RNA–Protein interactions for RNA: ENST00000539506.5

SFSWAP-208, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 3,149 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-208ENST00000539506 SMIM20Q8N5G0 67 aa9.15□□□□□ -0.94
SFSWAP-208ENST00000539506 H7C423 109 aa9.14□□□□□ -0.95
SFSWAP-208ENST00000539506 I3L3M4 83 aa9.14□□□□□ -0.95
SFSWAP-208ENST00000539506 NDUFA7O95182 113 aa9.14□□□□□ -0.95
SFSWAP-208ENST00000539506 H3BMM0 161 aa9.14□□□□□ -0.95
SFSWAP-208ENST00000539506 DEFB131AP59861 70 aa9.14□□□□□ -0.95
SFSWAP-208ENST00000539506 UBE2WQ96B02 151 aa9.14□□□□□ -0.95
SFSWAP-208ENST00000539506 YAE1D1Q9NRH1 226 aa9.14□□□□□ -0.95
SFSWAP-208ENST00000539506 ICOSQ9Y6W8 199 aa9.14□□□□□ -0.95
SFSWAP-208ENST00000539506 M0R2P5 195 aa9.14□□□□□ -0.95
SFSWAP-208ENST00000539506 IFITM1P13164 125 aa9.14□□□□□ -0.95
SFSWAP-208ENST00000539506 FAM104AQ969W3 186 aa9.14□□□□□ -0.95
SFSWAP-208ENST00000539506 CCDC168Q8NDH2 2452 aa9.12□□□□□ -0.95
SFSWAP-208ENST00000539506 IGHV3OR16-12A0A075B7B8 117 aa9.12□□□□□ -0.95
SFSWAP-208ENST00000539506 RPL13AP40429 203 aaKnown RBP9.12□□□□□ -0.95
SFSWAP-208ENST00000539506 NSUN5P1Q3KNT7 163 aa9.12□□□□□ -0.95
SFSWAP-208ENST00000539506 TMEM61Q8N0U2 210 aa9.12□□□□□ -0.95
SFSWAP-208ENST00000539506 ITPR3Q14573 2671 aa9.12□□□□□ -0.95
SFSWAP-208ENST00000539506 ZNF843Q8N446 348 aa9.12□□□□□ -0.95
SFSWAP-208ENST00000539506 LITAFQ99732 161 aa9.12□□□□□ -0.95
SFSWAP-208ENST00000539506 TRBV10-2A0A0K0K1G8 114 aa9.11□□□□□ -0.95
SFSWAP-208ENST00000539506 RS1O15537 224 aa9.11□□□□□ -0.95
SFSWAP-208ENST00000539506 FN1P02751 2386 aaKnown RBP9.11□□□□□ -0.95
SFSWAP-208ENST00000539506 A0A0B4J2C4 111 aa9.11□□□□□ -0.95
SFSWAP-208ENST00000539506 GAGE12JA6NER3 117 aa9.11□□□□□ -0.95
SFSWAP-208ENST00000539506 GAGE7O76087 117 aa9.11□□□□□ -0.95
SFSWAP-208ENST00000539506 GAGE12FP0CL80 117 aa9.11□□□□□ -0.95
SFSWAP-208ENST00000539506 GAGE12GP0CL81 117 aa9.11□□□□□ -0.95
SFSWAP-208ENST00000539506 GAGE12IP0CL82 117 aa9.11□□□□□ -0.95
SFSWAP-208ENST00000539506 GAGE4Q13068 117 aa9.11□□□□□ -0.95
SFSWAP-208ENST00000539506 KRTAP1-3Q8IUG1 177 aa9.11□□□□□ -0.95
SFSWAP-208ENST00000539506 Q8N2B8 174 aa9.11□□□□□ -0.95
SFSWAP-208ENST00000539506 TENM4Q6N022 2769 aa9.1□□□□□ -0.95
SFSWAP-208ENST00000539506 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.1□□□□□ -0.95
SFSWAP-208ENST00000539506 CDKN2A-AS1Q9UH64 79 aa9.1□□□□□ -0.95
SFSWAP-208ENST00000539506 A8MTW9 85 aa9.1□□□□□ -0.95
SFSWAP-208ENST00000539506 DEFB113Q30KQ7 82 aa9.1□□□□□ -0.95
SFSWAP-208ENST00000539506 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.1□□□□□ -0.95
SFSWAP-208ENST00000539506 Q96MF0 132 aa9.1□□□□□ -0.95
SFSWAP-208ENST00000539506 TRGV11A0A075B6L2 103 aa9.09□□□□□ -0.95
SFSWAP-208ENST00000539506 LINC00467Q9BRT7 94 aa9.09□□□□□ -0.95
SFSWAP-208ENST00000539506 RHOHQ15669 191 aa9.09□□□□□ -0.95
SFSWAP-208ENST00000539506 IGHV3-53P01767 116 aa9.08□□□□□ -0.96
SFSWAP-208ENST00000539506 COX6A2Q02221 97 aa9.08□□□□□ -0.96
SFSWAP-208ENST00000539506 MEIG1Q5JSS6 88 aa9.08□□□□□ -0.96
SFSWAP-208ENST00000539506 TRAV13-1A0A0B4J241 112 aa9.07□□□□□ -0.96
SFSWAP-208ENST00000539506 TRAV25A0A0B4J276 109 aa9.07□□□□□ -0.96
SFSWAP-208ENST00000539506 IGHV1-58A0A0C4DH39 117 aa9.07□□□□□ -0.96
SFSWAP-208ENST00000539506 IGKV3OR2-268A0A0C4DH90 116 aa9.07□□□□□ -0.96
SFSWAP-208ENST00000539506 MAP6D1Q9H9H5 199 aa9.07□□□□□ -0.96
SFSWAP-208ENST00000539506 TRBV30A0A0K0K1B3 111 aa9.07□□□□□ -0.96
SFSWAP-208ENST00000539506 M0QXV9 152 aa9.07□□□□□ -0.96
SFSWAP-208ENST00000539506 COX6CP09669 75 aa9.07□□□□□ -0.96
SFSWAP-208ENST00000539506 KHDC1LQ5JSQ8 128 aa9.07□□□□□ -0.96
SFSWAP-208ENST00000539506 C4orf3Q8WVX3 66 aa9.07□□□□□ -0.96
SFSWAP-208ENST00000539506 NBEAL2Q6ZNJ1 2754 aa9.06□□□□□ -0.96
SFSWAP-208ENST00000539506 DGAT2L7PQ6IED9 249 aa9.06□□□□□ -0.96
SFSWAP-208ENST00000539506 C11orf72Q8NBR9 251 aa9.06□□□□□ -0.96
SFSWAP-208ENST00000539506 VSIG2Q96IQ7 327 aa9.06□□□□□ -0.96
SFSWAP-208ENST00000539506 DEFB114Q30KQ6 69 aa9.06□□□□□ -0.96
SFSWAP-208ENST00000539506 SETXQ7Z333 2677 aaKnown RBP9.05□□□□□ -0.96
SFSWAP-208ENST00000539506 Q9H8V8 135 aa9.05□□□□□ -0.96
SFSWAP-208ENST00000539506 FLNAP21333 2647 aaKnown RBP9.05□□□□□ -0.96
SFSWAP-208ENST00000539506 MIAQ16674 131 aa9.05□□□□□ -0.96
SFSWAP-208ENST00000539506 C11orf44Q8N8P7 122 aa9.05□□□□□ -0.96
SFSWAP-208ENST00000539506 EDA2RQ9HAV5 297 aa9.05□□□□□ -0.96
SFSWAP-208ENST00000539506 ANK3Q12955 4377 aaKnown RBP9.04□□□□□ -0.96
SFSWAP-208ENST00000539506 MRPS36P82909 103 aaKnown RBP9.04□□□□□ -0.96
SFSWAP-208ENST00000539506 Q9HAA7 133 aa9.04□□□□□ -0.96
SFSWAP-208ENST00000539506 PIK3CD-AS1Q5SR53 167 aa9.04□□□□□ -0.96
SFSWAP-208ENST00000539506 CHCHD7Q9BUK0 85 aa9.04□□□□□ -0.96
SFSWAP-208ENST00000539506 TMEM101Q96IK0 257 aa9.03□□□□□ -0.96
SFSWAP-208ENST00000539506 LINC01587Q99440 93 aa9.03□□□□□ -0.96
SFSWAP-208ENST00000539506 PEMTQ9UBM1 199 aa9.03□□□□□ -0.96
SFSWAP-208ENST00000539506 PDZD2O15018 2839 aa9.03□□□□□ -0.96
SFSWAP-208ENST00000539506 FAM236AA0A1B0GUQ0 79 aa9.03□□□□□ -0.96
SFSWAP-208ENST00000539506 FAM236BA0A1B0GV22 79 aa9.03□□□□□ -0.96
SFSWAP-208ENST00000539506 LINC00694P0DN24 101 aa9.03□□□□□ -0.96
SFSWAP-208ENST00000539506 WFDC11Q8NEX6 87 aa9.03□□□□□ -0.96
SFSWAP-208ENST00000539506 UBE2D4Q9Y2X8 147 aa9.03□□□□□ -0.96
SFSWAP-208ENST00000539506 HIST2H2BCQ6DN03 193 aa9.02□□□□□ -0.96
SFSWAP-208ENST00000539506 ODF3L2Q3SX64 289 aa9.02□□□□□ -0.97
SFSWAP-208ENST00000539506 LRRC75A-AS1Q8N1F1 130 aa9.02□□□□□ -0.97
SFSWAP-208ENST00000539506 XCL2Q9UBD3 114 aa9.02□□□□□ -0.97
SFSWAP-208ENST00000539506 LST1O00453 97 aa9.02□□□□□ -0.97
SFSWAP-208ENST00000539506 DYNLRB2Q8TF09 96 aa9.02□□□□□ -0.97
SFSWAP-208ENST00000539506 ESM1Q9NQ30 184 aa9.02□□□□□ -0.97
SFSWAP-208ENST00000539506 PYGO1Q9Y3Y4 419 aa9.02□□□□□ -0.97
SFSWAP-208ENST00000539506 A0A1W2PRX2 142 aa9.01□□□□□ -0.97
SFSWAP-208ENST00000539506 SOSTDC1Q6X4U4 206 aa9.01□□□□□ -0.97
SFSWAP-208ENST00000539506 ZNF415Q09FC8 603 aa9□□□□□ -0.97
SFSWAP-208ENST00000539506 SMCR5Q8TEV8 140 aa9□□□□□ -0.97
SFSWAP-208ENST00000539506 KLK5Q9Y337 293 aaPredicted RBP9□□□□□ -0.97
SFSWAP-208ENST00000539506 MTORP42345 2549 aa9□□□□□ -0.97
SFSWAP-208ENST00000539506 DNAJC9-AS1A6NH13 148 aa9□□□□□ -0.97
SFSWAP-208ENST00000539506 ACANP16112 2415 aa8.99□□□□□ -0.97
SFSWAP-208ENST00000539506 BEAN1Q3B7T3 259 aa8.99□□□□□ -0.97
SFSWAP-208ENST00000539506 C1orf158Q8N1D5 194 aa8.99□□□□□ -0.97
SFSWAP-208ENST00000539506 TOMM7Q9P0U1 55 aa8.99□□□□□ -0.97
SFSWAP-208ENST00000539506 LINC00308Q8TCZ7 52 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 85.1 ms