RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 TRAV8-3A0A0A6YYJ7 113 aa10.25□□□□□ -0.77
CLIP1-216ENST00000541410 SEC11AP67812 179 aa10.25□□□□□ -0.77
CLIP1-216ENST00000541410 DAZ4Q86SG3 579 aaKnown RBP10.25□□□□□ -0.77
CLIP1-216ENST00000541410 PRIMA1Q86XR5 153 aa10.25□□□□□ -0.77
CLIP1-216ENST00000541410 DAZ3Q9NR90 486 aaKnown RBP10.25□□□□□ -0.77
CLIP1-216ENST00000541410 TRBV6-4A0A1B0GX49 114 aa10.25□□□□□ -0.77
CLIP1-216ENST00000541410 TMEM223A0PJW6 202 aa10.25□□□□□ -0.77
CLIP1-216ENST00000541410 PTTG1IPP53801 180 aa10.25□□□□□ -0.77
CLIP1-216ENST00000541410 A0A096LPF7 62 aa10.24□□□□□ -0.77
CLIP1-216ENST00000541410 A8MZ25 164 aa10.24□□□□□ -0.77
CLIP1-216ENST00000541410 CEND1Q8N111 149 aa10.24□□□□□ -0.77
CLIP1-216ENST00000541410 COL6A5A8TX70 2615 aa10.24□□□□□ -0.77
CLIP1-216ENST00000541410 J3QQQ9 107 aa10.24□□□□□ -0.77
CLIP1-216ENST00000541410 APOC4P55056 127 aa10.24□□□□□ -0.77
CLIP1-216ENST00000541410 IGHV4-28A0A0C4DH34 117 aa10.23□□□□□ -0.77
CLIP1-216ENST00000541410 A6NDN8 102 aa10.23□□□□□ -0.77
CLIP1-216ENST00000541410 VAMP3Q15836 100 aa10.23□□□□□ -0.77
CLIP1-216ENST00000541410 NHP2Q9NX24 153 aaKnown RBP10.23□□□□□ -0.77
CLIP1-216ENST00000541410 KRTAP10-11P60412 298 aa10.23□□□□□ -0.77
CLIP1-216ENST00000541410 MRPS36P82909 103 aaKnown RBP10.23□□□□□ -0.77
CLIP1-216ENST00000541410 KIR2DL5BQ8NHK3 375 aa10.23□□□□□ -0.77
CLIP1-216ENST00000541410 SPINK8P0C7L1 97 aa10.22□□□□□ -0.77
CLIP1-216ENST00000541410 LGALS3P17931 250 aaKnown RBP10.22□□□□□ -0.77
CLIP1-216ENST00000541410 TRAV13-1A0A0B4J241 112 aa10.22□□□□□ -0.77
CLIP1-216ENST00000541410 CELA1Q9UNI1 258 aa10.22□□□□□ -0.77
CLIP1-216ENST00000541410 GYPEP15421 78 aa10.21□□□□□ -0.77
CLIP1-216ENST00000541410 COX6A2Q02221 97 aa10.21□□□□□ -0.77
CLIP1-216ENST00000541410 AMMECR1LQ6DCA0 310 aa10.21□□□□□ -0.77
CLIP1-216ENST00000541410 A0A0J9YY99 117 aa10.21□□□□□ -0.78
CLIP1-216ENST00000541410 SMIM9A6NGZ8 99 aa10.21□□□□□ -0.78
CLIP1-216ENST00000541410 H3BUT2 72 aa10.21□□□□□ -0.78
CLIP1-216ENST00000541410 UBE2L6O14933 153 aa10.21□□□□□ -0.78
CLIP1-216ENST00000541410 UBE2D1P51668 147 aa10.21□□□□□ -0.78
CLIP1-216ENST00000541410 GAGE6Q13070 117 aa10.21□□□□□ -0.78
CLIP1-216ENST00000541410 SBSPONQ8IVN8 264 aa10.21□□□□□ -0.78
CLIP1-216ENST00000541410 IGKV3OR2-268A0A0C4DH90 116 aa10.2□□□□□ -0.78
CLIP1-216ENST00000541410 SRSF9Q13242 221 aaKnown RBP eCLIP10.2□□□□□ -0.78
CLIP1-216ENST00000541410 LINC00612Q8N6U2 182 aa10.2□□□□□ -0.78
CLIP1-216ENST00000541410 TMEM243Q9BU79 118 aa10.2□□□□□ -0.78
CLIP1-216ENST00000541410 GEMIN7Q9H840 131 aaKnown RBP10.2□□□□□ -0.78
CLIP1-216ENST00000541410 CDKN2A-AS1Q9UH64 79 aa10.2□□□□□ -0.78
CLIP1-216ENST00000541410 CCL25O15444 150 aa10.19□□□□□ -0.78
CLIP1-216ENST00000541410 IGHV3-30-3P0DP02 117 aa10.19□□□□□ -0.78
CLIP1-216ENST00000541410 TIMM21Q9BVV7 248 aa10.19□□□□□ -0.78
CLIP1-216ENST00000541410 TM2D2Q9BX73 214 aa10.19□□□□□ -0.78
CLIP1-216ENST00000541410 LEPROTO15243 131 aa10.19□□□□□ -0.78
CLIP1-216ENST00000541410 RETNQ9HD89 108 aa10.19□□□□□ -0.78
CLIP1-216ENST00000541410 ANK2Q01484 3957 aa10.19□□□□□ -0.78
CLIP1-216ENST00000541410 TINCRA0A1B0GVN0 87 aa10.18□□□□□ -0.78
CLIP1-216ENST00000541410 H3BRM9 83 aa10.18□□□□□ -0.78
CLIP1-216ENST00000541410 WIPF1O43516 503 aa10.18□□□□□ -0.78
CLIP1-216ENST00000541410 CRYBA4P53673 196 aa10.18□□□□□ -0.78
CLIP1-216ENST00000541410 OR5A1Q8NGJ0 315 aa10.18□□□□□ -0.78
CLIP1-216ENST00000541410 NOTCH1P46531 2555 aa10.18□□□□□ -0.78
CLIP1-216ENST00000541410 SMIM13P0DJ93 91 aa10.18□□□□□ -0.78
CLIP1-216ENST00000541410 HTN3P15516 51 aa10.18□□□□□ -0.78
CLIP1-216ENST00000541410 Q8NAQ8 132 aa10.18□□□□□ -0.78
CLIP1-216ENST00000541410 CHCHD5Q9BSY4 110 aa10.18□□□□□ -0.78
CLIP1-216ENST00000541410 CIDEAO60543 219 aa10.17□□□□□ -0.78
CLIP1-216ENST00000541410 GTSF1LQ9H1H1 148 aa10.17□□□□□ -0.78
CLIP1-216ENST00000541410 CDC42SE2Q9NRR3 84 aa10.17□□□□□ -0.78
CLIP1-216ENST00000541410 TRBV6-8A0A0A6YYG3 113 aa10.17□□□□□ -0.78
CLIP1-216ENST00000541410 LINC00242Q5T6M2 205 aa10.17□□□□□ -0.78
CLIP1-216ENST00000541410 IGLV4-60A0A075B6I1 120 aa10.16□□□□□ -0.78
CLIP1-216ENST00000541410 C9orf118A6NHY6 69 aa10.16□□□□□ -0.78
CLIP1-216ENST00000541410 DAD1P61803 113 aa10.16□□□□□ -0.78
CLIP1-216ENST00000541410 C10orf126Q8N4M7 172 aa10.16□□□□□ -0.78
CLIP1-216ENST00000541410 CMYA5Q8N3K9 4069 aa10.16□□□□□ -0.78
CLIP1-216ENST00000541410 UBE2V1Q13404 147 aa10.16□□□□□ -0.78
CLIP1-216ENST00000541410 LYRM9A8MSI8 78 aa10.15□□□□□ -0.78
CLIP1-216ENST00000541410 G3V4G9 280 aa10.15□□□□□ -0.78
CLIP1-216ENST00000541410 TAL2Q16559 108 aa10.15□□□□□ -0.78
CLIP1-216ENST00000541410 ATP6V0E2Q8NHE4 81 aa10.15□□□□□ -0.78
CLIP1-216ENST00000541410 RNF183Q96D59 192 aa10.15□□□□□ -0.78
CLIP1-216ENST00000541410 PRO0255Q9UI72 69 aa10.15□□□□□ -0.78
CLIP1-216ENST00000541410 IGHV1-58A0A0C4DH39 117 aa10.15□□□□□ -0.79
CLIP1-216ENST00000541410 PAX4O43316 350 aa10.15□□□□□ -0.79
CLIP1-216ENST00000541410 C12orf74Q32Q52 190 aa10.15□□□□□ -0.79
CLIP1-216ENST00000541410 SHISA2Q6UWI4 295 aa10.14□□□□□ -0.79
CLIP1-216ENST00000541410 TMEM101Q96IK0 257 aa10.14□□□□□ -0.79
CLIP1-216ENST00000541410 VSIG2Q96IQ7 327 aa10.14□□□□□ -0.79
CLIP1-216ENST00000541410 CSDC2Q9Y534 153 aaKnown RBP10.14□□□□□ -0.79
CLIP1-216ENST00000541410 TRAV26-1A0A087WT03 109 aa10.13□□□□□ -0.79
CLIP1-216ENST00000541410 F5H768 121 aa10.13□□□□□ -0.79
CLIP1-216ENST00000541410 PRB2P02812 416 aaPredicted RBP10.13□□□□□ -0.79
CLIP1-216ENST00000541410 MIFP14174 115 aa10.13□□□□□ -0.79
CLIP1-216ENST00000541410 TMEM262E9PQX1 116 aa10.12□□□□□ -0.79
CLIP1-216ENST00000541410 TENM3Q9P273 2699 aa10.12□□□□□ -0.79
CLIP1-216ENST00000541410 APOMO95445 188 aa10.12□□□□□ -0.79
CLIP1-216ENST00000541410 NDUFA12Q9UI09 145 aa10.12□□□□□ -0.79
CLIP1-216ENST00000541410 A0A0J9YXY3 114 aa10.11□□□□□ -0.79
CLIP1-216ENST00000541410 TIRAPP58753 221 aa10.11□□□□□ -0.79
CLIP1-216ENST00000541410 SAMD5Q5TGI4 173 aa10.11□□□□□ -0.79
CLIP1-216ENST00000541410 IGHV3-30P01768 117 aa10.11□□□□□ -0.79
CLIP1-216ENST00000541410 IGHV3-30-5P0DP03 117 aa10.11□□□□□ -0.79
CLIP1-216ENST00000541410 NPC2P61916 151 aa10.11□□□□□ -0.79
CLIP1-216ENST00000541410 SFTA2Q6UW10 78 aa10.11□□□□□ -0.79
CLIP1-216ENST00000541410 CLPSL2Q6UWE3 100 aa10.11□□□□□ -0.79
CLIP1-216ENST00000541410 ZNF625Q96I27 306 aaPredicted RBP10.11□□□□□ -0.79
CLIP1-216ENST00000541410 SPART-AS1P0CW21 52 aa10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 94.3 ms