RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 MEIG1Q5JSS6 88 aa5.98□□□□□ -1.45
USP54-215ENST00000497106 LEPROTO15243 131 aa5.98□□□□□ -1.45
USP54-215ENST00000497106 NHLRC4P0CG21 123 aaPredicted RBP5.98□□□□□ -1.45
USP54-215ENST00000497106 SPATA3Q8NHX4 192 aa5.98□□□□□ -1.45
USP54-215ENST00000497106 KLK5Q9Y337 293 aaPredicted RBP5.98□□□□□ -1.45
USP54-215ENST00000497106 C2CD3Q4AC94 2353 aa5.97□□□□□ -1.45
USP54-215ENST00000497106 TINCRA0A1B0GVN0 87 aa5.97□□□□□ -1.45
USP54-215ENST00000497106 GAS8-AS1O95177 125 aa5.97□□□□□ -1.45
USP54-215ENST00000497106 CCL18P55774 89 aa5.97□□□□□ -1.45
USP54-215ENST00000497106 FN1P02751 2386 aaKnown RBP5.97□□□□□ -1.45
USP54-215ENST00000497106 ADGRG4Q8IZF6 3080 aa5.97□□□□□ -1.45
USP54-215ENST00000497106 C9orf118A6NHY6 69 aa5.97□□□□□ -1.45
USP54-215ENST00000497106 PRM2P04554 102 aa5.97□□□□□ -1.45
USP54-215ENST00000497106 TAL2Q16559 108 aa5.97□□□□□ -1.45
USP54-215ENST00000497106 CHCHD7Q9BUK0 85 aa5.97□□□□□ -1.45
USP54-215ENST00000497106 CSDC2Q9Y534 153 aaKnown RBP5.97□□□□□ -1.45
USP54-215ENST00000497106 BSNQ9UPA5 3926 aa5.97□□□□□ -1.45
USP54-215ENST00000497106 IGLV4-3A0A075B6K6 122 aa5.97□□□□□ -1.45
USP54-215ENST00000497106 DEFB131BA0A096LNP1 70 aa5.97□□□□□ -1.45
USP54-215ENST00000497106 H3BNG1 76 aa5.97□□□□□ -1.45
USP54-215ENST00000497106 GIG44P09565 113 aaPredicted RBP5.97□□□□□ -1.45
USP54-215ENST00000497106 Q8N976 141 aa5.97□□□□□ -1.45
USP54-215ENST00000497106 DEFB104AQ8WTQ1 72 aa5.97□□□□□ -1.45
USP54-215ENST00000497106 ZFHX4Q86UP3 3567 aa5.97□□□□□ -1.45
USP54-215ENST00000497106 LELP1Q5T871 98 aa5.96□□□□□ -1.45
USP54-215ENST00000497106 LINC00612Q8N6U2 182 aa5.96□□□□□ -1.45
USP54-215ENST00000497106 E9PLD3 99 aa5.96□□□□□ -1.46
USP54-215ENST00000497106 TCTAP57738 103 aa5.96□□□□□ -1.46
USP54-215ENST00000497106 VSIG2Q96IQ7 327 aa5.96□□□□□ -1.46
USP54-215ENST00000497106 TIRAPP58753 221 aa5.96□□□□□ -1.46
USP54-215ENST00000497106 UBE2D4Q9Y2X8 147 aa5.96□□□□□ -1.46
USP54-215ENST00000497106 IGIPA6NJ69 53 aa5.95□□□□□ -1.46
USP54-215ENST00000497106 B5MCH6 92 aa5.95□□□□□ -1.46
USP54-215ENST00000497106 ANGP03950 147 aaKnown RBP5.95□□□□□ -1.46
USP54-215ENST00000497106 Q8NAQ8 132 aa5.95□□□□□ -1.46
USP54-215ENST00000497106 FABP2P12104 132 aa5.95□□□□□ -1.46
USP54-215ENST00000497106 SPCS1Q9Y6A9 102 aa5.95□□□□□ -1.46
USP54-215ENST00000497106 SORL1Q92673 2214 aa5.95□□□□□ -1.46
USP54-215ENST00000497106 J3QQQ9 107 aa5.95□□□□□ -1.46
USP54-215ENST00000497106 M0QXV9 152 aa5.95□□□□□ -1.46
USP54-215ENST00000497106 Q6ZUT4 128 aa5.95□□□□□ -1.46
USP54-215ENST00000497106 NFE4Q86UQ8 179 aa5.95□□□□□ -1.46
USP54-215ENST00000497106 ZZEF1O43149 2961 aa5.95□□□□□ -1.46
USP54-215ENST00000497106 SNCGO76070 127 aa5.94□□□□□ -1.46
USP54-215ENST00000497106 A0A096LNJ9 63 aa5.94□□□□□ -1.46
USP54-215ENST00000497106 A0A096LPF7 62 aa5.94□□□□□ -1.46
USP54-215ENST00000497106 A0A0J9YWU9 116 aa5.94□□□□□ -1.46
USP54-215ENST00000497106 RAB37Q96AX2 223 aa5.94□□□□□ -1.46
USP54-215ENST00000497106 HIGD1BQ9P298 99 aa5.94□□□□□ -1.46
USP54-215ENST00000497106 SPINK8P0C7L1 97 aa5.94□□□□□ -1.46
USP54-215ENST00000497106 TOMM7Q9P0U1 55 aa5.94□□□□□ -1.46
USP54-215ENST00000497106 A0A0J9YXV3 536 aa5.94□□□□□ -1.46
USP54-215ENST00000497106 SMIM13P0DJ93 91 aa5.94□□□□□ -1.46
USP54-215ENST00000497106 KRTAP10-11P60412 298 aa5.94□□□□□ -1.46
USP54-215ENST00000497106 TRAV16A0A0A6YYK6 109 aaPredicted RBP5.93□□□□□ -1.46
USP54-215ENST00000497106 Q1RN00 199 aa5.93□□□□□ -1.46
USP54-215ENST00000497106 ZNF575Q86XF7 245 aa5.93□□□□□ -1.46
USP54-215ENST00000497106 C10orf126Q8N4M7 172 aa5.93□□□□□ -1.46
USP54-215ENST00000497106 Q6ZSN1 163 aa5.93□□□□□ -1.46
USP54-215ENST00000497106 APCP25054 2843 aa5.93□□□□□ -1.46
USP54-215ENST00000497106 H3BUT2 72 aa5.93□□□□□ -1.46
USP54-215ENST00000497106 CXCL5P42830 114 aa5.93□□□□□ -1.46
USP54-215ENST00000497106 KPRPQ5T749 579 aaPredicted RBP5.93□□□□□ -1.46
USP54-215ENST00000497106 C6orf226Q5I0X4 101 aa5.93□□□□□ -1.46
USP54-215ENST00000497106 PLAC8L1A1L4L8 177 aa5.92□□□□□ -1.46
USP54-215ENST00000497106 NDUFA12Q9UI09 145 aa5.92□□□□□ -1.46
USP54-215ENST00000497106 JMJD1CQ15652 2540 aa5.92□□□□□ -1.46
USP54-215ENST00000497106 IGHV1-58A0A0C4DH39 117 aa5.92□□□□□ -1.46
USP54-215ENST00000497106 CFAP47Q6ZTR5 3102 aa5.92□□□□□ -1.46
USP54-215ENST00000497106 AMELXQ99217 191 aa5.92□□□□□ -1.46
USP54-215ENST00000497106 RETNQ9HD89 108 aa5.92□□□□□ -1.46
USP54-215ENST00000497106 CENPEQ02224 2701 aa5.91□□□□□ -1.46
USP54-215ENST00000497106 FLNBO75369 2602 aaKnown RBP5.91□□□□□ -1.46
USP54-215ENST00000497106 LOC100131303A0A0U1RQF7 123 aa5.91□□□□□ -1.46
USP54-215ENST00000497106 A0A1B0GUV1 79 aa5.91□□□□□ -1.46
USP54-215ENST00000497106 COL12A1Q99715 3063 aa5.91□□□□□ -1.46
USP54-215ENST00000497106 IGHV3-64A0A075B6Q5 118 aa5.91□□□□□ -1.46
USP54-215ENST00000497106 F8W1H4 67 aa5.91□□□□□ -1.46
USP54-215ENST00000497106 COX7A2LO14548 114 aa5.91□□□□□ -1.46
USP54-215ENST00000497106 RNASE13Q5GAN3 156 aaKnown RBP5.91□□□□□ -1.46
USP54-215ENST00000497106 ZFAND6Q6FIF0 208 aa5.91□□□□□ -1.46
USP54-215ENST00000497106 PKIGQ9Y2B9 76 aa5.91□□□□□ -1.46
USP54-215ENST00000497106 TRAV8-4A0A0B4J246 113 aa5.91□□□□□ -1.46
USP54-215ENST00000497106 A0A1W2PPM0 123 aa5.91□□□□□ -1.46
USP54-215ENST00000497106 CDC42SE2Q9NRR3 84 aa5.91□□□□□ -1.46
USP54-215ENST00000497106 TMEM223A0PJW6 202 aa5.9□□□□□ -1.46
USP54-215ENST00000497106 COX6CP09669 75 aa5.9□□□□□ -1.46
USP54-215ENST00000497106 C1orf43Q9BWL3 253 aa5.9□□□□□ -1.46
USP54-215ENST00000497106 TMEM126AQ9H061 195 aa5.9□□□□□ -1.46
USP54-215ENST00000497106 UTP20O75691 2785 aaKnown RBP5.9□□□□□ -1.46
USP54-215ENST00000497106 ZNF22P17026 224 aaPredicted RBP5.9□□□□□ -1.46
USP54-215ENST00000497106 UBE2D1P51668 147 aa5.9□□□□□ -1.46
USP54-215ENST00000497106 C12orf74Q32Q52 190 aa5.9□□□□□ -1.46
USP54-215ENST00000497106 NUPR2A6NF83 97 aa5.9□□□□□ -1.47
USP54-215ENST00000497106 B9D2Q9BPU9 175 aa5.9□□□□□ -1.47
USP54-215ENST00000497106 OPRPNQ99935 248 aaPredicted RBP5.9□□□□□ -1.47
USP54-215ENST00000497106 TM2D2Q9BX73 214 aa5.9□□□□□ -1.47
USP54-215ENST00000497106 IFITM1P13164 125 aa5.89□□□□□ -1.47
USP54-215ENST00000497106 NANOS2P60321 138 aaKnown RBP5.89□□□□□ -1.47
USP54-215ENST00000497106 LINC01561Q8N1V8 128 aa5.89□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms