RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-216ENST00000525293 CSAG1Q6PB30 78 aa1.42□□□□□ -2.18
CD44-216ENST00000525293 CASC2Q6XLA1 102 aa1.42□□□□□ -2.18
CD44-216ENST00000525293 ZNF826PQ6ZT77 177 aa1.42□□□□□ -2.18
CD44-216ENST00000525293 Q8N9W7 124 aa1.42□□□□□ -2.18
CD44-216ENST00000525293 C20orf166-AS1Q96NR2 134 aa1.42□□□□□ -2.18
CD44-216ENST00000525293 SMIM14Q96QK8 99 aa1.42□□□□□ -2.18
CD44-216ENST00000525293 LINC00597Q9H2U6 94 aa1.42□□□□□ -2.18
CD44-216ENST00000525293 CDC42SE2Q9NRR3 84 aa1.42□□□□□ -2.18
CD44-216ENST00000525293 GREB1Q4ZG55 1949 aa1.42□□□□□ -2.18
CD44-216ENST00000525293 MUC2Q02817 5179 aa1.42□□□□□ -2.18
CD44-216ENST00000525293 ZFHX4Q86UP3 3567 aa1.42□□□□□ -2.18
CD44-216ENST00000525293 C5P01031 1676 aa1.42□□□□□ -2.18
CD44-216ENST00000525293 MGAMO43451 1857 aa1.41□□□□□ -2.18
CD44-216ENST00000525293 CASP8AP2Q9UKL3 1982 aa1.41□□□□□ -2.18
CD44-216ENST00000525293 LRP5O75197 1615 aa1.41□□□□□ -2.18
CD44-216ENST00000525293 TJP1Q07157 1748 aa1.41□□□□□ -2.18
CD44-216ENST00000525293 LTBP1Q14766 1721 aa1.41□□□□□ -2.18
CD44-216ENST00000525293 LTBP2Q14767 1821 aa1.41□□□□□ -2.18
CD44-216ENST00000525293 SLX4Q8IY92 1834 aa1.41□□□□□ -2.18
CD44-216ENST00000525293 TRPM6Q9BX84 2022 aa1.41□□□□□ -2.18
CD44-216ENST00000525293 IGLV1-50A0A075B6I6 118 aa1.41□□□□□ -2.18
CD44-216ENST00000525293 TRAV23DV6A0A075B6W5 121 aa1.41□□□□□ -2.18
CD44-216ENST00000525293 IGHV3OR16-8A0A075B7F1 116 aa1.41□□□□□ -2.18
CD44-216ENST00000525293 IGKV3D-11A0A0A0MRZ8 115 aa1.41□□□□□ -2.18
CD44-216ENST00000525293 TRBV6-8A0A0A6YYG3 113 aa1.41□□□□□ -2.18
CD44-216ENST00000525293 TRAV1-2A0A0B4J238 106 aa1.41□□□□□ -2.18
CD44-216ENST00000525293 TRAV12-3A0A0B4J271 114 aa1.41□□□□□ -2.18
CD44-216ENST00000525293 PIGBOS1A0A0B4J2F0 54 aa1.41□□□□□ -2.18
CD44-216ENST00000525293 CLPSL1A2RUU4 121 aa1.41□□□□□ -2.18
CD44-216ENST00000525293 MSMBP08118 114 aa1.41□□□□□ -2.18
CD44-216ENST00000525293 IFI6P09912 130 aa1.41□□□□□ -2.18
CD44-216ENST00000525293 KRTAP10-10P60014 251 aa1.41□□□□□ -2.18
CD44-216ENST00000525293 Q8NAQ8 132 aa1.41□□□□□ -2.18
CD44-216ENST00000525293 MUC7Q8TAX7 377 aa1.41□□□□□ -2.18
CD44-216ENST00000525293 CHCHD7Q9BUK0 85 aa1.41□□□□□ -2.18
CD44-216ENST00000525293 V9GYV3 84 aa1.41□□□□□ -2.18
CD44-216ENST00000525293 MUC22E2RYF6 1773 aaPredicted RBP1.41□□□□□ -2.18
CD44-216ENST00000525293 RGPD8O14715 1765 aaPredicted RBP1.41□□□□□ -2.18
CD44-216ENST00000525293 RGPD5Q99666 1765 aa1.41□□□□□ -2.18
CD44-216ENST00000525293 SLIT1O75093 1534 aa1.4□□□□□ -2.18
CD44-216ENST00000525293 DLG5Q8TDM6 1919 aa1.4□□□□□ -2.18
CD44-216ENST00000525293 PLXNB1O43157 2135 aa1.4□□□□□ -2.18
CD44-216ENST00000525293 KIAA2026Q5HYC2 2103 aa1.4□□□□□ -2.18
CD44-216ENST00000525293 MYO9BQ13459 2157 aa1.4□□□□□ -2.19
CD44-216ENST00000525293 MED13Q9UHV7 2174 aa1.4□□□□□ -2.19
CD44-216ENST00000525293 PIKFYVEQ9Y2I7 2098 aa1.4□□□□□ -2.19
CD44-216ENST00000525293 ARHGAP21Q5T5U3 1957 aa1.4□□□□□ -2.19
CD44-216ENST00000525293 GBF1Q92538 1859 aa1.4□□□□□ -2.19
CD44-216ENST00000525293 LOC285556D6RIA3 1793 aa1.4□□□□□ -2.19
CD44-216ENST00000525293 IQGAP1P46940 1657 aa1.4□□□□□ -2.19
CD44-216ENST00000525293 PLCH1Q4KWH8 1693 aa1.4□□□□□ -2.19
CD44-216ENST00000525293 GCC2Q8IWJ2 1684 aa1.4□□□□□ -2.19
CD44-216ENST00000525293 A0A1W2PNM2 257 aa1.4□□□□□ -2.19
CD44-216ENST00000525293 C11orf86A6NJI1 115 aa1.4□□□□□ -2.19
CD44-216ENST00000525293 M0R3E3 92 aa1.4□□□□□ -2.19
CD44-216ENST00000525293 HMGN4O00479 90 aa1.4□□□□□ -2.19
CD44-216ENST00000525293 BPY2O14599 106 aa1.4□□□□□ -2.19
CD44-216ENST00000525293 INSP01308 110 aa1.4□□□□□ -2.19
CD44-216ENST00000525293 IGHV3-33P01772 117 aa1.4□□□□□ -2.19
CD44-216ENST00000525293 ARMS2P0C7Q2 107 aa1.4□□□□□ -2.19
CD44-216ENST00000525293 IGHV1-8P0DP01 117 aa1.4□□□□□ -2.19
CD44-216ENST00000525293 CAMK2N1Q7Z7J9 78 aa1.4□□□□□ -2.19
CD44-216ENST00000525293 LYPD1Q8N2G4 141 aa1.4□□□□□ -2.19
CD44-216ENST00000525293 MIR7-3HGQ8N6C7 128 aa1.4□□□□□ -2.19
CD44-216ENST00000525293 LIMD2Q9BT23 127 aa1.4□□□□□ -2.19
CD44-216ENST00000525293 PRR15LQ9BU68 103 aa1.4□□□□□ -2.19
CD44-216ENST00000525293 RPP21Q9H633 154 aaKnown RBP1.4□□□□□ -2.19
CD44-216ENST00000525293 NDUFA4L2Q9NRX3 87 aa1.4□□□□□ -2.19
CD44-216ENST00000525293 FAM215AQ9Y5M1 114 aa1.4□□□□□ -2.19
CD44-216ENST00000525293 MINOS1-NBL1R4GNA1 71 aa1.4□□□□□ -2.19
CD44-216ENST00000525293 NCOR1O75376 2440 aa1.4□□□□□ -2.19
CD44-216ENST00000525293 HEATR5AQ86XA9 2040 aa1.4□□□□□ -2.19
CD44-216ENST00000525293 PTPRDP23468 1912 aa1.4□□□□□ -2.19
CD44-216ENST00000525293 TUBGCP6Q96RT7 1819 aa1.4□□□□□ -2.19
CD44-216ENST00000525293 PKD1L3Q7Z443 1732 aa1.4□□□□□ -2.19
CD44-216ENST00000525293 FMN2Q9NZ56 1722 aa1.4□□□□□ -2.19
CD44-216ENST00000525293 DEPDC5O75140 1603 aa1.4□□□□□ -2.19
CD44-216ENST00000525293 LRP6O75581 1613 aa1.4□□□□□ -2.19
CD44-216ENST00000525293 USP32Q8NFA0 1604 aa1.4□□□□□ -2.19
CD44-216ENST00000525293 BPTFQ12830 3046 aa1.4□□□□□ -2.19
CD44-216ENST00000525293 PTPRBP23467 1997 aa1.39□□□□□ -2.19
CD44-216ENST00000525293 PLXNA1Q9UIW2 1896 aa1.39□□□□□ -2.19
CD44-216ENST00000525293 ZNF407Q9C0G0 2248 aa1.39□□□□□ -2.19
CD44-216ENST00000525293 MED12LQ86YW9 2145 aa1.39□□□□□ -2.19
CD44-216ENST00000525293 ATAD5Q96QE3 1844 aa1.39□□□□□ -2.19
CD44-216ENST00000525293 IGLV2-33A0A075B6J2 118 aaPredicted RBP1.39□□□□□ -2.19
CD44-216ENST00000525293 A0A096LNJ9 63 aa1.39□□□□□ -2.19
CD44-216ENST00000525293 TRAV10A0A0B4J240 114 aa1.39□□□□□ -2.19
CD44-216ENST00000525293 IGHV1-3A0A0C4DH29 117 aa1.39□□□□□ -2.19
CD44-216ENST00000525293 TRBV7-4A0A0J9YYF1 115 aa1.39□□□□□ -2.19
CD44-216ENST00000525293 TRBV30A0A0K0K1B3 111 aa1.39□□□□□ -2.19
CD44-216ENST00000525293 LOC101927531A0A1B0GV80 90 aa1.39□□□□□ -2.19
CD44-216ENST00000525293 SMIM27A0A1W2PRY6 76 aa1.39□□□□□ -2.19
CD44-216ENST00000525293 D6R8Y8 96 aa1.39□□□□□ -2.19
CD44-216ENST00000525293 H7C2G1 150 aa1.39□□□□□ -2.19
CD44-216ENST00000525293 ERC2-IT1O76042 136 aa1.39□□□□□ -2.19
CD44-216ENST00000525293 COX6CP09669 75 aa1.39□□□□□ -2.19
CD44-216ENST00000525293 FXYD6P3P58550 94 aa1.39□□□□□ -2.19
CD44-216ENST00000525293 LINC00483Q53H64 154 aa1.39□□□□□ -2.19
CD44-216ENST00000525293 MUSTN1Q8IVN3 82 aa1.39□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms