39
XRCC3-218ENST00000557439 SMIM1B2RUZ4 78 aa12.6□□□□□ -0.39
XRCC3-218ENST00000557439 NDUFA1O15239 70 aa12.6□□□□□ -0.39
XRCC3-218ENST00000557439 SCGB1A1P11684 91 aa12.6□□□□□ -0.39
XRCC3-218ENST00000557439 TMEM86BQ8N661 226 aa12.6□□□□□ -0.39
XRCC3-218ENST00000557439 TRAV25A0A0B4J276 109 aa12.59□□□□□ -0.39
XRCC3-218ENST00000557439 PLAC8L1A1L4L8 177 aa12.59□□□□□ -0.39
XRCC3-218ENST00000557439 SOSTDC1Q6X4U4 206 aa12.59□□□□□ -0.39
XRCC3-218ENST00000557439 TRGV2A0A075B6R0 118 aa12.58□□□□□ -0.4
XRCC3-218ENST00000557439 YAE1D1Q9NRH1 226 aa12.58□□□□□ -0.4
XRCC3-218ENST00000557439 TRAV4A0A0B4J268 109 aa12.57□□□□□ -0.4
XRCC3-218ENST00000557439 HERVK_113P63121 156 aa12.57□□□□□ -0.4
XRCC3-218ENST00000557439 GCN1Q92616 2671 aaKnown RBP12.57□□□□□ -0.4
XRCC3-218ENST00000557439 IGLV5-39A0A0G2JS06 123 aa12.57□□□□□ -0.4
XRCC3-218ENST00000557439 KRTAP1-1Q07627 177 aa12.57□□□□□ -0.4
XRCC3-218ENST00000557439 LINC00308Q8TCZ7 52 aa12.57□□□□□ -0.4
XRCC3-218ENST00000557439 CDC42SE2Q9NRR3 84 aa12.57□□□□□ -0.4
XRCC3-218ENST00000557439 H7C423 109 aa12.56□□□□□ -0.4
XRCC3-218ENST00000557439 PRIMA1Q86XR5 153 aa12.55□□□□□ -0.4
XRCC3-218ENST00000557439 TRBV10-2A0A0K0K1G8 114 aa12.55□□□□□ -0.4
XRCC3-218ENST00000557439 CKS1BP61024 79 aa12.55□□□□□ -0.4
XRCC3-218ENST00000557439 DAZ2Q13117 558 aaKnown RBP12.55□□□□□ -0.4
XRCC3-218ENST00000557439 MEIG1Q5JSS6 88 aa12.55□□□□□ -0.4
XRCC3-218ENST00000557439 C2orf82Q6UX34 121 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms