RNA–Protein interactions for RNA: ENST00000536990.5

SYNE1-234, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 3,003 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-234ENST00000536990 IGHV3-38A0A0C4DH36 116 aa8.34□□□□□ -1.07
SYNE1-234ENST00000536990 TEX29Q8N6K0 151 aa8.34□□□□□ -1.07
SYNE1-234ENST00000536990 IGLV5-45A0A087WSX0 123 aa8.33□□□□□ -1.08
SYNE1-234ENST00000536990 BEAN1Q3B7T3 259 aa8.33□□□□□ -1.08
SYNE1-234ENST00000536990 HIST2H2BDQ6DRA6 164 aa8.33□□□□□ -1.08
SYNE1-234ENST00000536990 DNAJC30Q96LL9 226 aa8.33□□□□□ -1.08
SYNE1-234ENST00000536990 CDKN2A-AS1Q9UH64 79 aa8.33□□□□□ -1.08
SYNE1-234ENST00000536990 CRLF1O75462 422 aa8.33□□□□□ -1.08
SYNE1-234ENST00000536990 C2orf82Q6UX34 121 aa8.33□□□□□ -1.08
SYNE1-234ENST00000536990 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP8.33□□□□□ -1.08
SYNE1-234ENST00000536990 UBE2WQ96B02 151 aa8.33□□□□□ -1.08
SYNE1-234ENST00000536990 YAE1D1Q9NRH1 226 aa8.33□□□□□ -1.08
SYNE1-234ENST00000536990 TIRAPP58753 221 aa8.32□□□□□ -1.08
SYNE1-234ENST00000536990 TLN2Q9Y4G6 2542 aa8.32□□□□□ -1.08
SYNE1-234ENST00000536990 TRAV4A0A0B4J268 109 aa8.32□□□□□ -1.08
SYNE1-234ENST00000536990 NDUFA1O15239 70 aa8.32□□□□□ -1.08
SYNE1-234ENST00000536990 INSP01308 110 aa8.32□□□□□ -1.08
SYNE1-234ENST00000536990 IFITM1P13164 125 aa8.32□□□□□ -1.08
SYNE1-234ENST00000536990 CLEC2BQ92478 149 aa8.32□□□□□ -1.08
SYNE1-234ENST00000536990 TMEM101Q96IK0 257 aa8.32□□□□□ -1.08
SYNE1-234ENST00000536990 ANAPC13Q9BS18 74 aa8.32□□□□□ -1.08
SYNE1-234ENST00000536990 UBR5O95071 2799 aaPredicted RBP8.32□□□□□ -1.08
SYNE1-234ENST00000536990 TRAV8-4A0A0B4J246 113 aa8.32□□□□□ -1.08
SYNE1-234ENST00000536990 H3BT86 120 aa8.32□□□□□ -1.08
SYNE1-234ENST00000536990 LST1O00453 97 aa8.32□□□□□ -1.08
SYNE1-234ENST00000536990 RS1O15537 224 aa8.32□□□□□ -1.08
SYNE1-234ENST00000536990 COX6CP09669 75 aa8.32□□□□□ -1.08
SYNE1-234ENST00000536990 NHLRC4P0CG21 123 aaPredicted RBP8.31□□□□□ -1.08
SYNE1-234ENST00000536990 DAND5Q8N907 189 aa8.31□□□□□ -1.08
SYNE1-234ENST00000536990 COX6A2Q02221 97 aa8.31□□□□□ -1.08
SYNE1-234ENST00000536990 WNK1Q9H4A3 2382 aa8.31□□□□□ -1.08
SYNE1-234ENST00000536990 SNCGO76070 127 aa8.3□□□□□ -1.08
SYNE1-234ENST00000536990 TMEM86BQ8N661 226 aa8.3□□□□□ -1.08
SYNE1-234ENST00000536990 IGHV3OR16-12A0A075B7B8 117 aa8.3□□□□□ -1.08
SYNE1-234ENST00000536990 GAGE2BQ13066 116 aa8.3□□□□□ -1.08
SYNE1-234ENST00000536990 GAGE2EQ4V326 116 aa8.3□□□□□ -1.08
SYNE1-234ENST00000536990 CITED2Q99967 270 aaPredicted RBP8.3□□□□□ -1.08
SYNE1-234ENST00000536990 XCL2Q9UBD3 114 aa8.3□□□□□ -1.08
SYNE1-234ENST00000536990 GAGE2DQ9UEU5 116 aa8.3□□□□□ -1.08
SYNE1-234ENST00000536990 KRTAP1-3Q8IUG1 177 aa8.29□□□□□ -1.08
SYNE1-234ENST00000536990 IGLV5-39A0A0G2JS06 123 aa8.29□□□□□ -1.08
SYNE1-234ENST00000536990 DEFB121Q5J5C9 76 aa8.29□□□□□ -1.08
SYNE1-234ENST00000536990 STHQ8IWL8 128 aa8.29□□□□□ -1.08
SYNE1-234ENST00000536990 C11orf44Q8N8P7 122 aa8.29□□□□□ -1.08
SYNE1-234ENST00000536990 SONP18583 2426 aaKnown RBP8.29□□□□□ -1.08
SYNE1-234ENST00000536990 ODF3L2Q3SX64 289 aa8.28□□□□□ -1.08
SYNE1-234ENST00000536990 LINC00242Q5T6M2 205 aa8.28□□□□□ -1.08
SYNE1-234ENST00000536990 Q6Q795 121 aa8.28□□□□□ -1.08
SYNE1-234ENST00000536990 C15orf53Q8NAA6 179 aa8.28□□□□□ -1.08
SYNE1-234ENST00000536990 TRAV25A0A0B4J276 109 aa8.28□□□□□ -1.08
SYNE1-234ENST00000536990 LINC00308Q8TCZ7 52 aa8.28□□□□□ -1.08
SYNE1-234ENST00000536990 A0A1W2PRX2 142 aa8.27□□□□□ -1.08
SYNE1-234ENST00000536990 NDUFV3P56181 108 aaKnown RBP8.27□□□□□ -1.08
SYNE1-234ENST00000536990 DGAT2L7PQ6IED9 249 aa8.27□□□□□ -1.08
SYNE1-234ENST00000536990 DNAJC9-AS1A6NH13 148 aa8.27□□□□□ -1.09
SYNE1-234ENST00000536990 FAM19A3Q7Z5A8 133 aa8.27□□□□□ -1.09
SYNE1-234ENST00000536990 Q9H8V8 135 aa8.27□□□□□ -1.09
SYNE1-234ENST00000536990 CHD6Q8TD26 2715 aa8.27□□□□□ -1.09
SYNE1-234ENST00000536990 LINC00694P0DN24 101 aa8.27□□□□□ -1.09
SYNE1-234ENST00000536990 HERVK_113P63121 156 aa8.27□□□□□ -1.09
SYNE1-234ENST00000536990 CIRBPQ14011 172 aaKnown RBP8.26□□□□□ -1.09
SYNE1-234ENST00000536990 IL17DQ8TAD2 202 aa8.26□□□□□ -1.09
SYNE1-234ENST00000536990 CCL24O00175 119 aa8.26□□□□□ -1.09
SYNE1-234ENST00000536990 C1orf158Q8N1D5 194 aa8.26□□□□□ -1.09
SYNE1-234ENST00000536990 EPG5Q9HCE0 2579 aa8.26□□□□□ -1.09
SYNE1-234ENST00000536990 APCP25054 2843 aa8.26□□□□□ -1.09
SYNE1-234ENST00000536990 FAM240AA0A1B0GVK7 77 aa8.25□□□□□ -1.09
SYNE1-234ENST00000536990 SMIM1B2RUZ4 78 aa8.25□□□□□ -1.09
SYNE1-234ENST00000536990 SOSTDC1Q6X4U4 206 aa8.25□□□□□ -1.09
SYNE1-234ENST00000536990 WFDC11Q8NEX6 87 aa8.25□□□□□ -1.09
SYNE1-234ENST00000536990 NDUFA7O95182 113 aa8.25□□□□□ -1.09
SYNE1-234ENST00000536990 GAGE5Q13069 117 aa8.25□□□□□ -1.09
SYNE1-234ENST00000536990 GAGE6Q13070 117 aa8.25□□□□□ -1.09
SYNE1-234ENST00000536990 ZNF469Q96JG9 3925 aaPredicted RBP8.25□□□□□ -1.09
SYNE1-234ENST00000536990 TRGV1A0A0A0MS02 117 aa8.24□□□□□ -1.09
SYNE1-234ENST00000536990 MRPL23Q16540 153 aaKnown RBP8.24□□□□□ -1.09
SYNE1-234ENST00000536990 ZNF625Q96I27 306 aaPredicted RBP8.24□□□□□ -1.09
SYNE1-234ENST00000536990 AKAP9Q99996 3911 aa8.24□□□□□ -1.09
SYNE1-234ENST00000536990 ITPR3Q14573 2671 aa8.24□□□□□ -1.09
SYNE1-234ENST00000536990 NTM-AS1Q6ZSK4 140 aa8.24□□□□□ -1.09
SYNE1-234ENST00000536990 CSDC2Q9Y534 153 aaKnown RBP8.24□□□□□ -1.09
SYNE1-234ENST00000536990 A0A0U1RRA0 63 aa8.23□□□□□ -1.09
SYNE1-234ENST00000536990 F5H768 121 aa8.23□□□□□ -1.09
SYNE1-234ENST00000536990 TTC32Q5I0X7 151 aa8.23□□□□□ -1.09
SYNE1-234ENST00000536990 SHISA2Q6UWI4 295 aa8.23□□□□□ -1.09
SYNE1-234ENST00000536990 ESM1Q9NQ30 184 aa8.23□□□□□ -1.09
SYNE1-234ENST00000536990 NOTCH3Q9UM47 2321 aa8.23□□□□□ -1.09
SYNE1-234ENST00000536990 TRAV13-1A0A0B4J241 112 aa8.22□□□□□ -1.09
SYNE1-234ENST00000536990 COX7A2LO14548 114 aa8.22□□□□□ -1.09
SYNE1-234ENST00000536990 CCDC168Q8NDH2 2452 aa8.22□□□□□ -1.09
SYNE1-234ENST00000536990 TRBV10-1A0A0K0K1A3 114 aa8.21□□□□□ -1.09
SYNE1-234ENST00000536990 K7EQD1 137 aa8.21□□□□□ -1.09
SYNE1-234ENST00000536990 RPL36AP83881 106 aaKnown RBP8.21□□□□□ -1.09
SYNE1-234ENST00000536990 RPL36ALQ969Q0 106 aaKnown RBP8.21□□□□□ -1.09
SYNE1-234ENST00000536990 NF1P21359 2839 aa8.21□□□□□ -1.09
SYNE1-234ENST00000536990 B5MCH6 92 aa8.21□□□□□ -1.1
SYNE1-234ENST00000536990 DAZ2Q13117 558 aaKnown RBP8.21□□□□□ -1.1
SYNE1-234ENST00000536990 Q6ZTI0 123 aa8.21□□□□□ -1.1
SYNE1-234ENST00000536990 DAZ4Q86SG3 579 aaKnown RBP8.21□□□□□ -1.1
SYNE1-234ENST00000536990 DAZ3Q9NR90 486 aaKnown RBP8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms