RNA–Protein interactions for RNA: ENST00000519895.5

MCF2-208, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,346 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-208ENST00000519895 ATP6V0E2Q8NHE4 81 aa1.93□□□□□ -2.1
MCF2-208ENST00000519895 MAP1LC3CQ9BXW4 147 aa1.93□□□□□ -2.1
MCF2-208ENST00000519895 IGKV3-7A0A075B6H7 116 aa1.92□□□□□ -2.1
MCF2-208ENST00000519895 TRGV2A0A075B6R0 118 aa1.92□□□□□ -2.1
MCF2-208ENST00000519895 TRGV1A0A0A0MS02 117 aa1.92□□□□□ -2.1
MCF2-208ENST00000519895 TRAV8-1A0A0A6YYK1 113 aa1.92□□□□□ -2.1
MCF2-208ENST00000519895 PANO1I0J062 215 aa1.92□□□□□ -2.1
MCF2-208ENST00000519895 M0QXV9 152 aa1.92□□□□□ -2.1
MCF2-208ENST00000519895 PMCHP20382 165 aa1.92□□□□□ -2.1
MCF2-208ENST00000519895 POLR2KP53803 58 aaKnown RBP1.92□□□□□ -2.1
MCF2-208ENST00000519895 XGP55808 180 aa1.92□□□□□ -2.1
MCF2-208ENST00000519895 IGFL4Q6B9Z1 124 aa1.92□□□□□ -2.1
MCF2-208ENST00000519895 ALKAL2Q6UX46 152 aa1.92□□□□□ -2.1
MCF2-208ENST00000519895 OR2D3Q8NGH3 330 aa1.92□□□□□ -2.1
MCF2-208ENST00000519895 Q8TAT8 98 aa1.92□□□□□ -2.1
MCF2-208ENST00000519895 RNF185Q96GF1 192 aa1.92□□□□□ -2.1
MCF2-208ENST00000519895 GNB1LQ9BYB4 327 aa1.92□□□□□ -2.1
MCF2-208ENST00000519895 URGCP-MRPS24S4R325 110 aa1.92□□□□□ -2.1
MCF2-208ENST00000519895 TRGV4A0A0C4DH28 118 aa1.92□□□□□ -2.1
MCF2-208ENST00000519895 GNRH2O43555 120 aa1.92□□□□□ -2.1
MCF2-208ENST00000519895 SMIM17P0DL12 118 aa1.92□□□□□ -2.1
MCF2-208ENST00000519895 ESDP10768 282 aa1.92□□□□□ -2.1
MCF2-208ENST00000519895 AKR1D1P51857 326 aa1.92□□□□□ -2.1
MCF2-208ENST00000519895 FAM104BQ5XKR9 115 aa1.92□□□□□ -2.1
MCF2-208ENST00000519895 Q6ZRN7 208 aaPredicted RBP1.92□□□□□ -2.1
MCF2-208ENST00000519895 C6orf223Q8N319 242 aa1.92□□□□□ -2.1
MCF2-208ENST00000519895 DEFB104AQ8WTQ1 72 aa1.92□□□□□ -2.1
MCF2-208ENST00000519895 LINC00588Q9Y4M8 146 aa1.92□□□□□ -2.1
MCF2-208ENST00000519895 TRBV6-8A0A0A6YYG3 113 aa1.92□□□□□ -2.1
MCF2-208ENST00000519895 IGHV1-24A0A0C4DH33 117 aa1.92□□□□□ -2.1
MCF2-208ENST00000519895 A0A1B0GVG6 124 aa1.92□□□□□ -2.1
MCF2-208ENST00000519895 F5H768 121 aa1.92□□□□□ -2.1
MCF2-208ENST00000519895 HLA-DQA1P01909 254 aa1.92□□□□□ -2.1
MCF2-208ENST00000519895 HBBP68871 147 aa1.92□□□□□ -2.1
MCF2-208ENST00000519895 MIAQ16674 131 aa1.92□□□□□ -2.1
MCF2-208ENST00000519895 EIF5A2Q9GZV4 153 aaKnown RBP1.92□□□□□ -2.1
MCF2-208ENST00000519895 PPDPFQ9H3Y8 114 aa1.92□□□□□ -2.1
MCF2-208ENST00000519895 SPANXA1Q9NS26 97 aa1.92□□□□□ -2.1
MCF2-208ENST00000519895 MSRB1Q9NZV6 116 aa1.92□□□□□ -2.1
MCF2-208ENST00000519895 SNAPINO95295 136 aa1.91□□□□□ -2.1
MCF2-208ENST00000519895 EVI2AP22794 236 aa1.91□□□□□ -2.1
MCF2-208ENST00000519895 FXYD7P58549 80 aa1.91□□□□□ -2.1
MCF2-208ENST00000519895 SPANXN1Q5VSR9 72 aa1.91□□□□□ -2.1
MCF2-208ENST00000519895 LYZL1Q6UWQ5 148 aa1.91□□□□□ -2.1
MCF2-208ENST00000519895 NIT1Q86X76 327 aa1.91□□□□□ -2.1
MCF2-208ENST00000519895 SLC25A29Q8N8R3 303 aa1.91□□□□□ -2.1
MCF2-208ENST00000519895 GTSF1Q8WW33 167 aa1.91□□□□□ -2.1
MCF2-208ENST00000519895 NACAE9PAV3 2078 aa1.91□□□□□ -2.1
MCF2-208ENST00000519895 I3L3M4 83 aa1.91□□□□□ -2.1
MCF2-208ENST00000519895 RTL8CO15255 209 aa1.91□□□□□ -2.1
MCF2-208ENST00000519895 SFTA3P0C7M3 94 aa1.91□□□□□ -2.1
MCF2-208ENST00000519895 RAB4AP20338 218 aa1.91□□□□□ -2.1
MCF2-208ENST00000519895 RPL13AP40429 203 aaKnown RBP1.91□□□□□ -2.1
MCF2-208ENST00000519895 ESRGQ1W209 222 aa1.91□□□□□ -2.1
MCF2-208ENST00000519895 C1orf134Q5TEV5 83 aa1.91□□□□□ -2.1
MCF2-208ENST00000519895 SFTA2Q6UW10 78 aa1.91□□□□□ -2.1
MCF2-208ENST00000519895 SVBPQ8N300 66 aa1.91□□□□□ -2.1
MCF2-208ENST00000519895 YPEL4Q96NS1 127 aa1.91□□□□□ -2.1
MCF2-208ENST00000519895 TMEM70Q9BUB7 260 aa1.91□□□□□ -2.1
MCF2-208ENST00000519895 NXT2Q9NPJ8 142 aaKnown RBP1.91□□□□□ -2.1
MCF2-208ENST00000519895 MRPL16Q9NX20 251 aaKnown RBP1.91□□□□□ -2.1
MCF2-208ENST00000519895 TRBV25-1A0A075B6N4 114 aa1.91□□□□□ -2.1
MCF2-208ENST00000519895 H3BVH4 76 aa1.91□□□□□ -2.1
MCF2-208ENST00000519895 ATP5LO75964 103 aa1.91□□□□□ -2.1
MCF2-208ENST00000519895 DEFB1P60022 68 aa1.91□□□□□ -2.1
MCF2-208ENST00000519895 ERVFC1-1P60608 527 aa1.91□□□□□ -2.1
MCF2-208ENST00000519895 NRACQ8N912 160 aa1.91□□□□□ -2.1
MCF2-208ENST00000519895 Q8N976 141 aa1.91□□□□□ -2.1
MCF2-208ENST00000519895 NUP35Q8NFH5 326 aa1.91□□□□□ -2.1
MCF2-208ENST00000519895 BAALCQ8WXS3 180 aa1.91□□□□□ -2.1
MCF2-208ENST00000519895 IGLL5B9A064 214 aa1.9□□□□□ -2.1
MCF2-208ENST00000519895 IGKV3-20P01619 116 aa1.9□□□□□ -2.1
MCF2-208ENST00000519895 S100PP25815 95 aa1.9□□□□□ -2.1
MCF2-208ENST00000519895 RAB5BP61020 215 aa1.9□□□□□ -2.1
MCF2-208ENST00000519895 CNBPP62633 177 aaKnown RBP1.9□□□□□ -2.1
MCF2-208ENST00000519895 SEC11AP67812 179 aa1.9□□□□□ -2.1
MCF2-208ENST00000519895 FOXI1Q12951 378 aa1.9□□□□□ -2.1
MCF2-208ENST00000519895 ORMDL2Q53FV1 153 aa1.9□□□□□ -2.1
MCF2-208ENST00000519895 C5orf47Q569G3 176 aa1.9□□□□□ -2.1
MCF2-208ENST00000519895 SUMO4Q6EEV6 95 aa1.9□□□□□ -2.1
MCF2-208ENST00000519895 OR10AG1Q8NH19 301 aa1.9□□□□□ -2.1
MCF2-208ENST00000519895 ST20Q9HBF5 79 aa1.9□□□□□ -2.1
MCF2-208ENST00000519895 HMCN1Q96RW7 5635 aa1.9□□□□□ -2.11
MCF2-208ENST00000519895 IGLV2-18A0A075B6J9 118 aa1.9□□□□□ -2.11
MCF2-208ENST00000519895 HIGD1CA8MV81 97 aa1.9□□□□□ -2.11
MCF2-208ENST00000519895 NTF3P20783 257 aa1.9□□□□□ -2.11
MCF2-208ENST00000519895 CIRBPQ14011 172 aaKnown RBP1.9□□□□□ -2.11
MCF2-208ENST00000519895 KRTAP26-1Q6PEX3 210 aa1.9□□□□□ -2.11
MCF2-208ENST00000519895 Q8N8P6 123 aa1.9□□□□□ -2.11
MCF2-208ENST00000519895 OR5A1Q8NGJ0 315 aa1.9□□□□□ -2.11
MCF2-208ENST00000519895 TMEM141Q96I45 108 aa1.9□□□□□ -2.11
MCF2-208ENST00000519895 C2orf48Q96LS8 159 aa1.9□□□□□ -2.11
MCF2-208ENST00000519895 TIMM17AQ99595 171 aa1.9□□□□□ -2.11
MCF2-208ENST00000519895 TMEM243Q9BU79 118 aa1.9□□□□□ -2.11
MCF2-208ENST00000519895 DERL1Q9BUN8 251 aa1.9□□□□□ -2.11
MCF2-208ENST00000519895 LRP2P98164 4655 aa1.89□□□□□ -2.11
MCF2-208ENST00000519895 LOC100131303A0A0U1RQF7 123 aa1.89□□□□□ -2.11
MCF2-208ENST00000519895 C9JQL5 133 aa1.89□□□□□ -2.11
MCF2-208ENST00000519895 DEFB130BP0DP73 79 aa1.89□□□□□ -2.11
MCF2-208ENST00000519895 DEFB130AP0DP74 79 aa1.89□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms