RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 NCOA6Q14686 2063 aaPredicted RBP9.79□□□□□ -0.84
PTPRF-215ENST00000496447 TRBV30A0A0K0K1B3 111 aa9.79□□□□□ -0.84
PTPRF-215ENST00000496447 A0A0U1RQV1 116 aa9.79□□□□□ -0.84
PTPRF-215ENST00000496447 CRIP3Q6Q6R5 217 aa9.79□□□□□ -0.84
PTPRF-215ENST00000496447 MLST8Q9BVC4 326 aa9.79□□□□□ -0.84
PTPRF-215ENST00000496447 TMEM256-PLSCR3K7ERE1 68 aa9.78□□□□□ -0.84
PTPRF-215ENST00000496447 FAM19A1Q7Z5A9 133 aa9.78□□□□□ -0.84
PTPRF-215ENST00000496447 LINC00694P0DN24 101 aa9.78□□□□□ -0.84
PTPRF-215ENST00000496447 NAV2Q8IVL1 2488 aa9.78□□□□□ -0.84
PTPRF-215ENST00000496447 IGKV2D-26A0A0A0MRZ7 120 aa9.78□□□□□ -0.84
PTPRF-215ENST00000496447 TRBV6-4A0A1B0GX49 114 aa9.78□□□□□ -0.84
PTPRF-215ENST00000496447 C1orf195Q5TG92 126 aa9.77□□□□□ -0.84
PTPRF-215ENST00000496447 IGLV2-18A0A075B6J9 118 aa9.77□□□□□ -0.85
PTPRF-215ENST00000496447 TRAV23DV6A0A075B6W5 121 aa9.77□□□□□ -0.85
PTPRF-215ENST00000496447 TRBV6-8A0A0A6YYG3 113 aa9.77□□□□□ -0.85
PTPRF-215ENST00000496447 C18orf65Q6ZTR6 163 aa9.77□□□□□ -0.85
PTPRF-215ENST00000496447 PDE6GP18545 87 aa9.77□□□□□ -0.85
PTPRF-215ENST00000496447 SDIM1Q6ZPB5 146 aa9.77□□□□□ -0.85
PTPRF-215ENST00000496447 UPK3BQ9BT76 320 aa9.77□□□□□ -0.85
PTPRF-215ENST00000496447 MED12LQ86YW9 2145 aa9.77□□□□□ -0.85
PTPRF-215ENST00000496447 MRPS12O15235 138 aaKnown RBP9.77□□□□□ -0.85
PTPRF-215ENST00000496447 BBC3Q96PG8 261 aaPredicted RBP9.77□□□□□ -0.85
PTPRF-215ENST00000496447 KIR2DL5BQ8NHK3 375 aa9.77□□□□□ -0.85
PTPRF-215ENST00000496447 ALPK3Q96L96 1907 aa9.77□□□□□ -0.85
PTPRF-215ENST00000496447 CDSNQ15517 529 aa9.76□□□□□ -0.85
PTPRF-215ENST00000496447 PIEZO1Q92508 2521 aa9.76□□□□□ -0.85
PTPRF-215ENST00000496447 C14orf132Q9NPU4 83 aa9.76□□□□□ -0.85
PTPRF-215ENST00000496447 U3KQK5 164 aa9.76□□□□□ -0.85
PTPRF-215ENST00000496447 NCOR2Q9Y618 2525 aa9.76□□□□□ -0.85
PTPRF-215ENST00000496447 Q8N6K4 173 aa9.76□□□□□ -0.85
PTPRF-215ENST00000496447 MAPKAPK5-AS1Q8N8E1 139 aa9.76□□□□□ -0.85
PTPRF-215ENST00000496447 WFDC10AQ9H1F0 79 aa9.76□□□□□ -0.85
PTPRF-215ENST00000496447 PRR14LQ5THK1 2151 aa9.75□□□□□ -0.85
PTPRF-215ENST00000496447 A0A096LNI7 61 aa9.75□□□□□ -0.85
PTPRF-215ENST00000496447 A0A0J9YXY3 114 aa9.75□□□□□ -0.85
PTPRF-215ENST00000496447 M0R2N4 97 aa9.75□□□□□ -0.85
PTPRF-215ENST00000496447 LINC00310P59036 64 aa9.75□□□□□ -0.85
PTPRF-215ENST00000496447 FAM19A5Q7Z5A7 132 aaPredicted RBP9.75□□□□□ -0.85
PTPRF-215ENST00000496447 TNRC6BQ9UPQ9 1833 aaKnown RBP9.75□□□□□ -0.85
PTPRF-215ENST00000496447 SORL1Q92673 2214 aa9.75□□□□□ -0.85
PTPRF-215ENST00000496447 NDUFC1O43677 76 aa9.75□□□□□ -0.85
PTPRF-215ENST00000496447 C7orf33Q8WU49 177 aa9.75□□□□□ -0.85
PTPRF-215ENST00000496447 SMR3AQ99954 134 aa9.74□□□□□ -0.85
PTPRF-215ENST00000496447 CDKN2A-AS1Q9UH64 79 aa9.74□□□□□ -0.85
PTPRF-215ENST00000496447 CCDC168Q8NDH2 2452 aa9.74□□□□□ -0.85
PTPRF-215ENST00000496447 PRB2P02812 416 aaPredicted RBP9.74□□□□□ -0.85
PTPRF-215ENST00000496447 MPLKIPQ8TAP9 179 aa9.74□□□□□ -0.85
PTPRF-215ENST00000496447 LY6G6CO95867 125 aa9.74□□□□□ -0.85
PTPRF-215ENST00000496447 Q6ZS46 218 aa9.74□□□□□ -0.85
PTPRF-215ENST00000496447 KPRPQ5T749 579 aaPredicted RBP9.73□□□□□ -0.85
PTPRF-215ENST00000496447 TRIAP1O43715 76 aa9.73□□□□□ -0.85
PTPRF-215ENST00000496447 SYCNQ0VAF6 134 aa9.73□□□□□ -0.85
PTPRF-215ENST00000496447 M0QY20 66 aa9.73□□□□□ -0.85
PTPRF-215ENST00000496447 PROK1P58294 105 aa9.73□□□□□ -0.85
PTPRF-215ENST00000496447 MYO18BQ8IUG5 2567 aa9.72□□□□□ -0.85
PTPRF-215ENST00000496447 IGLV4-3A0A075B6K6 122 aa9.72□□□□□ -0.85
PTPRF-215ENST00000496447 IGLV1-40P01703 118 aa9.72□□□□□ -0.85
PTPRF-215ENST00000496447 KRTAP10-9P60411 292 aa9.72□□□□□ -0.85
PTPRF-215ENST00000496447 OXLD1Q5BKU9 147 aa9.72□□□□□ -0.85
PTPRF-215ENST00000496447 NAV3Q8IVL0 2385 aa9.72□□□□□ -0.85
PTPRF-215ENST00000496447 SEC61GP60059 68 aa9.71□□□□□ -0.85
PTPRF-215ENST00000496447 XAGE1AQ9HD64 81 aa9.71□□□□□ -0.85
PTPRF-215ENST00000496447 CEP192Q8TEP8 1941 aa9.71□□□□□ -0.86
PTPRF-215ENST00000496447 USP17L23D6RBM5 183 aa9.7□□□□□ -0.86
PTPRF-215ENST00000496447 AVPP01185 164 aa9.7□□□□□ -0.86
PTPRF-215ENST00000496447 LINC00526Q96FQ7 95 aa9.7□□□□□ -0.86
PTPRF-215ENST00000496447 IBA57-AS1B1ANH7 110 aa9.69□□□□□ -0.86
PTPRF-215ENST00000496447 HRCT1Q6UXD1 115 aa9.69□□□□□ -0.86
PTPRF-215ENST00000496447 ZNF22P17026 224 aaPredicted RBP9.69□□□□□ -0.86
PTPRF-215ENST00000496447 CRIP1P50238 77 aa9.69□□□□□ -0.86
PTPRF-215ENST00000496447 MRPS36P82909 103 aaKnown RBP9.69□□□□□ -0.86
PTPRF-215ENST00000496447 SMIM26A0A096LP01 95 aa9.69□□□□□ -0.86
PTPRF-215ENST00000496447 IGF2RP11717 2491 aa9.69□□□□□ -0.86
PTPRF-215ENST00000496447 NUP210LQ5VU65 1888 aa9.68□□□□□ -0.86
PTPRF-215ENST00000496447 CSDC2Q9Y534 153 aaKnown RBP9.68□□□□□ -0.86
PTPRF-215ENST00000496447 A0A0J9YWU9 116 aa9.68□□□□□ -0.86
PTPRF-215ENST00000496447 TMEM223A0PJW6 202 aa9.68□□□□□ -0.86
PTPRF-215ENST00000496447 SPTSSBQ8NFR3 76 aa9.68□□□□□ -0.86
PTPRF-215ENST00000496447 LELP1Q5T871 98 aa9.68□□□□□ -0.86
PTPRF-215ENST00000496447 IGKV4-1P06312 121 aa9.67□□□□□ -0.86
PTPRF-215ENST00000496447 IGHV4-30-4P0DP06 118 aa9.67□□□□□ -0.86
PTPRF-215ENST00000496447 NANOS2P60321 138 aaKnown RBP9.67□□□□□ -0.86
PTPRF-215ENST00000496447 ARHGAP21Q5T5U3 1957 aa9.67□□□□□ -0.86
PTPRF-215ENST00000496447 BPY2O14599 106 aa9.67□□□□□ -0.86
PTPRF-215ENST00000496447 LOC100131303A0A0U1RQF7 123 aa9.66□□□□□ -0.86
PTPRF-215ENST00000496447 LST1O00453 97 aa9.66□□□□□ -0.86
PTPRF-215ENST00000496447 ABCA2Q9BZC7 2435 aa9.66□□□□□ -0.86
PTPRF-215ENST00000496447 UBE2D1P51668 147 aa9.66□□□□□ -0.86
PTPRF-215ENST00000496447 PRRC2AP48634 2157 aaKnown RBP9.66□□□□□ -0.86
PTPRF-215ENST00000496447 ENHOQ6UWT2 76 aa9.66□□□□□ -0.86
PTPRF-215ENST00000496447 CD164L2Q6UWJ8 174 aa9.65□□□□□ -0.86
PTPRF-215ENST00000496447 SERP1Q9Y6X1 66 aa9.65□□□□□ -0.86
PTPRF-215ENST00000496447 PCNX3Q9H6A9 2034 aa9.65□□□□□ -0.86
PTPRF-215ENST00000496447 TIMM17BO60830 172 aa9.65□□□□□ -0.86
PTPRF-215ENST00000496447 MUC22E2RYF6 1773 aaPredicted RBP9.64□□□□□ -0.87
PTPRF-215ENST00000496447 RNASE3P12724 160 aaKnown RBP9.64□□□□□ -0.87
PTPRF-215ENST00000496447 PIK3CD-AS1Q5SR53 167 aa9.64□□□□□ -0.87
PTPRF-215ENST00000496447 RNF185Q96GF1 192 aa9.64□□□□□ -0.87
PTPRF-215ENST00000496447 KLLNB2CW77 178 aa9.64□□□□□ -0.87
PTPRF-215ENST00000496447 PRR9Q5T870 116 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms