RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 SNCGO76070 127 aa13.91□□□□□ -0.18
VPS28-213ENST00000530983 LINC01620Q4KN68 170 aa13.91□□□□□ -0.18
VPS28-213ENST00000530983 LRRC75A-AS1Q8N1F1 130 aa13.91□□□□□ -0.18
VPS28-213ENST00000530983 RS1O15537 224 aa13.9□□□□□ -0.18
VPS28-213ENST00000530983 NDUFV3P56181 108 aaKnown RBP13.9□□□□□ -0.18
VPS28-213ENST00000530983 USP24Q9UPU5 2620 aa13.9□□□□□ -0.18
VPS28-213ENST00000530983 TRIAP1O43715 76 aa13.9□□□□□ -0.18
VPS28-213ENST00000530983 MIAQ16674 131 aa13.9□□□□□ -0.18
VPS28-213ENST00000530983 DEFB113Q30KQ7 82 aa13.9□□□□□ -0.18
VPS28-213ENST00000530983 BBC3Q96PG8 261 aaPredicted RBP13.9□□□□□ -0.18
VPS28-213ENST00000530983 CHD6Q8TD26 2715 aa13.89□□□□□ -0.19
VPS28-213ENST00000530983 NAV2Q8IVL1 2488 aa13.89□□□□□ -0.19
VPS28-213ENST00000530983 TRBV30A0A0K0K1B3 111 aa13.89□□□□□ -0.19
VPS28-213ENST00000530983 TEX49A0A1B0GTD5 131 aa13.89□□□□□ -0.19
VPS28-213ENST00000530983 UBR5O95071 2799 aaPredicted RBP13.89□□□□□ -0.19
VPS28-213ENST00000530983 ATXN8Q156A1 80 aa13.89□□□□□ -0.19
VPS28-213ENST00000530983 RPL13AP40429 203 aaKnown RBP13.87□□□□□ -0.19
VPS28-213ENST00000530983 ZNF843Q8N446 348 aa13.87□□□□□ -0.19
VPS28-213ENST00000530983 XCL2Q9UBD3 114 aa13.87□□□□□ -0.19
VPS28-213ENST00000530983 CDKN2A-AS1Q9UH64 79 aa13.87□□□□□ -0.19
VPS28-213ENST00000530983 ODF3L2Q3SX64 289 aa13.87□□□□□ -0.19
VPS28-213ENST00000530983 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.87□□□□□ -0.19
VPS28-213ENST00000530983 NPC2P61916 151 aa13.86□□□□□ -0.19
VPS28-213ENST00000530983 Q6Q795 121 aa13.86□□□□□ -0.19
VPS28-213ENST00000530983 IGLV5-45A0A087WSX0 123 aa13.85□□□□□ -0.19
VPS28-213ENST00000530983 CCDC179H3BU77 68 aa13.85□□□□□ -0.19
VPS28-213ENST00000530983 Q6ZSV7 163 aa13.85□□□□□ -0.19
VPS28-213ENST00000530983 TRBV10-2A0A0K0K1G8 114 aa13.85□□□□□ -0.19
VPS28-213ENST00000530983 ICOSQ9Y6W8 199 aa13.85□□□□□ -0.19
VPS28-213ENST00000530983 TRAV8-4A0A0B4J246 113 aa13.84□□□□□ -0.19
VPS28-213ENST00000530983 IFITM1P13164 125 aa13.84□□□□□ -0.19
VPS28-213ENST00000530983 TIRAPP58753 221 aa13.84□□□□□ -0.19
VPS28-213ENST00000530983 TTC32Q5I0X7 151 aa13.84□□□□□ -0.19
VPS28-213ENST00000530983 TLN2Q9Y4G6 2542 aa13.84□□□□□ -0.19
VPS28-213ENST00000530983 C1orf158Q8N1D5 194 aa13.84□□□□□ -0.19
VPS28-213ENST00000530983 TMEM101Q96IK0 257 aa13.84□□□□□ -0.19
VPS28-213ENST00000530983 EPG5Q9HCE0 2579 aa13.83□□□□□ -0.19
VPS28-213ENST00000530983 CUBNO60494 3623 aa13.83□□□□□ -0.2
VPS28-213ENST00000530983 IGHV3OR16-12A0A075B7B8 117 aa13.83□□□□□ -0.2
VPS28-213ENST00000530983 IL17DQ8TAD2 202 aa13.83□□□□□ -0.2
VPS28-213ENST00000530983 Q96MF0 132 aa13.83□□□□□ -0.2
VPS28-213ENST00000530983 GAGE12JA6NER3 117 aa13.82□□□□□ -0.2
VPS28-213ENST00000530983 TIMM17BO60830 172 aa13.82□□□□□ -0.2
VPS28-213ENST00000530983 GAGE7O76087 117 aa13.82□□□□□ -0.2
VPS28-213ENST00000530983 GAGE12FP0CL80 117 aa13.82□□□□□ -0.2
VPS28-213ENST00000530983 GAGE12GP0CL81 117 aa13.82□□□□□ -0.2
VPS28-213ENST00000530983 GAGE12IP0CL82 117 aa13.82□□□□□ -0.2
VPS28-213ENST00000530983 COX6A2Q02221 97 aa13.82□□□□□ -0.2
VPS28-213ENST00000530983 GAGE4Q13068 117 aa13.82□□□□□ -0.2
VPS28-213ENST00000530983 C15orf53Q8NAA6 179 aa13.82□□□□□ -0.2
VPS28-213ENST00000530983 DGAT2L7PQ6IED9 249 aa13.82□□□□□ -0.2
VPS28-213ENST00000530983 DAND5Q8N907 189 aa13.82□□□□□ -0.2
VPS28-213ENST00000530983 WNK1Q9H4A3 2382 aa13.82□□□□□ -0.2
VPS28-213ENST00000530983 NDUFA1O15239 70 aa13.81□□□□□ -0.2
VPS28-213ENST00000530983 UBE2WQ96B02 151 aa13.81□□□□□ -0.2
VPS28-213ENST00000530983 LINC00694P0DN24 101 aa13.81□□□□□ -0.2
VPS28-213ENST00000530983 STHQ8IWL8 128 aa13.81□□□□□ -0.2
VPS28-213ENST00000530983 YAE1D1Q9NRH1 226 aa13.81□□□□□ -0.2
VPS28-213ENST00000530983 TRGV1A0A0A0MS02 117 aa13.8□□□□□ -0.2
VPS28-213ENST00000530983 NF1P21359 2839 aa13.8□□□□□ -0.2
VPS28-213ENST00000530983 LINC00242Q5T6M2 205 aa13.8□□□□□ -0.2
VPS28-213ENST00000530983 H7C423 109 aa13.79□□□□□ -0.2
VPS28-213ENST00000530983 C2orf82Q6UX34 121 aa13.79□□□□□ -0.2
VPS28-213ENST00000530983 IGLV5-39A0A0G2JS06 123 aa13.78□□□□□ -0.2
VPS28-213ENST00000530983 MRPL23Q16540 153 aaKnown RBP13.78□□□□□ -0.2
VPS28-213ENST00000530983 KRTAP1-3Q8IUG1 177 aa13.78□□□□□ -0.2
VPS28-213ENST00000530983 TMEM86BQ8N661 226 aa13.78□□□□□ -0.2
VPS28-213ENST00000530983 APCP25054 2843 aa13.78□□□□□ -0.2
VPS28-213ENST00000530983 TRAV25A0A0B4J276 109 aa13.78□□□□□ -0.2
VPS28-213ENST00000530983 NDUFA7O95182 113 aa13.78□□□□□ -0.2
VPS28-213ENST00000530983 HERVK_113P63121 156 aa13.78□□□□□ -0.2
VPS28-213ENST00000530983 C11orf44Q8N8P7 122 aa13.78□□□□□ -0.2
VPS28-213ENST00000530983 NTM-AS1Q6ZSK4 140 aa13.77□□□□□ -0.21
VPS28-213ENST00000530983 Q6ZTI0 123 aa13.77□□□□□ -0.21
VPS28-213ENST00000530983 SONP18583 2426 aaKnown RBP13.77□□□□□ -0.21
VPS28-213ENST00000530983 A0A1W2PRX2 142 aa13.76□□□□□ -0.21
VPS28-213ENST00000530983 COX6CP09669 75 aa13.76□□□□□ -0.21
VPS28-213ENST00000530983 CLEC2BQ92478 149 aa13.76□□□□□ -0.21
VPS28-213ENST00000530983 K7EQD1 137 aa13.76□□□□□ -0.21
VPS28-213ENST00000530983 FAM19A3Q7Z5A8 133 aa13.76□□□□□ -0.21
VPS28-213ENST00000530983 Q9H8V8 135 aa13.76□□□□□ -0.21
VPS28-213ENST00000530983 ITPR3Q14573 2671 aa13.76□□□□□ -0.21
VPS28-213ENST00000530983 H3BT86 120 aa13.75□□□□□ -0.21
VPS28-213ENST00000530983 RPL36AP83881 106 aaKnown RBP13.75□□□□□ -0.21
VPS28-213ENST00000530983 RPL36ALQ969Q0 106 aaKnown RBP13.75□□□□□ -0.21
VPS28-213ENST00000530983 TRBV10-1A0A0K0K1A3 114 aa13.74□□□□□ -0.21
VPS28-213ENST00000530983 SMIM1B2RUZ4 78 aa13.74□□□□□ -0.21
VPS28-213ENST00000530983 CITED2Q99967 270 aaPredicted RBP13.74□□□□□ -0.21
VPS28-213ENST00000530983 CSDC2Q9Y534 153 aaKnown RBP13.74□□□□□ -0.21
VPS28-213ENST00000530983 NIPBLQ6KC79 2804 aaeCLIP13.74□□□□□ -0.21
VPS28-213ENST00000530983 DNAJC9-AS1A6NH13 148 aa13.74□□□□□ -0.21
VPS28-213ENST00000530983 LST1O00453 97 aa13.74□□□□□ -0.21
VPS28-213ENST00000530983 LINC00308Q8TCZ7 52 aa13.74□□□□□ -0.21
VPS28-213ENST00000530983 NBPF19A0A087WUL8 3843 aa13.73□□□□□ -0.21
VPS28-213ENST00000530983 DAZ2Q13117 558 aaKnown RBP13.73□□□□□ -0.21
VPS28-213ENST00000530983 CIRBPQ14011 172 aaKnown RBP13.73□□□□□ -0.21
VPS28-213ENST00000530983 DAZ4Q86SG3 579 aaKnown RBP13.73□□□□□ -0.21
VPS28-213ENST00000530983 ZNF625Q96I27 306 aaPredicted RBP13.73□□□□□ -0.21
VPS28-213ENST00000530983 DAZ3Q9NR90 486 aaKnown RBP13.73□□□□□ -0.21
VPS28-213ENST00000530983 TRAV13-1A0A0B4J241 112 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 83.9 ms