RNA–Protein interactions for RNA: ENST00000549162.5

SCAF11-212, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 1 (best) BASIC

Gene SCAF11, Length 3,934 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-212ENST00000549162 M0R036 132 aa3.27□□□□□ -1.89
SCAF11-212ENST00000549162 SPRR1BP22528 89 aa3.27□□□□□ -1.89
SCAF11-212ENST00000549162 Q5XG85 94 aa3.27□□□□□ -1.89
SCAF11-212ENST00000549162 MRPL35Q9NZE8 188 aaKnown RBP3.27□□□□□ -1.89
SCAF11-212ENST00000549162 TPRP12270 2363 aaKnown RBP3.27□□□□□ -1.89
SCAF11-212ENST00000549162 GRIFINA4D1Z8 144 aa3.27□□□□□ -1.89
SCAF11-212ENST00000549162 HERVK_113P63121 156 aa3.27□□□□□ -1.89
SCAF11-212ENST00000549162 COPS9Q8WXC6 57 aa3.27□□□□□ -1.89
SCAF11-212ENST00000549162 CHD6Q8TD26 2715 aa3.27□□□□□ -1.89
SCAF11-212ENST00000549162 ASH1LQ9NR48 2969 aaKnown RBP3.27□□□□□ -1.89
SCAF11-212ENST00000549162 TRAV9-2A0A087WT02 112 aa3.26□□□□□ -1.89
SCAF11-212ENST00000549162 ATP5G1P05496 136 aa3.26□□□□□ -1.89
SCAF11-212ENST00000549162 GAGE5Q13069 117 aa3.26□□□□□ -1.89
SCAF11-212ENST00000549162 GAGE6Q13070 117 aa3.26□□□□□ -1.89
SCAF11-212ENST00000549162 MIAQ16674 131 aa3.26□□□□□ -1.89
SCAF11-212ENST00000549162 CEMP1Q6PRD7 247 aaPredicted RBP3.26□□□□□ -1.89
SCAF11-212ENST00000549162 SMIM15Q7Z3B0 74 aa3.26□□□□□ -1.89
SCAF11-212ENST00000549162 PRADC1Q9BSG0 188 aa3.26□□□□□ -1.89
SCAF11-212ENST00000549162 ANKRD17O75179 2603 aaKnown RBP3.26□□□□□ -1.89
SCAF11-212ENST00000549162 IGLV8-61A0A075B6I0 122 aa3.26□□□□□ -1.89
SCAF11-212ENST00000549162 CARD19Q96LW7 228 aa3.26□□□□□ -1.89
SCAF11-212ENST00000549162 CUBNO60494 3623 aa3.26□□□□□ -1.89
SCAF11-212ENST00000549162 IGHV1-58A0A0C4DH39 117 aa3.26□□□□□ -1.89
SCAF11-212ENST00000549162 ICOSQ9Y6W8 199 aa3.26□□□□□ -1.89
SCAF11-212ENST00000549162 APOC3P02656 99 aa3.25□□□□□ -1.89
SCAF11-212ENST00000549162 Q6Q795 121 aa3.25□□□□□ -1.89
SCAF11-212ENST00000549162 PLEKHB2Q96CS7 222 aa3.25□□□□□ -1.89
SCAF11-212ENST00000549162 C2orf88Q9BSF0 95 aa3.25□□□□□ -1.89
SCAF11-212ENST00000549162 AZU1P20160 251 aa3.25□□□□□ -1.89
SCAF11-212ENST00000549162 LYPD5Q6UWN5 251 aa3.25□□□□□ -1.89
SCAF11-212ENST00000549162 SMR3AQ99954 134 aa3.25□□□□□ -1.89
SCAF11-212ENST00000549162 ASB16-AS1Q495Z4 193 aa3.25□□□□□ -1.89
SCAF11-212ENST00000549162 TTC32Q5I0X7 151 aa3.25□□□□□ -1.89
SCAF11-212ENST00000549162 KRTAP13-1Q8IUC0 172 aa3.25□□□□□ -1.89
SCAF11-212ENST00000549162 URB1O60287 2271 aaKnown RBP3.25□□□□□ -1.89
SCAF11-212ENST00000549162 PLCE1Q9P212 2302 aa3.25□□□□□ -1.89
SCAF11-212ENST00000549162 LRCOL1A6NCL2 159 aa3.25□□□□□ -1.89
SCAF11-212ENST00000549162 KRTAP4-16G5E9R7 235 aaPredicted RBP3.25□□□□□ -1.89
SCAF11-212ENST00000549162 LINC00242Q5T6M2 205 aa3.25□□□□□ -1.89
SCAF11-212ENST00000549162 CYSLTR1Q9Y271 337 aa3.25□□□□□ -1.89
SCAF11-212ENST00000549162 NCOR2Q9Y618 2525 aa3.24□□□□□ -1.89
SCAF11-212ENST00000549162 TRAV8-1A0A0A6YYK1 113 aa3.24□□□□□ -1.89
SCAF11-212ENST00000549162 D6R8Y8 96 aa3.24□□□□□ -1.89
SCAF11-212ENST00000549162 RRN3P1Q2M238 152 aa3.24□□□□□ -1.89
SCAF11-212ENST00000549162 C2orf91Q6ZV80 131 aa3.24□□□□□ -1.89
SCAF11-212ENST00000549162 MPLKIPQ8TAP9 179 aa3.24□□□□□ -1.89
SCAF11-212ENST00000549162 IGLV10-54A0A075B6I4 117 aa3.24□□□□□ -1.89
SCAF11-212ENST00000549162 RPL36AP83881 106 aaKnown RBP3.24□□□□□ -1.89
SCAF11-212ENST00000549162 SLC25A29Q8N8R3 303 aa3.24□□□□□ -1.89
SCAF11-212ENST00000549162 RPL36ALQ969Q0 106 aaKnown RBP3.24□□□□□ -1.89
SCAF11-212ENST00000549162 APC2O95996 2303 aa3.24□□□□□ -1.89
SCAF11-212ENST00000549162 TEP1Q99973 2627 aaKnown RBP3.24□□□□□ -1.89
SCAF11-212ENST00000549162 DNAH5Q8TE73 4624 aa3.24□□□□□ -1.89
SCAF11-212ENST00000549162 SMKR1H3BMG3 65 aa3.24□□□□□ -1.89
SCAF11-212ENST00000549162 SERF1AO75920 110 aa3.24□□□□□ -1.89
SCAF11-212ENST00000549162 SOSTDC1Q6X4U4 206 aa3.24□□□□□ -1.89
SCAF11-212ENST00000549162 BOD1L1Q8NFC6 3051 aa3.23□□□□□ -1.89
SCAF11-212ENST00000549162 RPL37AP8A6NKH3 93 aa3.23□□□□□ -1.89
SCAF11-212ENST00000549162 F6UB75 175 aa3.23□□□□□ -1.89
SCAF11-212ENST00000549162 EIF3GO75821 320 aaKnown RBP eCLIP3.23□□□□□ -1.89
SCAF11-212ENST00000549162 MIEN1Q9BRT3 115 aa3.23□□□□□ -1.89
SCAF11-212ENST00000549162 KRTAP3-1Q9BYR8 98 aa3.23□□□□□ -1.89
SCAF11-212ENST00000549162 STARD9Q9P2P6 4700 aa3.23□□□□□ -1.89
SCAF11-212ENST00000549162 GNRH2O43555 120 aa3.23□□□□□ -1.89
SCAF11-212ENST00000549162 C14orf177Q52M58 125 aa3.23□□□□□ -1.89
SCAF11-212ENST00000549162 PRAC1Q96KF2 57 aa3.23□□□□□ -1.89
SCAF11-212ENST00000549162 DNHD1Q96M86 4753 aa3.23□□□□□ -1.89
SCAF11-212ENST00000549162 LINC00483Q53H64 154 aa3.23□□□□□ -1.89
SCAF11-212ENST00000549162 PRSS3P2Q8NHM4 247 aa3.23□□□□□ -1.89
SCAF11-212ENST00000549162 PHLDA3Q9Y5J5 127 aa3.23□□□□□ -1.89
SCAF11-212ENST00000549162 NAV3Q8IVL0 2385 aa3.22□□□□□ -1.89
SCAF11-212ENST00000549162 RYR2Q92736 4967 aa3.22□□□□□ -1.89
SCAF11-212ENST00000549162 EP300Q09472 2414 aaPredicted RBP3.22□□□□□ -1.89
SCAF11-212ENST00000549162 HNRNPA3P51991 378 aaKnown RBP3.22□□□□□ -1.89
SCAF11-212ENST00000549162 CCL18P55774 89 aa3.22□□□□□ -1.89
SCAF11-212ENST00000549162 TWIST1Q15672 202 aa3.22□□□□□ -1.89
SCAF11-212ENST00000549162 PYY3Q5JQD4 70 aa3.22□□□□□ -1.89
SCAF11-212ENST00000549162 KNCNA6PVL3 124 aa3.22□□□□□ -1.89
SCAF11-212ENST00000549162 NUPR1O60356 82 aa3.22□□□□□ -1.89
SCAF11-212ENST00000549162 ZNF688P0C7X2 276 aa3.22□□□□□ -1.89
SCAF11-212ENST00000549162 C3orf79P0CE67 100 aa3.22□□□□□ -1.89
SCAF11-212ENST00000549162 IGLL1P15814 213 aa3.22□□□□□ -1.89
SCAF11-212ENST00000549162 RMI2Q96E14 147 aa3.22□□□□□ -1.89
SCAF11-212ENST00000549162 SMIM1B2RUZ4 78 aa3.22□□□□□ -1.89
SCAF11-212ENST00000549162 INAFM2P0DMQ5 153 aa3.22□□□□□ -1.89
SCAF11-212ENST00000549162 Q6ZTI0 123 aa3.22□□□□□ -1.89
SCAF11-212ENST00000549162 Q8TAT8 98 aa3.22□□□□□ -1.89
SCAF11-212ENST00000549162 ITPR3Q14573 2671 aa3.21□□□□□ -1.89
SCAF11-212ENST00000549162 SETXQ7Z333 2677 aaKnown RBP3.21□□□□□ -1.9
SCAF11-212ENST00000549162 DPM2O94777 84 aa3.21□□□□□ -1.9
SCAF11-212ENST00000549162 C14orf178Q8N769 122 aaPredicted RBP3.21□□□□□ -1.9
SCAF11-212ENST00000549162 NAV2Q8IVL1 2488 aa3.21□□□□□ -1.9
SCAF11-212ENST00000549162 FLNBO75369 2602 aaKnown RBP3.21□□□□□ -1.9
SCAF11-212ENST00000549162 MPV17L2Q567V2 206 aa3.21□□□□□ -1.9
SCAF11-212ENST00000549162 ATOH7Q8N100 152 aa3.21□□□□□ -1.9
SCAF11-212ENST00000549162 KIR2DL4Q99706 377 aa3.21□□□□□ -1.9
SCAF11-212ENST00000549162 TMEM243Q9BU79 118 aa3.21□□□□□ -1.9
SCAF11-212ENST00000549162 TRBV25-1A0A075B6N4 114 aa3.21□□□□□ -1.9
SCAF11-212ENST00000549162 IGHV3-38A0A0C4DH36 116 aa3.21□□□□□ -1.9
SCAF11-212ENST00000549162 SMIM17P0DL12 118 aa3.21□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms