RNA–Protein interactions for RNA: ENST00000547672.5

PTCH1-215, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 881 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-215ENST00000547672 TMEM170BQ5T4T1 132 aa9.46□□□□□ -0.9
PTCH1-215ENST00000547672 SPATA25Q9BR10 227 aa9.46□□□□□ -0.9
PTCH1-215ENST00000547672 IGLV4-69A0A075B6H9 119 aa9.45□□□□□ -0.9
PTCH1-215ENST00000547672 F5H768 121 aa9.45□□□□□ -0.9
PTCH1-215ENST00000547672 H3BRM9 83 aa9.45□□□□□ -0.9
PTCH1-215ENST00000547672 DEFB4AO15263 64 aa9.45□□□□□ -0.9
PTCH1-215ENST00000547672 NTM-AS1Q6ZSK4 140 aa9.45□□□□□ -0.9
PTCH1-215ENST00000547672 SBSPONQ8IVN8 264 aa9.45□□□□□ -0.9
PTCH1-215ENST00000547672 CHAC1Q9BUX1 264 aa9.45□□□□□ -0.9
PTCH1-215ENST00000547672 GEMIN7Q9H840 131 aaKnown RBP9.45□□□□□ -0.9
PTCH1-215ENST00000547672 HIGD1BQ9P298 99 aa9.45□□□□□ -0.9
PTCH1-215ENST00000547672 TIRAPP58753 221 aa9.44□□□□□ -0.9
PTCH1-215ENST00000547672 PLEKHB2Q96CS7 222 aa9.44□□□□□ -0.9
PTCH1-215ENST00000547672 CHCHD5Q9BSY4 110 aa9.44□□□□□ -0.9
PTCH1-215ENST00000547672 ICOSQ9Y6W8 199 aa9.44□□□□□ -0.9
PTCH1-215ENST00000547672 LOC100131303A0A0U1RQF7 123 aa9.43□□□□□ -0.9
PTCH1-215ENST00000547672 CCL25O15444 150 aa9.43□□□□□ -0.9
PTCH1-215ENST00000547672 HERVK_113P63121 156 aa9.43□□□□□ -0.9
PTCH1-215ENST00000547672 OPRPNQ99935 248 aaPredicted RBP9.43□□□□□ -0.9
PTCH1-215ENST00000547672 CDC42SE2Q9NRR3 84 aa9.43□□□□□ -0.9
PTCH1-215ENST00000547672 STAB1Q9NY15 2570 aa9.43□□□□□ -0.9
PTCH1-215ENST00000547672 TRAV8-6A0A0B4J262 113 aa9.42□□□□□ -0.9
PTCH1-215ENST00000547672 DEFB121Q5J5C9 76 aa9.42□□□□□ -0.9
PTCH1-215ENST00000547672 COL5A1-AS1Q5SY13 56 aa9.42□□□□□ -0.9
PTCH1-215ENST00000547672 FAM19A3Q7Z5A8 133 aa9.42□□□□□ -0.9
PTCH1-215ENST00000547672 COL6A5A8TX70 2615 aa9.41□□□□□ -0.9
PTCH1-215ENST00000547672 A0A0J9YXV3 536 aa9.41□□□□□ -0.9
PTCH1-215ENST00000547672 MYMXA0A1B0GTQ4 84 aa9.41□□□□□ -0.9
PTCH1-215ENST00000547672 A0A1B0GUV1 79 aa9.41□□□□□ -0.9
PTCH1-215ENST00000547672 LEPROTO15243 131 aa9.41□□□□□ -0.9
PTCH1-215ENST00000547672 LGALS3P17931 250 aaKnown RBP9.41□□□□□ -0.9
PTCH1-215ENST00000547672 UBE2D1P51668 147 aa9.41□□□□□ -0.9
PTCH1-215ENST00000547672 TAL2Q16559 108 aa9.41□□□□□ -0.9
PTCH1-215ENST00000547672 Q6ZUT4 128 aa9.41□□□□□ -0.9
PTCH1-215ENST00000547672 MDFIQ99750 246 aa9.41□□□□□ -0.9
PTCH1-215ENST00000547672 CELA1Q9UNI1 258 aa9.41□□□□□ -0.9
PTCH1-215ENST00000547672 TMEM223A0PJW6 202 aa9.4□□□□□ -0.9
PTCH1-215ENST00000547672 HTN3P15516 51 aa9.4□□□□□ -0.9
PTCH1-215ENST00000547672 HSD52Q0P140 79 aa9.4□□□□□ -0.9
PTCH1-215ENST00000547672 C12orf74Q32Q52 190 aa9.4□□□□□ -0.9
PTCH1-215ENST00000547672 CEMP1Q6PRD7 247 aaPredicted RBP9.4□□□□□ -0.9
PTCH1-215ENST00000547672 PCP2Q8IVA1 136 aa9.4□□□□□ -0.9
PTCH1-215ENST00000547672 VSIG2Q96IQ7 327 aa9.4□□□□□ -0.9
PTCH1-215ENST00000547672 SNHG12Q9BXW3 62 aa9.4□□□□□ -0.9
PTCH1-215ENST00000547672 IGKV2D-26A0A0A0MRZ7 120 aa9.39□□□□□ -0.91
PTCH1-215ENST00000547672 TMEM262E9PQX1 116 aa9.39□□□□□ -0.91
PTCH1-215ENST00000547672 ZNF22P17026 224 aaPredicted RBP9.39□□□□□ -0.91
PTCH1-215ENST00000547672 C11orf45Q8TAV5 145 aa9.39□□□□□ -0.91
PTCH1-215ENST00000547672 A0A0J9YY99 117 aa9.38□□□□□ -0.91
PTCH1-215ENST00000547672 J3QQQ9 107 aa9.38□□□□□ -0.91
PTCH1-215ENST00000547672 GAGE6Q13070 117 aa9.38□□□□□ -0.91
PTCH1-215ENST00000547672 LINC00469Q8N7U9 141 aa9.38□□□□□ -0.91
PTCH1-215ENST00000547672 FAM104AQ969W3 186 aa9.38□□□□□ -0.91
PTCH1-215ENST00000547672 TM2D3Q9BRN9 247 aa9.38□□□□□ -0.91
PTCH1-215ENST00000547672 IGLV5-45A0A087WSX0 123 aa9.37□□□□□ -0.91
PTCH1-215ENST00000547672 A6NDN8 102 aa9.37□□□□□ -0.91
PTCH1-215ENST00000547672 ZNF815PA8K554 130 aa9.37□□□□□ -0.91
PTCH1-215ENST00000547672 K7EIL1 84 aa9.37□□□□□ -0.91
PTCH1-215ENST00000547672 BATFQ16520 125 aa9.37□□□□□ -0.91
PTCH1-215ENST00000547672 LELP1Q5T871 98 aa9.37□□□□□ -0.91
PTCH1-215ENST00000547672 SCGB1D4Q6XE38 83 aa9.37□□□□□ -0.91
PTCH1-215ENST00000547672 IGHV1-58A0A0C4DH39 117 aa9.36□□□□□ -0.91
PTCH1-215ENST00000547672 HINT1P49773 126 aaPredicted RBP9.36□□□□□ -0.91
PTCH1-215ENST00000547672 TCTAP57738 103 aa9.36□□□□□ -0.91
PTCH1-215ENST00000547672 MPV17L2Q567V2 206 aa9.36□□□□□ -0.91
PTCH1-215ENST00000547672 LCE2DQ5TA82 110 aaPredicted RBP9.36□□□□□ -0.91
PTCH1-215ENST00000547672 C2orf91Q6ZV80 131 aa9.36□□□□□ -0.91
PTCH1-215ENST00000547672 RETNQ9HD89 108 aa9.36□□□□□ -0.91
PTCH1-215ENST00000547672 A0A0J9YWU9 116 aa9.35□□□□□ -0.91
PTCH1-215ENST00000547672 SS18Q15532 418 aa9.35□□□□□ -0.91
PTCH1-215ENST00000547672 NBEAL2Q6ZNJ1 2754 aa9.34□□□□□ -0.91
PTCH1-215ENST00000547672 TRAV13-1A0A0B4J241 112 aa9.34□□□□□ -0.91
PTCH1-215ENST00000547672 RNASE13Q5GAN3 156 aaKnown RBP9.34□□□□□ -0.91
PTCH1-215ENST00000547672 BVES-AS1Q5T3Y7 98 aa9.34□□□□□ -0.91
PTCH1-215ENST00000547672 LINC00242Q5T6M2 205 aa9.34□□□□□ -0.91
PTCH1-215ENST00000547672 MAPKAPK5-AS1Q8N8E1 139 aa9.34□□□□□ -0.91
PTCH1-215ENST00000547672 ORAOV1Q8WV07 137 aa9.34□□□□□ -0.91
PTCH1-215ENST00000547672 DEFB131BA0A096LNP1 70 aa9.33□□□□□ -0.92
PTCH1-215ENST00000547672 A0A096LPF7 62 aa9.33□□□□□ -0.92
PTCH1-215ENST00000547672 TRAV10A0A0B4J240 114 aa9.33□□□□□ -0.92
PTCH1-215ENST00000547672 EREGO14944 169 aa9.33□□□□□ -0.92
PTCH1-215ENST00000547672 HIST1H4GQ99525 98 aa9.33□□□□□ -0.92
PTCH1-215ENST00000547672 TMEM238LA0A1B0GVL6 79 aa9.32□□□□□ -0.92
PTCH1-215ENST00000547672 A6NJY4 79 aa9.32□□□□□ -0.92
PTCH1-215ENST00000547672 IGHV3-30-3P0DP02 117 aa9.32□□□□□ -0.92
PTCH1-215ENST00000547672 RBX1P62877 108 aa9.32□□□□□ -0.92
PTCH1-215ENST00000547672 SRSF9Q13242 221 aaKnown RBP eCLIP9.32□□□□□ -0.92
PTCH1-215ENST00000547672 SFTA2Q6UW10 78 aa9.32□□□□□ -0.92
PTCH1-215ENST00000547672 LINC01561Q8N1V8 128 aa9.32□□□□□ -0.92
PTCH1-215ENST00000547672 C15orf53Q8NAA6 179 aa9.32□□□□□ -0.92
PTCH1-215ENST00000547672 PTTG1IPP53801 180 aa9.31□□□□□ -0.92
PTCH1-215ENST00000547672 CIRBPQ14011 172 aaKnown RBP9.31□□□□□ -0.92
PTCH1-215ENST00000547672 Q6ZTC4 211 aa9.31□□□□□ -0.92
PTCH1-215ENST00000547672 TM2D2Q9BX73 214 aa9.31□□□□□ -0.92
PTCH1-215ENST00000547672 CDKN2A-AS1Q9UH64 79 aa9.31□□□□□ -0.92
PTCH1-215ENST00000547672 PKD1L1Q8TDX9 2849 aa9.3□□□□□ -0.92
PTCH1-215ENST00000547672 IGLV4-60A0A075B6I1 120 aa9.3□□□□□ -0.92
PTCH1-215ENST00000547672 NHLRC4P0CG21 123 aaPredicted RBP9.3□□□□□ -0.92
PTCH1-215ENST00000547672 GCSHP23434 173 aa9.3□□□□□ -0.92
PTCH1-215ENST00000547672 LYPD5Q6UWN5 251 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms